MGE detailed information
MGE type: Genomic_island MGE length: 20932 bp
Accession: NZ_CP087136 Location: 3260383..3281314 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Accession: NZ_CP087136 Location: 3260383..3281314 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOX89_RS15915 (3256215) | 3256215..3257546 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| LOX89_RS15920 (3257568) | 3257568..3258557 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| LOX89_RS15925 (3258656) | 3258656..3259594 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| LOX89_RS15930 (3259909) | 3259909..3260127 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| LOX89_RS15935 (3260383) | 3260383..3260922 | + | 540 | WP_000675733.1 | protein YhaB | - |
| LOX89_RS15940 (3260944) | 3260944..3262131 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| LOX89_RS15950 (3263154) | 3263154..3264299 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| LOX89_RS15955 (3264396) | 3264396..3265286 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| LOX89_RS15960 (3265316) | 3265316..3266086 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| LOX89_RS15965 (3266102) | 3266102..3267436 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| LOX89_RS15970 (3267811) | 3267811..3269382 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| LOX89_RS15975 (3269531) | 3269531..3269866 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| LOX89_RS15980 (3269866) | 3269866..3270330 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| LOX89_RS15985 (3270385) | 3270385..3271194 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| LOX89_RS15990 (3271443) | 3271443..3272723 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| LOX89_RS15995 (3272746) | 3272746..3273219 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| LOX89_RS16000 (3273230) | 3273230..3273601 | + | 372 | Protein_3141 | PTS sugar transporter subunit IIC | - |
| LOX89_RS16005 (3273597) | 3273597..3274154 | + | 558 | Protein_3142 | amidohydrolase family protein | - |
| LOX89_RS16010 (3274505) | 3274505..3275659 | + | 1155 | WP_001114869.1 | AgaS family sugar isomerase | - |
| LOX89_RS16015 (3275672) | 3275672..3276532 | + | 861 | WP_000022766.1 | tagatose-bisphosphate aldolase subunit KbaY | - |
| LOX89_RS16020 (3276699) | 3276699..3277175 | + | 477 | WP_000203711.1 | PTS galactosamine transporter subunit IIB | - |
| LOX89_RS16025 (3277214) | 3277214..3278017 | + | 804 | WP_000544489.1 | PTS galactosamine transporter subunit IIC | - |
| LOX89_RS16030 (3278007) | 3278007..3278798 | + | 792 | WP_000534347.1 | PTS galactosamine transporter subunit IID | - |
| LOX89_RS16035 (3278799) | 3278799..3279554 | + | 756 | WP_001311150.1 | galactosamine-6-phosphate isomerase | - |
| LOX89_RS16040 (3279955) | 3279955..3280539 | + | 585 | WP_001045432.1 | fimbrial protein | - |
| LOX89_RS16045 (3280619) | 3280619..3281314 | + | 696 | WP_000044775.1 | hypothetical protein | VF |
| LOX89_RS16050 (3281343) | 3281343..3283859 | + | 2517 | WP_001355538.1 | fimbria/pilus outer membrane usher protein | - |
| LOX89_RS16055 (3283870) | 3283870..3284961 | + | 1092 | WP_000816992.1 | fimbrial protein | - |
| LOX89_RS16060 (3285004) | 3285004..3285864 | - | 861 | WP_000809262.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|