MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 94308 bp
Accession: NZ_CP087045 Location: 1..94308 Organism: Pseudosulfitobacter pseudonitzschiae strain MC52-18 Replicon: plasmid P3
Accession: NZ_CP087045 Location: 1..94308 Organism: Pseudosulfitobacter pseudonitzschiae strain MC52-18 Replicon: plasmid P3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE42_RS21410 (LOE42_21405) | 1..383 | - | 383 | WP_229992977.1 | SMC-Scp complex subunit ScpB | - |
| LOE42_RS21415 (LOE42_21410) | 387..1271 | - | 885 | WP_229939227.1 | DUF1403 family protein | - |
| LOE42_RS21420 (LOE42_21415) | 1430..2524 | + | 1095 | WP_224556253.1 | tyrosine-type recombinase/integrase | - |
| LOE42_RS21425 (LOE42_21420) | 2628..5966 | - | 3339 | WP_224556255.1 | DEAD/DEAH box helicase | - |
| LOE42_RS21430 (LOE42_21425) | 6171..7058 | + | 888 | WP_114273238.1 | Tn3 family transposase ISPsy42 | Transposase |
| LOE42_RS21435 (LOE42_21430) | 7500..8702 | + | 1203 | WP_089852475.1 | Sporulation initiation inhibitor protein Soj | VF |
| LOE42_RS21440 (LOE42_21435) | 8692..9651 | + | 960 | WP_121066477.1 | plasmid partitioning protein RepB | - |
| LOE42_RS21445 (LOE42_21440) | 9891..11048 | + | 1158 | WP_121066480.1 | helix-turn-helix domain-containing protein | - |
| LOE42_RS21450 (LOE42_21445) | 11114..12157 | + | 1044 | WP_114276417.1 | IS5 family transposase ISPmar3 | Transposase |
| LOE42_RS21455 (LOE42_21450) | 12448..14625 | + | 2178 | WP_224556256.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE42_RS21460 (LOE42_21455) | 14725..15198 | + | 474 | WP_114276003.1 | hypothetical protein | - |
| LOE42_RS21465 (LOE42_21460) | 15582..15746 | + | 165 | WP_007803240.1 | hypothetical protein | - |
| LOE42_RS21470 (LOE42_21465) | 15985..17430 | + | 1446 | WP_114276004.1 | hypothetical protein | - |
| LOE42_RS21475 (LOE42_21470) | 17440..17727 | - | 288 | WP_009827212.1 | H-NS histone family protein | - |
| LOE42_RS21480 (LOE42_21475) | 18147..18551 | + | 405 | WP_009827211.1 | single-stranded DNA-binding protein | - |
| LOE42_RS21485 (LOE42_21480) | 18606..19202 | - | 597 | WP_037954955.1 | hypothetical protein | - |
| LOE42_RS21490 (LOE42_21485) | 19242..20147 | + | 906 | WP_114276002.1 | hypothetical protein | - |
| LOE42_RS21495 (LOE42_21490) | 20285..21484 | + | 1200 | WP_121066443.1 | DUF932 domain-containing protein | - |
| LOE42_RS21500 (LOE42_21495) | 21612..22052 | + | 441 | WP_114276349.1 | DNA repair protein RadC | - |
| LOE42_RS21505 (LOE42_21500) | 22162..22680 | + | 519 | WP_114276373.1 | DNA repair protein RadC | - |
| LOE42_RS21510 (LOE42_21505) | 22784..23275 | + | 492 | WP_067297141.1 | hypothetical protein | - |
| LOE42_RS21515 (LOE42_21510) | 23286..23663 | + | 378 | WP_114276348.1 | hypothetical protein | - |
| LOE42_RS21520 (LOE42_21515) | 23665..23862 | + | 198 | WP_047998245.1 | hypothetical protein | - |
| LOE42_RS21525 (LOE42_21520) | 23938..24357 | + | 420 | WP_067297244.1 | hypothetical protein | - |
| LOE42_RS21530 (LOE42_21525) | 24350..24994 | + | 645 | WP_121066445.1 | antitoxin of toxin-antitoxin stability system | - |
| LOE42_RS21535 (LOE42_21530) | 25053..25454 | + | 402 | WP_067297291.1 | MbcA/ParS/Xre antitoxin family protein | - |
| LOE42_RS21540 (LOE42_21535) | 25451..26152 | + | 702 | WP_067297288.1 | RES family NAD+ phosphorylase | - |
| LOE42_RS21545 (LOE42_21540) | 26675..26854 | - | 180 | Protein_27 | hypothetical protein | - |
| LOE42_RS21550 (LOE42_21545) | 26788..29406 | + | 2619 | WP_229997594.1 | strawberry notch family protein | - |
| LOE42_RS21555 (LOE42_21550) | 29383..29829 | - | 447 | Protein_29 | IS6 family transposase | - |
| LOE42_RS21560 (LOE42_21555) | 29899..30489 | + | 591 | WP_052418560.1 | LysR substrate-binding domain-containing protein | - |
| LOE42_RS21565 (LOE42_21560) | 30520..31440 | + | 921 | WP_043755133.1 | HTH-type transcriptional regulator GltC | VF |
| LOE42_RS21570 (LOE42_21565) | 31589..32587 | + | 999 | WP_052418559.1 | TRAP transporter substrate-binding protein DctP | - |
| LOE42_RS21575 (LOE42_21570) | 32653..33198 | + | 546 | WP_081979733.1 | TRAP transporter small permease | - |
| LOE42_RS21580 (LOE42_21575) | 33198..34478 | + | 1281 | WP_052418558.1 | TRAP transporter large permease | - |
| LOE42_RS21585 (LOE42_21580) | 34468..35811 | + | 1344 | WP_224557915.1 | MmgE/PrpD family protein | - |
| LOE42_RS21590 (LOE42_21585) | 35808..36302 | + | 495 | WP_043755128.1 | MaoC family dehydratase | - |
| LOE42_RS21595 (LOE42_21590) | 36299..37534 | + | 1236 | WP_043755124.1 | acyl-CoA dehydrogenase family protein | - |
| LOE42_RS21600 (LOE42_21595) | 37545..38030 | + | 486 | WP_043755138.1 | MaoC family dehydratase | - |
| LOE42_RS21605 (LOE42_21600) | 38027..39256 | + | 1230 | WP_043755120.1 | CoA transferase | - |
| LOE42_RS21610 (LOE42_21605) | 39266..40183 | + | 918 | WP_043755117.1 | CoA ester lyase | - |
| LOE42_RS21620 (LOE42_21615) | 41073..41704 | - | 632 | Protein_42 | IS3 family transposase ISPko4 | Transposase |
| LOE42_RS21625 (LOE42_21620) | 41765..42184 | + | 420 | WP_229940658.1 | hypothetical protein | - |
| LOE42_RS21630 (LOE42_21625) | 42385..43104 | - | 720 | WP_224557875.1 | hypothetical protein | - |
| LOE42_RS21635 (LOE42_21630) | 43261..44121 | + | 861 | WP_224557876.1 | LysR family transcriptional regulator | - |
| LOE42_RS21640 (LOE42_21635) | 44476..45495 | - | 1020 | WP_224557877.1 | IS110 family transposase ISAzs4 | Transposase |
| LOE42_RS21645 (LOE42_21640) | 45621..46046 | + | 426 | WP_224557878.1 | hypothetical protein | - |
| LOE42_RS21650 (LOE42_21645) | 46121..47086 | - | 966 | WP_224557879.1 | Transcriptional regulatory protein AfsQ1 | VF |
| LOE42_RS21655 (LOE42_21650) | 47083..48420 | - | 1338 | WP_224557880.1 | HAMP domain-containing sensor histidine kinase | - |
| LOE42_RS21660 (LOE42_21655) | 48417..48899 | - | 483 | WP_224557881.1 | molybdopterin-dependent oxidoreductase | - |
| LOE42_RS21665 (LOE42_21660) | 49036..49587 | + | 552 | WP_224557882.1 | hypothetical protein | - |
| LOE42_RS21670 (LOE42_21665) | 49589..50161 | + | 573 | WP_224557883.1 | hypothetical protein | - |
| LOE42_RS21675 (LOE42_21670) | 50170..50649 | + | 480 | WP_224557884.1 | hypothetical protein | - |
| LOE42_RS21680 (LOE42_21675) | 50646..51173 | + | 528 | WP_224557885.1 | hypothetical protein | - |
| LOE42_RS21685 (LOE42_21680) | 51170..51694 | + | 525 | WP_224557886.1 | hypothetical protein | - |
| LOE42_RS21690 (LOE42_21685) | 51718..52689 | + | 972 | WP_224557888.1 | hypothetical protein | - |
| LOE42_RS21695 (LOE42_21690) | 52686..54986 | + | 2301 | WP_224557889.1 | VWA domain-containing protein | - |
| LOE42_RS21700 (LOE42_21695) | 54983..55519 | + | 537 | WP_229940780.1 | hypothetical protein | - |
| LOE42_RS21705 (LOE42_21700) | 55516..55728 | + | 213 | WP_224557891.1 | hypothetical protein | - |
| LOE42_RS21710 (LOE42_21705) | 55731..56655 | - | 925 | Protein_60 | IS5 family transposase ISUnCu15 | Transposase |
| LOE42_RS21715 (LOE42_21710) | 56975..58003 | - | 1029 | WP_224557892.1 | IS110 family transposase ISPko7 | Transposase |
| LOE42_RS21720 (LOE42_21715) | 58287..60515 | - | 2229 | WP_224557893.1 | glycosyltransferase | - |
| LOE42_RS21725 (LOE42_21720) | 60512..61576 | - | 1065 | WP_224557894.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| LOE42_RS21730 (LOE42_21725) | 62047..63409 | + | 1363 | WP_229939207.1 | IS3 family transposase ISPko4 | Transposase |
| LOE42_RS21735 (LOE42_21730) | 63512..64312 | + | 801 | WP_284145095.1 | zinc-binding dehydrogenase | - |
| LOE42_RS21740 (LOE42_21735) | 64331..64861 | - | 531 | WP_224557955.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LOE42_RS21745 (LOE42_21740) | 64925..68392 | + | 3468 | WP_224557954.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| LOE42_RS21750 (LOE42_21745) | 68491..69501 | + | 1011 | WP_224557953.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LOE42_RS21755 (LOE42_21750) | 69884..71043 | + | 1160 | WP_224557952.1 | IS3 family transposase ISOba2 | Transposase |
| LOE42_RS21760 (LOE42_21755) | 71067..71264 | - | 198 | WP_224557951.1 | hypothetical protein | - |
| LOE42_RS21765 (LOE42_21760) | 71319..72704 | - | 1386 | WP_224558008.1 | ISKra4 family transposase ISUnCu7 | Transposase |
| LOE42_RS21770 (LOE42_21765) | 72731..73312 | - | 582 | WP_224558009.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| LOE42_RS21775 (LOE42_21770) | 73431..74093 | - | 663 | WP_224558010.1 | plasmid pRiA4b ORF-3 family protein | - |
| LOE42_RS21780 (LOE42_21775) | 74154..74480 | - | 327 | Protein_74 | DEAD/DEAH box helicase family protein | - |
| LOE42_RS21785 (LOE42_21780) | 74656..76110 | - | 1455 | WP_229941945.1 | ATP-binding protein | - |
| LOE42_RS21790 (LOE42_21785) | 76290..77348 | - | 1059 | WP_224557922.1 | HEPN domain-containing protein | - |
| LOE42_RS21795 (LOE42_21790) | 77345..80095 | - | 2751 | WP_224557923.1 | lactate dehydrogenase | - |
| LOE42_RS21800 (LOE42_21795) | 80092..80514 | - | 423 | WP_224557924.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LOE42_RS21805 (LOE42_21800) | 80518..80766 | - | 249 | WP_229939240.1 | plasmid stabilization protein | Antitoxin Detail |
| LOE42_RS21810 (LOE42_21805) | 80914..81903 | - | 990 | WP_224557926.1 | Type IV secretion system protein VirB11 | VF |
| LOE42_RS21815 (LOE42_21810) | 82014..83471 | - | 1458 | WP_224557927.1 | Type IV secretion system protein PtlG | VF |
| LOE42_RS21820 (LOE42_21815) | 83474..84205 | - | 732 | WP_224557928.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LOE42_RS21825 (LOE42_21820) | 84209..84853 | - | 645 | WP_224557929.1 | Type IV secretion system protein PtlE | VF |
| LOE42_RS21830 (LOE42_21825) | 84856..85857 | - | 1002 | WP_224557930.1 | type IV secretion system protein | - |
| LOE42_RS21835 (LOE42_21830) | 85857..86345 | - | 489 | WP_229939238.1 | hypothetical protein | - |
| LOE42_RS21840 (LOE42_21835) | 86349..87158 | - | 810 | WP_224557967.1 | type IV secretion system protein | - |
| LOE42_RS21845 (LOE42_21840) | 87148..88236 | - | 1089 | WP_224557968.1 | lytic transglycosylase domain-containing protein | - |
| LOE42_RS21850 (LOE42_21845) | 88402..89778 | - | 1377 | WP_229997592.1 | Type IV secretion system protein virB4 | VF |
| LOE42_RS21855 (LOE42_21850) | 89762..90136 | - | 375 | WP_229997593.1 | hypothetical protein | - |
| LOE42_RS21860 (LOE42_21855) | 90126..90401 | - | 276 | WP_009819926.1 | VirB3 family type IV secretion system protein | - |
| LOE42_RS21865 (LOE42_21860) | 90425..90709 | - | 285 | WP_224557971.1 | hypothetical protein | VF |
| LOE42_RS21870 (LOE42_21865) | 90706..91287 | - | 582 | WP_224557975.1 | lytic transglycosylase domain-containing protein | - |
| LOE42_RS21875 (LOE42_21870) | 91876..92145 | + | 270 | WP_111550073.1 | hypothetical protein | - |
| LOE42_RS21880 (LOE42_21875) | 92231..92884 | + | 654 | WP_121066465.1 | hypothetical protein | - |
| LOE42_RS21885 (LOE42_21880) | 93105..94262 | + | 1158 | WP_121066468.1 | replication initiation protein RepC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|