MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 95797 bp
Accession: NZ_CP086913 Location: 1..95797 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-34 Replicon: plasmid P4
Accession: NZ_CP086913 Location: 1..95797 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-34 Replicon: plasmid P4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE18_RS21045 (LOE18_21000) | 58..1152 | + | 1095 | WP_224556253.1 | tyrosine-type recombinase/integrase | - |
| LOE18_RS21050 (LOE18_21005) | 1256..4594 | - | 3339 | WP_224556255.1 | DEAD/DEAH box helicase | - |
| LOE18_RS21055 (LOE18_21010) | 4799..5686 | + | 888 | WP_114273238.1 | Tn3 family transposase ISPsy42 | Transposase |
| LOE18_RS21060 (LOE18_21015) | 6128..7330 | + | 1203 | WP_089852475.1 | Sporulation initiation inhibitor protein Soj | VF |
| LOE18_RS21065 (LOE18_21020) | 7320..8279 | + | 960 | WP_121066477.1 | plasmid partitioning protein RepB | - |
| LOE18_RS21070 (LOE18_21025) | 8519..9676 | + | 1158 | WP_121066480.1 | helix-turn-helix domain-containing protein | - |
| LOE18_RS21075 (LOE18_21030) | 9742..10785 | + | 1044 | WP_114276417.1 | IS5 family transposase ISPmar3 | Transposase |
| LOE18_RS21080 (LOE18_21035) | 11076..13253 | + | 2178 | WP_224556256.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE18_RS21085 (LOE18_21040) | 13353..13826 | + | 474 | WP_114276003.1 | hypothetical protein | - |
| LOE18_RS21090 (LOE18_21045) | 14210..14374 | + | 165 | WP_007803240.1 | hypothetical protein | - |
| LOE18_RS21095 (LOE18_21050) | 14613..16058 | + | 1446 | WP_114276004.1 | hypothetical protein | - |
| LOE18_RS21100 (LOE18_21055) | 16068..16355 | - | 288 | WP_009827212.1 | H-NS histone family protein | - |
| LOE18_RS21105 (LOE18_21060) | 16775..17179 | + | 405 | WP_009827211.1 | single-stranded DNA-binding protein | - |
| LOE18_RS21110 (LOE18_21065) | 17234..17830 | - | 597 | WP_037954955.1 | hypothetical protein | - |
| LOE18_RS21115 (LOE18_21070) | 17870..18775 | + | 906 | WP_114276002.1 | hypothetical protein | - |
| LOE18_RS21120 (LOE18_21075) | 18913..20112 | + | 1200 | WP_121066443.1 | DUF932 domain-containing protein | - |
| LOE18_RS21125 (LOE18_21080) | 20240..20680 | + | 441 | WP_114276349.1 | DNA repair protein RadC | - |
| LOE18_RS21130 (LOE18_21085) | 20790..21308 | + | 519 | WP_114276373.1 | DNA repair protein RadC | - |
| LOE18_RS21135 (LOE18_21090) | 21412..21903 | + | 492 | WP_067297141.1 | hypothetical protein | - |
| LOE18_RS21140 (LOE18_21095) | 21914..22291 | + | 378 | WP_114276348.1 | hypothetical protein | - |
| LOE18_RS21145 (LOE18_21100) | 22293..22490 | + | 198 | WP_047998245.1 | hypothetical protein | - |
| LOE18_RS21150 (LOE18_21105) | 22566..22985 | + | 420 | WP_067297244.1 | hypothetical protein | - |
| LOE18_RS21155 (LOE18_21110) | 22978..23622 | + | 645 | WP_121066445.1 | antitoxin of toxin-antitoxin stability system | - |
| LOE18_RS21160 (LOE18_21115) | 23681..24082 | + | 402 | WP_067297291.1 | MbcA/ParS/Xre antitoxin family protein | - |
| LOE18_RS21165 (LOE18_21120) | 24079..24780 | + | 702 | WP_067297288.1 | RES family NAD+ phosphorylase | - |
| LOE18_RS21170 (LOE18_21125) | 25303..25596 | - | 294 | WP_067297285.1 | hypothetical protein | - |
| LOE18_RS21175 (LOE18_21130) | 25773..26153 | + | 381 | Protein_26 | hypothetical protein | - |
| LOE18_RS21180 (LOE18_21135) | 26255..27365 | + | 1111 | Protein_27 | IS110 family transposase ISSfr2 | Transposase |
| LOE18_RS21185 (LOE18_21140) | 27591..30260 | + | 2670 | WP_229939218.1 | strawberry notch family protein | - |
| LOE18_RS21190 (LOE18_21145) | 30237..30683 | - | 447 | Protein_29 | IS6 family transposase | - |
| LOE18_RS21195 (LOE18_21150) | 30753..31343 | + | 591 | WP_052418560.1 | LysR substrate-binding domain-containing protein | - |
| LOE18_RS21200 (LOE18_21155) | 31374..32294 | + | 921 | WP_043755133.1 | HTH-type transcriptional regulator GltC | VF |
| LOE18_RS21205 (LOE18_21160) | 32443..33441 | + | 999 | WP_052418559.1 | TRAP transporter substrate-binding protein DctP | - |
| LOE18_RS21210 (LOE18_21165) | 33507..34052 | + | 546 | WP_081979733.1 | TRAP transporter small permease | - |
| LOE18_RS21215 (LOE18_21170) | 34052..35332 | + | 1281 | WP_052418558.1 | TRAP transporter large permease | - |
| LOE18_RS21220 (LOE18_21175) | 35322..36665 | + | 1344 | WP_224557915.1 | MmgE/PrpD family protein | - |
| LOE18_RS21225 (LOE18_21180) | 36662..37156 | + | 495 | WP_043755128.1 | MaoC family dehydratase | - |
| LOE18_RS21230 (LOE18_21185) | 37153..38388 | + | 1236 | WP_043755124.1 | acyl-CoA dehydrogenase family protein | - |
| LOE18_RS21235 (LOE18_21190) | 38399..38884 | + | 486 | WP_043755138.1 | MaoC family dehydratase | - |
| LOE18_RS21240 (LOE18_21195) | 38881..40110 | + | 1230 | WP_043755120.1 | CoA transferase | - |
| LOE18_RS21245 (LOE18_21200) | 40120..41037 | + | 918 | WP_043755117.1 | CoA ester lyase | - |
| LOE18_RS21255 (LOE18_21210) | 41927..42557 | - | 631 | Protein_42 | IS3 family transposase ISPko4 | Transposase |
| LOE18_RS21260 (LOE18_21215) | 42618..43037 | + | 420 | WP_229940658.1 | hypothetical protein | - |
| LOE18_RS21265 (LOE18_21220) | 43238..43957 | - | 720 | WP_224557875.1 | hypothetical protein | - |
| LOE18_RS21270 (LOE18_21225) | 44114..44974 | + | 861 | WP_224557876.1 | LysR family transcriptional regulator | - |
| LOE18_RS21275 (LOE18_21230) | 45329..46348 | - | 1020 | WP_224557877.1 | IS110 family transposase ISAzs4 | Transposase |
| LOE18_RS21280 (LOE18_21235) | 46474..46899 | + | 426 | WP_224557878.1 | hypothetical protein | - |
| LOE18_RS21285 (LOE18_21240) | 46974..47939 | - | 966 | WP_224557879.1 | Transcriptional regulatory protein AfsQ1 | VF |
| LOE18_RS21290 (LOE18_21245) | 47936..49273 | - | 1338 | WP_224557880.1 | HAMP domain-containing sensor histidine kinase | - |
| LOE18_RS21295 (LOE18_21250) | 49270..49752 | - | 483 | WP_224557881.1 | molybdopterin-dependent oxidoreductase | - |
| LOE18_RS21300 (LOE18_21255) | 49889..50440 | + | 552 | WP_224557882.1 | hypothetical protein | - |
| LOE18_RS21305 (LOE18_21260) | 50442..51014 | + | 573 | WP_224557883.1 | hypothetical protein | - |
| LOE18_RS21310 (LOE18_21265) | 51023..51502 | + | 480 | WP_224557884.1 | hypothetical protein | - |
| LOE18_RS21315 (LOE18_21270) | 51499..52026 | + | 528 | WP_224557885.1 | hypothetical protein | - |
| LOE18_RS21320 (LOE18_21275) | 52023..52547 | + | 525 | WP_224557886.1 | hypothetical protein | - |
| LOE18_RS21325 (LOE18_21280) | 52571..53542 | + | 972 | WP_224557888.1 | hypothetical protein | - |
| LOE18_RS21330 (LOE18_21285) | 53539..55839 | + | 2301 | WP_224557889.1 | VWA domain-containing protein | - |
| LOE18_RS21335 (LOE18_21290) | 55836..56372 | + | 537 | WP_229940780.1 | hypothetical protein | - |
| LOE18_RS21340 (LOE18_21295) | 56369..56581 | + | 213 | WP_224557891.1 | hypothetical protein | - |
| LOE18_RS21345 (LOE18_21300) | 56584..57508 | - | 925 | Protein_60 | IS5 family transposase ISUnCu15 | Transposase |
| LOE18_RS21350 (LOE18_21305) | 57828..58856 | - | 1029 | WP_224557892.1 | IS110 family transposase ISPko7 | Transposase |
| LOE18_RS21355 (LOE18_21310) | 59140..61368 | - | 2229 | WP_224557893.1 | glycosyltransferase | - |
| LOE18_RS21360 (LOE18_21315) | 61365..62429 | - | 1065 | WP_224557894.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| LOE18_RS21365 (LOE18_21320) | 62900..64263 | + | 1364 | WP_229939207.1 | IS3 family transposase ISPko4 | Transposase |
| LOE18_RS21370 (LOE18_21325) | 64366..65166 | + | 801 | WP_284145095.1 | zinc-binding dehydrogenase | - |
| LOE18_RS21375 (LOE18_21330) | 65185..65715 | - | 531 | WP_224557955.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LOE18_RS21380 (LOE18_21335) | 65779..69246 | + | 3468 | WP_224557954.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| LOE18_RS21385 (LOE18_21340) | 69345..70355 | + | 1011 | WP_224557953.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LOE18_RS21390 (LOE18_21345) | 70738..71897 | + | 1160 | WP_224557952.1 | IS3 family transposase ISOba2 | Transposase |
| LOE18_RS21395 (LOE18_21350) | 71921..72118 | - | 198 | WP_224557951.1 | hypothetical protein | - |
| LOE18_RS21400 (LOE18_21355) | 72173..73558 | - | 1386 | WP_224558008.1 | ISKra4 family transposase ISUnCu7 | Transposase |
| LOE18_RS21405 (LOE18_21360) | 73585..74166 | - | 582 | WP_224558009.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| LOE18_RS21410 (LOE18_21365) | 74285..74947 | - | 663 | WP_224558010.1 | plasmid pRiA4b ORF-3 family protein | - |
| LOE18_RS21415 (LOE18_21370) | 75008..75334 | - | 327 | Protein_74 | DEAD/DEAH box helicase family protein | - |
| LOE18_RS21420 (LOE18_21375) | 75510..76964 | - | 1455 | WP_229941945.1 | ATP-binding protein | - |
| LOE18_RS21425 (LOE18_21380) | 77144..78202 | - | 1059 | WP_224557922.1 | HEPN domain-containing protein | - |
| LOE18_RS21430 (LOE18_21385) | 78199..80949 | - | 2751 | WP_224557923.1 | lactate dehydrogenase | - |
| LOE18_RS21435 (LOE18_21390) | 80946..81368 | - | 423 | WP_224557924.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LOE18_RS21440 (LOE18_21395) | 81372..81620 | - | 249 | WP_229939240.1 | plasmid stabilization protein | Antitoxin Detail |
| LOE18_RS21445 (LOE18_21400) | 81768..82757 | - | 990 | WP_224557926.1 | Type IV secretion system protein VirB11 | VF |
| LOE18_RS21450 (LOE18_21405) | 82868..84325 | - | 1458 | WP_224557927.1 | Type IV secretion system protein PtlG | VF |
| LOE18_RS21455 (LOE18_21410) | 84328..85059 | - | 732 | WP_224557928.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LOE18_RS21460 (LOE18_21415) | 85063..85707 | - | 645 | WP_224557929.1 | Type IV secretion system protein PtlE | VF |
| LOE18_RS21465 (LOE18_21420) | 85710..86711 | - | 1002 | WP_224557930.1 | type IV secretion system protein | - |
| LOE18_RS21470 (LOE18_21425) | 86711..87199 | - | 489 | WP_229939238.1 | hypothetical protein | - |
| LOE18_RS21475 (LOE18_21430) | 87203..88012 | - | 810 | WP_224557967.1 | type IV secretion system protein | - |
| LOE18_RS21480 (LOE18_21435) | 88002..89090 | - | 1089 | WP_224557968.1 | lytic transglycosylase domain-containing protein | - |
| LOE18_RS21485 (LOE18_21440) | 89256..91514 | - | 2259 | WP_229940657.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LOE18_RS21490 (LOE18_21445) | 91615..91890 | - | 276 | WP_009819926.1 | VirB3 family type IV secretion system protein | - |
| LOE18_RS21495 (LOE18_21450) | 91914..92198 | - | 285 | WP_224557971.1 | hypothetical protein | VF |
| LOE18_RS21500 (LOE18_21455) | 92195..92776 | - | 582 | WP_224557975.1 | lytic transglycosylase domain-containing protein | - |
| LOE18_RS21505 (LOE18_21465) | 93365..93634 | + | 270 | WP_111550073.1 | hypothetical protein | - |
| LOE18_RS21510 (LOE18_21470) | 93720..94373 | + | 654 | WP_121066465.1 | hypothetical protein | - |
| LOE18_RS21515 (LOE18_21475) | 94594..95751 | + | 1158 | WP_229996724.1 | replication initiation protein RepC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|