MGE detailed information
MGE type: Genomic_island MGE length: 22659 bp
Accession: NZ_CP087110 Location: 451954..474612 Organism: Escherichia coli strain PJ-T13 Replicon: chromosome
Accession: NZ_CP087110 Location: 451954..474612 Organism: Escherichia coli strain PJ-T13 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LM520_RS02250 (447404) | 447404..448264 | + | 861 | WP_000809262.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| LM520_RS02255 (448307) | 448307..449398 | - | 1092 | WP_000816992.1 | fimbrial protein | - |
| LM520_RS02260 (449409) | 449409..451925 | - | 2517 | WP_001355538.1 | fimbria/pilus outer membrane usher protein | - |
| LM520_RS02265 (451954) | 451954..452649 | - | 696 | WP_000044775.1 | hypothetical protein | VF |
| LM520_RS02270 (452729) | 452729..453313 | - | 585 | WP_001045432.1 | fimbrial protein | - |
| LM520_RS02275 (453714) | 453714..454469 | - | 756 | WP_001311150.1 | galactosamine-6-phosphate isomerase | - |
| LM520_RS02280 (454470) | 454470..455261 | - | 792 | WP_000534347.1 | PTS galactosamine transporter subunit IID | - |
| LM520_RS02285 (455251) | 455251..456054 | - | 804 | WP_000544489.1 | PTS galactosamine transporter subunit IIC | - |
| LM520_RS02290 (456093) | 456093..456569 | - | 477 | WP_000203711.1 | PTS galactosamine transporter subunit IIB | - |
| LM520_RS02295 (456736) | 456736..457596 | - | 861 | WP_000022766.1 | tagatose-bisphosphate aldolase subunit KbaY | - |
| LM520_RS02300 (457609) | 457609..458763 | - | 1155 | WP_001114869.1 | AgaS family sugar isomerase | - |
| LM520_RS02305 (459114) | 459114..459671 | - | 558 | Protein_450 | amidohydrolase family protein | - |
| LM520_RS02310 (459667) | 459667..460038 | - | 372 | Protein_451 | PTS sugar transporter subunit IIC | - |
| LM520_RS02315 (460049) | 460049..460522 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| LM520_RS02320 (460545) | 460545..461825 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| LM520_RS02325 (462074) | 462074..462883 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| LM520_RS02330 (462938) | 462938..463402 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| LM520_RS02335 (463402) | 463402..463737 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| LM520_RS02340 (463886) | 463886..465457 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| LM520_RS02345 (465832) | 465832..467166 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| LM520_RS02350 (467182) | 467182..467952 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| LM520_RS02355 (467982) | 467982..468872 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| LM520_RS02360 (468969) | 468969..470114 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| LM520_RS02370 (471137) | 471137..472324 | - | 1188 | WP_000484600.1 | YhaC family protein | - |
| LM520_RS02375 (472346) | 472346..472885 | - | 540 | WP_000675733.1 | protein YhaB | - |
| LM520_RS02380 (473141) | 473141..473359 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| LM520_RS02385 (473674) | 473674..474612 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| LM520_RS02390 (474711) | 474711..475700 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| LM520_RS02395 (475722) | 475722..477053 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| LM520_RS02400 (477079) | 477079..478287 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|