MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 110564 bp
Accession: NZ_CP086933 Location: 1..110564 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-30 Replicon: plasmid P3
Accession: NZ_CP086933 Location: 1..110564 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-30 Replicon: plasmid P3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE16_RS20935 (LOE16_20925) | 301..1331 | + | 1031 | Protein_1 | IS110 family transposase ISRhru3 | Transposase |
| LOE16_RS20940 (LOE16_20930) | 1799..3781 | + | 1983 | WP_224557482.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE16_RS20945 (LOE16_20935) | 3854..4546 | + | 693 | WP_224557484.1 | regulator | - |
| LOE16_RS20950 (LOE16_20940) | 4546..5199 | + | 654 | WP_067296481.1 | hypothetical protein | - |
| LOE16_RS20955 (LOE16_20945) | 5323..5649 | + | 327 | WP_224557487.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| LOE16_RS20960 (LOE16_20950) | 5646..6163 | + | 518 | Protein_6 | type II toxin-antitoxin system YhaV family toxin | - |
| LOE16_RS20965 (LOE16_20955) | 6702..6983 | - | 282 | WP_224557491.1 | hypothetical protein | - |
| LOE16_RS20970 (LOE16_20960) | 7202..8331 | + | 1130 | WP_224557493.1 | IS3 family transposase ISRosp1 | Transposase |
| LOE16_RS20975 (LOE16_20965) | 8358..8750 | + | 393 | WP_229940884.1 | hypothetical protein | - |
| LOE16_RS20980 (LOE16_20970) | 8931..9752 | - | 822 | WP_074838788.1 | alpha/beta hydrolase | - |
| LOE16_RS20985 (LOE16_20975) | 9749..10789 | - | 1041 | WP_074838791.1 | 4-hydroxy-2-oxovalerate aldolase | - |
| LOE16_RS20990 (LOE16_20980) | 10786..11721 | - | 936 | WP_074838794.1 | acetaldehyde dehydrogenase (acetylating) | - |
| LOE16_RS20995 (LOE16_20985) | 11726..12514 | - | 789 | WP_074838796.1 | fumarylacetoacetate hydrolase family protein | - |
| LOE16_RS21000 (LOE16_20990) | 12553..13554 | - | 1002 | WP_074838799.1 | amidohydrolase family protein | - |
| LOE16_RS21005 (LOE16_20995) | 13652..14506 | - | 855 | WP_074838803.1 | VOC family protein | - |
| LOE16_RS21010 (LOE16_21000) | 14539..15393 | - | 855 | WP_224557497.1 | VOC family protein | - |
| LOE16_RS21015 (LOE16_21005) | 15401..16207 | - | 807 | WP_074838809.1 | ABC transporter ATP-binding protein | - |
| LOE16_RS21020 (LOE16_21010) | 16200..17000 | - | 801 | WP_074838811.1 | ABC transporter ATP-binding protein | - |
| LOE16_RS21025 (LOE16_21015) | 16997..18055 | - | 1059 | WP_224557499.1 | branched-chain amino acid ABC transporter permease | - |
| LOE16_RS21030 (LOE16_21020) | 18048..18920 | - | 873 | WP_074838816.1 | branched-chain amino acid ABC transporter permease | - |
| LOE16_RS21035 (LOE16_21025) | 18947..20113 | - | 1167 | WP_224557500.1 | ABC transporter substrate-binding protein | - |
| LOE16_RS21040 (LOE16_21030) | 20168..20854 | - | 687 | WP_170850597.1 | TetR/AcrR family transcriptional regulator | - |
| LOE16_RS21045 (LOE16_21035) | 20844..21170 | - | 327 | WP_083416143.1 | non-heme iron oxygenase ferredoxin subunit | - |
| LOE16_RS21050 (LOE16_21040) | 21167..21934 | - | 768 | WP_211568985.1 | 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 | VF |
| LOE16_RS21055 (LOE16_21045) | 22000..22515 | - | 516 | WP_074838825.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| LOE16_RS21060 (LOE16_21050) | 22512..23798 | - | 1287 | WP_074838828.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| LOE16_RS21065 (LOE16_21055) | 23827..25029 | - | 1203 | WP_074838830.1 | FAD-dependent oxidoreductase | - |
| LOE16_RS21070 (LOE16_21060) | 25192..25692 | + | 501 | WP_139211499.1 | hypothetical protein | - |
| LOE16_RS21075 (LOE16_21065) | 26012..27178 | - | 1167 | WP_074838835.1 | acyl-CoA dehydrogenase family protein | - |
| LOE16_RS21080 (LOE16_21070) | 27175..29178 | - | 2004 | WP_074838838.1 | biotin carboxylase N-terminal domain-containing protein | - |
| LOE16_RS21085 (LOE16_21075) | 29175..29969 | - | 795 | WP_074838840.1 | crotonase/enoyl-CoA hydratase family protein | - |
| LOE16_RS21090 (LOE16_21080) | 29979..31577 | - | 1599 | WP_074838843.1 | carboxyl transferase domain-containing protein | - |
| LOE16_RS21095 (LOE16_21085) | 31657..32271 | - | 615 | Protein_33 | IS21 family transposase ISPve1 | Transposase |
| LOE16_RS21100 (LOE16_21090) | 32268..33713 | - | 1446 | WP_229939271.1 | IS21 family transposase ISPve1 | Transposase |
| LOE16_RS21105 (LOE16_21095) | 33874..34152 | - | 279 | Protein_35 | transposase | - |
| LOE16_RS21110 (LOE16_21100) | 34441..35208 | + | 768 | WP_224557507.1 | capsular polysaccharide synthesis protein | - |
| LOE16_RS21115 (LOE16_21105) | 35244..35960 | - | 717 | WP_224557509.1 | methyltransferase | - |
| LOE16_RS21120 (LOE16_21110) | 36939..37868 | + | 930 | WP_224557511.1 | DUF2493 domain-containing protein | - |
| LOE16_RS21125 (LOE16_21115) | 38407..38613 | + | 207 | WP_007120662.1 | hypothetical protein | - |
| LOE16_RS21130 (LOE16_21120) | 39166..39723 | + | 558 | WP_224557513.1 | transposase | - |
| LOE16_RS21135 (LOE16_21125) | 39710..42043 | + | 2334 | WP_224557515.1 | T-DNA border endonuclease VirD2 | Relaxase |
| LOE16_RS21140 (LOE16_21130) | 42052..44052 | + | 2001 | WP_224557516.1 | Protein VirD4 | VF |
| LOE16_RS21145 (LOE16_21135) | 44170..44952 | - | 783 | Protein_43 | LysR family transcriptional regulator | - |
| LOE16_RS21150 (LOE16_21140) | 44936..45586 | - | 651 | WP_224557517.1 | copper-binding protein | - |
| LOE16_RS21155 (LOE16_21145) | 45634..46992 | - | 1359 | WP_141102058.1 | copper oxidase | - |
| LOE16_RS21160 (LOE16_21150) | 47004..48467 | - | 1464 | WP_054540802.1 | TolC family protein | - |
| LOE16_RS21165 (LOE16_21155) | 48762..49184 | - | 423 | WP_082386796.1 | hypothetical protein | - |
| LOE16_RS21170 (LOE16_21160) | 49383..49583 | - | 201 | WP_009815466.1 | heavy-metal-associated domain-containing protein | - |
| LOE16_RS21175 (LOE16_21165) | 49724..52231 | + | 2508 | WP_054540801.1 | heavy metal translocating P-type ATPase | - |
| LOE16_RS21180 (LOE16_21170) | 52251..52670 | + | 420 | WP_009503818.1 | Cu(I)-responsive transcriptional regulator | - |
| LOE16_RS21185 (LOE16_21175) | 52794..53666 | + | 873 | WP_009503819.1 | DUF305 domain-containing protein | - |
| LOE16_RS21190 (LOE16_21180) | 53689..54453 | + | 765 | WP_170317858.1 | glutaredoxin | - |
| LOE16_RS21195 (LOE16_21185) | 54554..55293 | - | 740 | Protein_53 | cytochrome c biogenesis protein CcdA | - |
| LOE16_RS21200 (LOE16_21190) | 55290..55781 | - | 492 | WP_009503822.1 | hypothetical protein | - |
| LOE16_RS21205 (LOE16_21195) | 55778..55978 | - | 201 | WP_028095359.1 | hypothetical protein | - |
| LOE16_RS21210 (LOE16_21200) | 56120..57085 | - | 966 | WP_028095360.1 | cation diffusion facilitator family transporter | - |
| LOE16_RS21215 (LOE16_21205) | 57075..57830 | - | 756 | WP_028095361.1 | transglutaminase family protein | - |
| LOE16_RS21220 (LOE16_21210) | 57927..58505 | - | 579 | WP_028095362.1 | cation transporter | - |
| LOE16_RS21225 (LOE16_21215) | 58609..59037 | - | 429 | WP_013959865.1 | IS607 family transposase ISChh1 | Transposase |
| LOE16_RS21230 (LOE16_21220) | 59245..59811 | + | 567 | WP_028095363.1 | SCO family protein | - |
| LOE16_RS21235 (LOE16_21225) | 59817..60239 | + | 423 | WP_028095364.1 | disulfide bond formation protein B | - |
| LOE16_RS21240 (LOE16_21230) | 60236..60895 | + | 660 | WP_028095365.1 | thioredoxin domain-containing protein | - |
| LOE16_RS21245 (LOE16_21235) | 60919..61386 | + | 468 | WP_028095366.1 | copper chaperone PCu(A)C | - |
| LOE16_RS21250 (LOE16_21240) | 61386..62012 | + | 627 | WP_028095367.1 | SCO family protein | - |
| LOE16_RS21255 (LOE16_21245) | 62009..63382 | + | 1374 | WP_028095368.1 | M23 family metallopeptidase | - |
| LOE16_RS21260 (LOE16_21250) | 63386..63841 | + | 456 | WP_028095369.1 | DUF411 domain-containing protein | - |
| LOE16_RS21265 (LOE16_21255) | 63854..64636 | + | 783 | WP_028095370.1 | ZIP family metal transporter | - |
| LOE16_RS21270 (LOE16_21260) | 64665..65123 | + | 459 | WP_224557524.1 | Lipoprotein signal peptidase | VF |
| LOE16_RS21275 (LOE16_21265) | 65090..66703 | + | 1614 | WP_028095371.1 | apolipoprotein N-acyltransferase | - |
| LOE16_RS21280 (LOE16_21270) | 66694..66861 | + | 168 | WP_009503847.1 | hypothetical protein | - |
| LOE16_RS21285 (LOE16_21275) | 66922..68823 | + | 1902 | WP_223870726.1 | penicillin acylase family protein | - |
| LOE16_RS21290 (LOE16_21280) | 68820..69821 | + | 1002 | WP_028095373.1 | cytochrome c oxidase assembly protein | - |
| LOE16_RS21295 (LOE16_21285) | 70041..70553 | - | 513 | WP_035367119.1 | L,D-transpeptidase family protein | - |
| LOE16_RS21300 (LOE16_21290) | 70736..71002 | - | 267 | WP_035367121.1 | zf-TFIIB domain-containing protein | - |
| LOE16_RS21305 (LOE16_21295) | 71037..73391 | - | 2355 | WP_224557525.1 | cation-translocating P-type ATPase | - |
| LOE16_RS21310 (LOE16_21300) | 73574..73858 | + | 285 | WP_028095377.1 | hypothetical protein | - |
| LOE16_RS21315 (LOE16_21305) | 73906..74568 | - | 663 | WP_009503854.1 | L,D-transpeptidase | - |
| LOE16_RS21320 (LOE16_21310) | 74860..75312 | - | 453 | WP_224557528.1 | cytochrome c | - |
| LOE16_RS21325 (LOE16_21315) | 75374..75868 | - | 495 | WP_028095379.1 | DUF411 domain-containing protein | - |
| LOE16_RS21330 (LOE16_21320) | 75868..76797 | - | 930 | WP_223870725.1 | exo-alpha-sialidase | - |
| LOE16_RS21335 (LOE16_21325) | 76815..78260 | - | 1446 | WP_054540800.1 | multicopper oxidase family protein | - |
| LOE16_RS21340 (LOE16_21330) | 78422..78871 | + | 450 | WP_176441066.1 | hypothetical protein | - |
| LOE16_RS21345 (LOE16_21335) | 78866..79318 | - | 453 | WP_054540798.1 | Transcriptional regulator MntR | VF |
| LOE16_RS21350 (LOE16_21340) | 79645..80643 | + | 999 | WP_229939274.1 | multicopper oxidase domain-containing protein | - |
| LOE16_RS21355 (LOE16_21345) | 80640..81821 | + | 1182 | WP_224557529.1 | metal transporter | - |
| LOE16_RS21360 (LOE16_21350) | 82149..83159 | - | 1011 | WP_229940882.1 | hypothetical protein | - |
| LOE16_RS21365 (LOE16_21355) | 83308..84942 | + | 1635 | WP_229939265.1 | Mu transposase C-terminal domain-containing protein | - |
| LOE16_RS21370 (LOE16_21360) | 84959..85825 | + | 867 | WP_224558017.1 | TniB family NTP-binding protein | - |
| LOE16_RS21375 (LOE16_21365) | 86849..87460 | - | 612 | WP_197919471.1 | SMC-Scp complex subunit ScpB | - |
| LOE16_RS21380 (LOE16_21370) | 87508..88392 | - | 885 | WP_229940883.1 | DUF1403 family protein | - |
| LOE16_RS21385 (LOE16_21375) | 88519..89658 | + | 1140 | WP_229940649.1 | tyrosine-type recombinase/integrase | - |
| LOE16_RS21390 (LOE16_21380) | 89760..90251 | + | 492 | Protein_92 | recombinase family protein | - |
| LOE16_RS21395 (LOE16_21385) | 90330..90725 | - | 396 | WP_028288627.1 | PIN domain-containing protein | Toxin Detail |
| LOE16_RS21400 (LOE16_21390) | 90715..90942 | - | 228 | WP_009503866.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| LOE16_RS21405 (LOE16_21395) | 91151..92344 | + | 1194 | WP_009503867.1 | Sporulation initiation inhibitor protein Soj | VF |
| LOE16_RS21410 (LOE16_21400) | 92328..93260 | + | 933 | WP_028288626.1 | plasmid partitioning protein RepB | - |
| LOE16_RS21415 (LOE16_21405) | 93474..94685 | + | 1212 | WP_050525470.1 | plasmid replication protein RepC | - |
| LOE16_RS21420 (LOE16_21410) | 94854..96485 | + | 1632 | WP_229940648.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE16_RS21425 (LOE16_21415) | 96457..96615 | + | 159 | WP_222481223.1 | hypothetical protein | - |
| LOE16_RS21430 (LOE16_21420) | 96771..98138 | - | 1368 | WP_028288624.1 | histidine kinase dimerization/phospho-acceptor domain-containing protein | - |
| LOE16_RS21435 (LOE16_21425) | 98135..98794 | - | 660 | WP_009503873.1 | Transcriptional regulatory protein QseB | VF |
| LOE16_RS21440 (LOE16_21430) | 98940..99257 | + | 318 | WP_028288623.1 | PepSY domain-containing protein | - |
| LOE16_RS21445 (LOE16_21435) | 99214..100599 | + | 1386 | WP_028288622.1 | ferredoxin reductase family protein | - |
| LOE16_RS21450 (LOE16_21440) | 100780..101160 | + | 381 | WP_028288621.1 | PepSY domain-containing protein | - |
| LOE16_RS21455 (LOE16_21445) | 101196..101666 | + | 471 | WP_028288620.1 | DUF2271 domain-containing protein | - |
| LOE16_RS21460 (LOE16_21450) | 101678..103885 | + | 2208 | WP_028288619.1 | PepSY domain-containing protein | - |
| LOE16_RS21465 (LOE16_21455) | 103866..104846 | + | 981 | WP_028288618.1 | FAD:protein FMN transferase | - |
| LOE16_RS21470 (LOE16_21460) | 104852..106759 | + | 1908 | WP_036540305.1 | heavy metal translocating P-type ATPase | - |
| LOE16_RS21475 (LOE16_21465) | 106756..107457 | + | 702 | WP_028288616.1 | VIT family protein | - |
| LOE16_RS21480 (LOE16_21470) | 107593..107754 | + | 162 | WP_224557872.1 | hypothetical protein | - |
| LOE16_RS21485 (LOE16_21475) | 107783..108076 | - | 294 | WP_028288615.1 | hypothetical protein | - |
| LOE16_RS21490 (LOE16_21480) | 108428..108898 | + | 471 | WP_224557871.1 | hypothetical protein | - |
| LOE16_RS21495 (LOE16_21485) | 108939..109877 | + | 939 | WP_224557870.1 | zincin-like metallopeptidase domain-containing protein | - |
| LOE16_RS21500 (LOE16_21490) | 109901..110173 | + | 273 | WP_224557869.1 | DUF6330 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|