MGE detailed information
MGE type: Prophage MGE length: 77337 bp
Accession: NZ_CP087110 Location: 3501000..3578336 Organism: Escherichia coli strain PJ-T13 Replicon: chromosome
Accession: NZ_CP087110 Location: 3501000..3578336 Organism: Escherichia coli strain PJ-T13 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LM520_RS17200 (3496134) | 3496134..3497090 | + | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| LM520_RS17205 (3497087) | 3497087..3499285 | + | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| LM520_RS17210 (3499295) | 3499295..3500251 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| LM520_RS17215 (3500302) | 3500302..3500640 | + | 339 | Protein_3372 | LysR substrate-binding domain-containing protein | - |
| LM520_RS17220 (3500925) | 3500925..3502325 | + | 1401 | WP_001407714.1 | hypothetical protein ; Integrase | Integrase |
| LM520_RS17225 (3502442) | 3502442..3502882 | + | 441 | WP_000224818.1 | protein YagN | - |
| LM520_RS17230 (3502879) | 3502879..3503103 | + | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| LM520_RS17235 (3503222) | 3503222..3504076 | + | 855 | WP_000072039.1 | protein YagM | - |
| LM520_RS17240 (3504103) | 3504103..3504801 | + | 699 | WP_001214248.1 | recombinase family protein | - |
| LM520_RS17245 (3505073) | 3505073..3505699 | + | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| LM520_RS17250 (3505790) | 3505790..3506521 | - | 732 | WP_000388269.1 | protein YagJ | - |
| LM520_RS17255 (3506675) | 3506675..3507372 | + | 698 | WP_223293341.1 | IS1 family transposase IS1R | Transposase |
| LM520_RS17260 (3507389) | 3507389..3507592 | - | 204 | Protein_3381 | DUF3987 domain-containing protein | - |
| LM520_RS17265 (3507651) | 3507651..3507746 | + | 96 | WP_211180486.1 | putative translational regulatory protein ArgL | - |
| LM520_RS17270 (3507716) | 3507716..3508720 | + | 1005 | WP_001281825.1 | hypothetical protein | VF |
| LM520_RS17275 (3508859) | 3508859..3509617 | + | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| LM520_RS17280 (3509622) | 3509622..3511232 | - | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| LM520_RS17285 (3511244) | 3511244..3512626 | - | 1383 | WP_000192863.1 | MFS transporter | - |
| LM520_RS17290 (3512853) | 3512853..3514820 | - | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| LM520_RS17295 (3514835) | 3514835..3515743 | - | 909 | WP_001136613.1 | 2-keto-3-deoxygluconate aldolase | - |
| LM520_RS17300 (3516038) | 3516038..3517192 | + | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| LM520_RS17305 (3517207) | 3517207..3517272 | + | 66 | Protein_3390 | hypothetical protein | - |
| LM520_RS17310 (3517286) | 3517286..3517636 | + | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| LM520_RS17315 (3517659) | 3517659..3517907 | + | 249 | Protein_3392 | IS3 family transposase ISEhe3 | Transposase |
| LM520_RS17320 (3517917) | 3517917..3518090 | - | 174 | Protein_3393 | IS30 family transposase | - |
| LM520_RS17325 (3518146) | 3518146..3518843 | + | 698 | WP_223293341.1 | IS1 family transposase IS1R | Transposase |
| LM520_RS17330 (3518860) | 3518860..3519207 | + | 348 | Protein_3395 | ABC transporter permease subunit | - |
| LM520_RS17335 (3519219) | 3519219..3520265 | + | 1047 | WP_000192349.1 | hypothetical protein | VF |
| LM520_RS17340 (3520374) | 3520374..3521306 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| LM520_RS17345 (3521293) | 3521293..3522696 | - | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| LM520_RS17350 (3522940) | 3522940..3523920 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| LM520_RS17355 (3524139) | 3524139..3525194 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| LM520_RS17360 (3525233) | 3525233..3525634 | - | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
| - (3526352) | 3526352..3526432 | - | 81 | NuclAT_12 | - | - |
| - (3526352) | 3526352..3526432 | - | 81 | NuclAT_12 | - | - |
| - (3526352) | 3526352..3526432 | - | 81 | NuclAT_12 | - | - |
| - (3526352) | 3526352..3526432 | - | 81 | NuclAT_12 | - | - |
| LM520_RS17365 (3525692) | 3525692..3526936 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| LM520_RS17370 (3527028) | 3527028..3527486 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| LM520_RS17375 (3527747) | 3527747..3529204 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| LM520_RS17380 (3529261) | 3529261..3529782 | - | 522 | Protein_3405 | peptide chain release factor H | - |
| LM520_RS17385 (3529778) | 3529778..3529984 | - | 207 | Protein_3406 | RtcB family protein | - |
| LM520_RS17390 (3530302) | 3530302..3530754 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| LM520_RS17395 (3530764) | 3530764..3531162 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| LM520_RS17400 (3531165) | 3531165..3531458 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| LM520_RS17405 (3531510) | 3531510..3532565 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| LM520_RS17410 (3532636) | 3532636..3533421 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| LM520_RS17415 (3533393) | 3533393..3535105 | + | 1713 | Protein_3412 | hypothetical protein | VF |
| LM520_RS17420 (3535329) | 3535329..3535826 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| LM520_RS17425 (3536002) | 3536002..3536751 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| LM520_RS17430 (3536961) | 3536961..3537221 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| LM520_RS17435 (3537224) | 3537224..3537502 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| LM520_RS17440 (3537658) | 3537658..3538398 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| LM520_RS17445 (3538369) | 3538369..3539136 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| LM520_RS17450 (3539342) | 3539342..3539920 | - | 579 | WP_000284050.1 | hypothetical protein | VF |
| LM520_RS17455 (3540160) | 3540160..3542604 | + | 2445 | WP_000973083.1 | hypothetical protein | VF |
| LM520_RS17460 (3542647) | 3542647..3543093 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| LM520_RS17465 (3543274) | 3543274..3544044 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| LM520_RS17470 (3544085) | 3544085..3544363 | - | 279 | Protein_3423 | ISAs1 family transposase | - |
| LM520_RS17475 (3544361) | 3544361..3544717 | + | 357 | Protein_3424 | hypothetical protein | - |
| LM520_RS17480 (3544727) | 3544727..3545206 | + | 480 | WP_001236645.1 | protein YkfM | - |
| LM520_RS17485 (3545343) | 3545343..3546128 | - | 786 | WP_001086141.1 | lipoprotein | - |
| LM520_RS17495 (3546665) | 3546665..3547396 | - | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| LM520_RS17500 (3547461) | 3547461..3547928 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| LM520_RS17505 (3547925) | 3547925..3548647 | - | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| LM520_RS17510 (3548681) | 3548681..3549436 | + | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| LM520_RS17515 (3549508) | 3549508..3550866 | + | 1359 | WP_000644685.1 | hypothetical protein | VF |
| LM520_RS17520 (3550914) | 3550914..3551510 | - | 597 | Protein_3432 | methyltransferase domain-containing protein | - |
| LM520_RS17525 (3551541) | 3551541..3552341 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| LM520_RS17530 (3552582) | 3552582..3553496 | + | 915 | WP_000648572.1 | hypothetical protein | VF |
| LM520_RS17535 (3553493) | 3553493..3554296 | - | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| LM520_RS17570 (3560054) | 3560054..3560629 | - | 576 | WP_001140187.1 | hypothetical protein | VF |
| LM520_RS17575 (3560817) | 3560817..3561848 | + | 1032 | WP_000594006.1 | hypothetical protein | VF |
| LM520_RS17580 (3561841) | 3561841..3562494 | + | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| LM520_RS17585 (3562534) | 3562534..3563349 | + | 816 | WP_000874226.1 | hypothetical protein | VF |
| LM520_RS17590 (3563467) | 3563467..3563871 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| LM520_RS17595 (3563868) | 3563868..3564575 | + | 708 | WP_000094011.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| LM520_RS17600 (3564687) | 3564687..3566405 | + | 1719 | WP_001260717.1 | proline--tRNA ligase | - |
| LM520_RS17605 (3566459) | 3566459..3567283 | + | 825 | WP_001336393.1 | YaeF family permuted papain-like enzyme | - |
| LM520_RS17610 (3567483) | 3567483..3568193 | - | 711 | WP_000239163.1 | envelope stress response activation lipoprotein NlpE | - |
| LM520_RS17615 (3568207) | 3568207..3568629 | - | 423 | WP_000635537.1 | alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB | - |
| LM520_RS17620 (3568626) | 3568626..3569171 | - | 546 | WP_001185290.1 | YaeQ family protein | - |
| LM520_RS17625 (3569337) | 3569337..3569537 | + | 201 | WP_000417058.1 | YaeP family protein | - |
| LM520_RS17630 (3569524) | 3569524..3569784 | + | 261 | WP_000062312.1 | Rho-binding antiterminator | - |
| LM520_RS17635 (3569833) | 3569833..3571131 | - | 1299 | WP_000176549.1 | tRNA lysidine(34) synthetase TilS | - |
| LM520_RS17640 (3571196) | 3571196..3571585 | - | 390 | WP_000901099.1 | VOC family protein | - |
| LM520_RS17645 (3571642) | 3571642..3573783 | - | 2142 | WP_001020973.1 | lysine decarboxylase LdcC | - |
| LM520_RS17650 (3573882) | 3573882..3574841 | - | 960 | WP_000055741.1 | acetyl-CoA carboxylase carboxyl transferase subunit alpha | - |
| LM520_RS17655 (3574854) | 3574854..3578336 | - | 3483 | WP_001294757.1 | DNA polymerase III subunit alpha | - |
| LM520_RS17660 (3578373) | 3578373..3578969 | - | 597 | WP_000569430.1 | ribonuclease HII | - |
| LM520_RS17665 (3578966) | 3578966..3580114 | - | 1149 | WP_000139654.1 | lipid-A-disaccharide synthase | - |
| LM520_RS17670 (3580114) | 3580114..3580902 | - | 789 | WP_000565966.1 | acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase | - |
| LM520_RS17675 (3580906) | 3580906..3581361 | - | 456 | WP_000210739.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| LM520_RS17680 (3581466) | 3581466..3582491 | - | 1026 | WP_001139279.1 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | - |
| LM520_RS17685 (3582495) | 3582495..3582980 | - | 486 | WP_000758956.1 | molecular chaperone Skp | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|