MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 82226 bp
Accession: NZ_CP087000 Location: 1..82226 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-109 Replicon: plasmid P5
Accession: NZ_CP087000 Location: 1..82226 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-109 Replicon: plasmid P5
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE07_RS23410 (LOE07_23385) | 1149..2672 | - | 1524 | WP_224557578.1 | aldehyde dehydrogenase family protein | - |
| LOE07_RS23415 (LOE07_23390) | 2802..3758 | - | 957 | WP_224557576.1 | helix-turn-helix domain-containing protein | - |
| LOE07_RS23420 (LOE07_23395) | 4167..5033 | - | 867 | WP_224557575.1 | ECF RNA polymerase sigma factor SigJ | VF |
| LOE07_RS23425 (LOE07_23400) | 5045..5347 | - | 303 | WP_224557574.1 | antibiotic biosynthesis monooxygenase | - |
| LOE07_RS23430 (LOE07_23405) | 5437..6369 | - | 933 | WP_224557573.1 | LysR family transcriptional regulator | - |
| LOE07_RS23435 (LOE07_23410) | 6538..7602 | + | 1065 | WP_224557572.1 | sugar ABC transporter substrate-binding protein | - |
| LOE07_RS23440 (LOE07_23415) | 7684..9204 | + | 1521 | WP_224557571.1 | Xylose import ATP-binding protein XylG | VF |
| LOE07_RS23445 (LOE07_23420) | 9217..10413 | + | 1197 | WP_224557570.1 | sugar ABC transporter permease | - |
| LOE07_RS23450 (LOE07_23425) | 10426..12168 | + | 1743 | WP_224557569.1 | L-arabinonate dehydratase | - |
| LOE07_RS23455 (LOE07_23430) | 12168..13094 | + | 927 | WP_224557568.1 | Gfo/Idh/MocA family oxidoreductase | - |
| LOE07_RS23460 (LOE07_23435) | 13131..14048 | + | 918 | WP_224557566.1 | dihydrodipicolinate synthase family protein | - |
| LOE07_RS23465 (LOE07_23440) | 14137..14697 | + | 561 | WP_224557565.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| LOE07_RS23470 (LOE07_23445) | 14694..15749 | + | 1056 | WP_224557564.1 | dTDP-glucose 4,6-dehydratase 2 | VF |
| LOE07_RS23475 (LOE07_23450) | 15746..16624 | + | 879 | WP_224557563.1 | Glucose-1-phosphate thymidylyltransferase 1 | VF |
| LOE07_RS23480 (LOE07_23455) | 16915..17610 | + | 696 | WP_224557562.1 | PRC-barrel domain-containing protein | - |
| LOE07_RS23485 (LOE07_23460) | 17809..18987 | - | 1179 | WP_224557561.1 | LarC family nickel insertion protein | - |
| LOE07_RS23490 (LOE07_23465) | 18987..20303 | - | 1317 | WP_224557560.1 | lactate racemase domain-containing protein | - |
| LOE07_RS23495 (LOE07_23470) | 20320..21867 | - | 1548 | WP_224557559.1 | altronate dehydratase family protein | - |
| LOE07_RS23500 (LOE07_23475) | 21959..22729 | + | 771 | WP_224557557.1 | GntR family transcriptional regulator | - |
| LOE07_RS23505 (LOE07_23480) | 23198..23473 | - | 276 | WP_224557555.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LOE07_RS23510 (LOE07_23485) | 23466..23759 | - | 294 | WP_224557554.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LOE07_RS23515 (LOE07_23490) | 23830..24735 | - | 906 | WP_224557552.1 | dihydrodipicolinate synthase family protein | - |
| LOE07_RS23520 (LOE07_23495) | 24746..26485 | - | 1740 | WP_224557550.1 | L-arabinonate dehydratase | - |
| LOE07_RS23525 (LOE07_23500) | 26747..28282 | + | 1536 | WP_224557548.1 | aldehyde dehydrogenase (NADP(+)) | - |
| LOE07_RS23530 (LOE07_23505) | 28288..29262 | + | 975 | WP_224557547.1 | 2-hydroxyacid dehydrogenase | - |
| LOE07_RS23535 (LOE07_23510) | 29326..30540 | - | 1215 | WP_224557545.1 | MFS transporter | - |
| LOE07_RS23540 (LOE07_23515) | 30642..31280 | - | 639 | WP_224557543.1 | TetR/AcrR family transcriptional regulator | - |
| LOE07_RS23545 (LOE07_23520) | 31340..31768 | + | 429 | WP_224557541.1 | DUF4345 domain-containing protein | - |
| LOE07_RS23550 (LOE07_23525) | 31999..32928 | - | 930 | WP_224557539.1 | alpha/beta hydrolase | - |
| LOE07_RS23555 (LOE07_23530) | 32915..33220 | - | 306 | WP_037930066.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LOE07_RS23560 (LOE07_23535) | 33349..33582 | + | 234 | WP_224557538.1 | hypothetical protein | - |
| LOE07_RS23565 (LOE07_23540) | 33921..34739 | + | 819 | Protein_32 | GTP-binding protein | - |
| LOE07_RS23570 (LOE07_23545) | 34818..35431 | - | 614 | Protein_33 | Tn3 family transposase TnpR_ISRsp12 | Transposase |
| LOE07_RS23575 (LOE07_23550) | 35568..38455 | + | 2888 | Protein_34 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| LOE07_RS23580 (LOE07_23555) | 38564..39673 | + | 1110 | WP_229939302.1 | ABC transporter substrate-binding protein | - |
| LOE07_RS23585 (LOE07_23560) | 39670..40599 | + | 930 | WP_224557611.1 | ABC transporter permease | - |
| LOE07_RS23590 (LOE07_23565) | 40643..41407 | + | 765 | WP_229939311.1 | ABC transporter permease subunit | - |
| LOE07_RS23595 (LOE07_23570) | 41404..42852 | + | 1449 | WP_224557609.1 | putative ABC transporter ATP-binding protein YejF | VF |
| LOE07_RS23600 (LOE07_23575) | 42883..43200 | - | 318 | WP_224557608.1 | NIPSNAP family protein | - |
| LOE07_RS23605 (LOE07_23580) | 43210..43926 | - | 717 | WP_037930086.1 | FadR/GntR family transcriptional regulator | - |
| LOE07_RS23610 (LOE07_23585) | 43942..44637 | - | 696 | WP_224557607.1 | nickel pincer cofactor biosynthesis protein LarB | - |
| LOE07_RS23615 (LOE07_23590) | 44630..45415 | - | 786 | WP_224557605.1 | adenine nucleotide alpha hydrolase | - |
| LOE07_RS23620 (LOE07_23595) | 45412..46164 | - | 753 | WP_224557604.1 | FCD domain-containing protein | - |
| LOE07_RS23625 (LOE07_23600) | 46431..47393 | + | 963 | WP_224557603.1 | TAXI family TRAP transporter solute-binding subunit | - |
| LOE07_RS23630 (LOE07_23605) | 47479..49353 | + | 1875 | WP_051694623.1 | TRAP transporter permease | - |
| LOE07_RS23635 (LOE07_23610) | 49375..51060 | + | 1686 | WP_224557602.1 | thiamine pyrophosphate-binding protein | - |
| LOE07_RS23640 (LOE07_23615) | 51086..52528 | + | 1443 | WP_224557601.1 | FAD-binding oxidoreductase | - |
| LOE07_RS23645 (LOE07_23620) | 52552..53181 | + | 630 | WP_224557600.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| LOE07_RS23650 (LOE07_23625) | 53597..55270 | - | 1674 | WP_224557599.1 | CHAT domain-containing protein | - |
| LOE07_RS23655 (LOE07_23630) | 55279..55986 | - | 708 | WP_143186815.1 | hypothetical protein | - |
| LOE07_RS23660 (LOE07_23635) | 56125..58851 | - | 2727 | WP_224557598.1 | hypothetical protein | - |
| LOE07_RS23665 (LOE07_23640) | 58821..59867 | - | 1047 | WP_081855458.1 | serine protease | - |
| LOE07_RS23670 (LOE07_23645) | 59873..61843 | - | 1971 | WP_224557597.1 | caspase family protein | - |
| LOE07_RS23675 (LOE07_23650) | 62007..62570 | - | 564 | WP_224557596.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| LOE07_RS23680 (LOE07_23655) | 62858..63445 | + | 588 | WP_037930134.1 | cbb3-type cytochrome c oxidase subunit I | - |
| LOE07_RS23685 (LOE07_23660) | 63603..65057 | - | 1455 | WP_224557595.1 | patatin-like phospholipase family protein | - |
| LOE07_RS23690 (LOE07_23665) | 65099..66424 | - | 1326 | WP_224557594.1 | Sensor protein RstB | VF |
| LOE07_RS23695 (LOE07_23670) | 66421..67116 | - | 696 | WP_224557593.1 | Transcriptional regulatory protein CusR | VF |
| LOE07_RS23700 (LOE07_23675) | 67109..68392 | - | 1284 | WP_229940774.1 | trypsin-like peptidase domain-containing protein | - |
| LOE07_RS23705 (LOE07_23680) | 68550..69170 | + | 621 | WP_224557591.1 | hypothetical protein | - |
| LOE07_RS23710 (LOE07_23685) | 69182..71254 | + | 2073 | WP_224557590.1 | caspase family protein | - |
| LOE07_RS23715 (LOE07_23690) | 71353..72333 | - | 981 | WP_224557589.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE07_RS23720 (LOE07_23695) | 72330..73532 | - | 1203 | WP_224557588.1 | Cell division protein PomZ | VF |
| LOE07_RS23725 (LOE07_23700) | 74158..75168 | + | 1011 | WP_037930116.1 | RepB family plasmid replication initiator protein | - |
| LOE07_RS23730 (LOE07_23705) | 75305..76741 | - | 1437 | WP_224557587.1 | hypothetical protein | - |
| LOE07_RS23735 (LOE07_23710) | 76738..78327 | - | 1590 | WP_224557585.1 | CHAT domain-containing protein | - |
| LOE07_RS23740 (LOE07_23715) | 78902..79657 | - | 756 | WP_224557583.1 | IclR family transcriptional regulator C-terminal domain-containing protein | - |
| LOE07_RS23745 (LOE07_23720) | 79770..80477 | + | 708 | WP_224557581.1 | 3-oxoacid CoA-transferase subunit A | - |
| LOE07_RS23750 (LOE07_23725) | 80474..81160 | + | 687 | WP_229939282.1 | 3-oxoacid CoA-transferase subunit B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|