MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 110565 bp
Accession: NZ_CP086858 Location: 1..110565 Organism: Pseudosulfitobacter pseudonitzschiae strain SC33-25 Replicon: plasmid P4
Accession: NZ_CP086858 Location: 1..110565 Organism: Pseudosulfitobacter pseudonitzschiae strain SC33-25 Replicon: plasmid P4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE30_RS22855 (LOE30_22850) | 32..316 | - | 285 | WP_028095377.1 | hypothetical protein | - |
| LOE30_RS22860 (LOE30_22855) | 499..2853 | + | 2355 | WP_224557525.1 | cation-translocating P-type ATPase | - |
| LOE30_RS22865 (LOE30_22860) | 2888..3154 | + | 267 | WP_035367121.1 | zf-TFIIB domain-containing protein | - |
| LOE30_RS22870 (LOE30_22865) | 3337..3849 | + | 513 | WP_035367119.1 | L,D-transpeptidase family protein | - |
| LOE30_RS22875 (LOE30_22870) | 4069..5070 | - | 1002 | WP_028095373.1 | cytochrome c oxidase assembly protein | - |
| LOE30_RS22880 (LOE30_22875) | 5067..6968 | - | 1902 | WP_223870726.1 | penicillin acylase family protein | - |
| LOE30_RS22885 (LOE30_22880) | 7029..7196 | - | 168 | WP_009503847.1 | hypothetical protein | - |
| LOE30_RS22890 (LOE30_22885) | 7187..8800 | - | 1614 | WP_028095371.1 | apolipoprotein N-acyltransferase | - |
| LOE30_RS22895 (LOE30_22890) | 8767..9225 | - | 459 | WP_224557524.1 | Lipoprotein signal peptidase | VF |
| LOE30_RS22900 (LOE30_22895) | 9254..10036 | - | 783 | WP_028095370.1 | ZIP family metal transporter | - |
| LOE30_RS22905 (LOE30_22900) | 10049..10504 | - | 456 | WP_028095369.1 | DUF411 domain-containing protein | - |
| LOE30_RS22910 (LOE30_22905) | 10508..11881 | - | 1374 | WP_028095368.1 | M23 family metallopeptidase | - |
| LOE30_RS22915 (LOE30_22910) | 11878..12504 | - | 627 | WP_028095367.1 | SCO family protein | - |
| LOE30_RS22920 (LOE30_22915) | 12504..12971 | - | 468 | WP_028095366.1 | copper chaperone PCu(A)C | - |
| LOE30_RS22925 (LOE30_22920) | 12995..13654 | - | 660 | WP_028095365.1 | thioredoxin domain-containing protein | - |
| LOE30_RS22930 (LOE30_22925) | 13651..14073 | - | 423 | WP_028095364.1 | disulfide bond formation protein B | - |
| LOE30_RS22935 (LOE30_22930) | 14079..14681 | - | 603 | WP_224557520.1 | SCO family protein | - |
| LOE30_RS22940 (LOE30_22935) | 14853..15281 | + | 429 | WP_013959865.1 | IS607 family transposase ISChh1 | Transposase |
| LOE30_RS22945 (LOE30_22940) | 15385..15963 | + | 579 | WP_028095362.1 | cation transporter | - |
| LOE30_RS22950 (LOE30_22945) | 16060..16815 | + | 756 | WP_028095361.1 | transglutaminase family protein | - |
| LOE30_RS22955 (LOE30_22950) | 16805..17770 | + | 966 | WP_028095360.1 | cation diffusion facilitator family transporter | - |
| LOE30_RS22960 (LOE30_22955) | 17912..18112 | + | 201 | WP_028095359.1 | hypothetical protein | - |
| LOE30_RS22965 (LOE30_22960) | 18109..18600 | + | 492 | WP_009503822.1 | hypothetical protein | - |
| LOE30_RS22970 (LOE30_22965) | 18597..19337 | + | 741 | WP_028095358.1 | cytochrome c biogenesis protein CcdA | - |
| LOE30_RS22975 (LOE30_22970) | 19438..20202 | - | 765 | WP_170317858.1 | glutaredoxin | - |
| LOE30_RS22980 (LOE30_22975) | 20225..21097 | - | 873 | WP_009503819.1 | DUF305 domain-containing protein | - |
| LOE30_RS22985 (LOE30_22980) | 21221..21640 | - | 420 | WP_009503818.1 | Cu(I)-responsive transcriptional regulator | - |
| LOE30_RS22990 (LOE30_22985) | 21660..24167 | - | 2508 | WP_054540801.1 | heavy metal translocating P-type ATPase | - |
| LOE30_RS22995 (LOE30_22990) | 24308..24508 | + | 201 | WP_009815466.1 | heavy-metal-associated domain-containing protein | - |
| LOE30_RS23000 (LOE30_22995) | 24707..25129 | + | 423 | WP_082386796.1 | hypothetical protein | - |
| LOE30_RS23005 (LOE30_23000) | 25424..26887 | + | 1464 | WP_054540802.1 | TolC family protein | - |
| LOE30_RS23010 (LOE30_23005) | 26899..28257 | + | 1359 | WP_141102058.1 | copper oxidase | - |
| LOE30_RS23015 (LOE30_23010) | 28305..28955 | + | 651 | WP_224557517.1 | copper-binding protein | - |
| LOE30_RS23020 (LOE30_23015) | 28939..29721 | + | 783 | Protein_33 | LysR family transcriptional regulator | - |
| LOE30_RS23025 (LOE30_23020) | 29839..31839 | - | 2001 | WP_224557516.1 | Protein VirD4 | VF |
| LOE30_RS23030 (LOE30_23025) | 31848..34181 | - | 2334 | WP_224557515.1 | T-DNA border endonuclease VirD2 | Relaxase |
| LOE30_RS23035 (LOE30_23030) | 34168..34725 | - | 558 | WP_224557513.1 | transposase | - |
| LOE30_RS23040 (LOE30_23035) | 35278..35484 | - | 207 | WP_007120662.1 | hypothetical protein | - |
| LOE30_RS23045 (LOE30_23040) | 36023..36952 | - | 930 | WP_224557511.1 | DUF2493 domain-containing protein | - |
| LOE30_RS23050 (LOE30_23045) | 37931..38647 | + | 717 | WP_224557509.1 | methyltransferase | - |
| LOE30_RS23055 (LOE30_23050) | 38683..39450 | - | 768 | WP_224557507.1 | capsular polysaccharide synthesis protein | - |
| LOE30_RS23060 (LOE30_23055) | 39739..40017 | + | 279 | Protein_41 | transposase | - |
| LOE30_RS23065 (LOE30_23060) | 40178..41623 | + | 1446 | WP_229939271.1 | IS21 family transposase ISPve1 | Transposase |
| LOE30_RS23070 (LOE30_23065) | 41620..42234 | + | 615 | Protein_43 | IS21 family transposase ISPve1 | Transposase |
| LOE30_RS23075 (LOE30_23070) | 42314..43912 | + | 1599 | WP_074838843.1 | carboxyl transferase domain-containing protein | - |
| LOE30_RS23080 (LOE30_23075) | 43922..44716 | + | 795 | WP_074838840.1 | crotonase/enoyl-CoA hydratase family protein | - |
| LOE30_RS23085 (LOE30_23080) | 44713..46716 | + | 2004 | WP_074838838.1 | biotin carboxylase N-terminal domain-containing protein | - |
| LOE30_RS23090 (LOE30_23085) | 46713..47879 | + | 1167 | WP_074838835.1 | acyl-CoA dehydrogenase family protein | - |
| LOE30_RS23095 (LOE30_23090) | 48199..48699 | - | 501 | WP_139211499.1 | hypothetical protein | - |
| LOE30_RS23100 (LOE30_23095) | 48862..50064 | + | 1203 | WP_074838830.1 | FAD-dependent oxidoreductase | - |
| LOE30_RS23105 (LOE30_23100) | 50093..51379 | + | 1287 | WP_074838828.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| LOE30_RS23110 (LOE30_23105) | 51376..51891 | + | 516 | WP_074838825.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| LOE30_RS23115 (LOE30_23110) | 51957..52724 | + | 768 | WP_211568985.1 | 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 | VF |
| LOE30_RS23120 (LOE30_23115) | 52721..53047 | + | 327 | WP_083416143.1 | non-heme iron oxygenase ferredoxin subunit | - |
| LOE30_RS23125 (LOE30_23120) | 53037..53723 | + | 687 | WP_170850597.1 | TetR/AcrR family transcriptional regulator | - |
| LOE30_RS23130 (LOE30_23125) | 53778..54944 | + | 1167 | WP_224557500.1 | ABC transporter substrate-binding protein | - |
| LOE30_RS23135 (LOE30_23130) | 54971..55843 | + | 873 | WP_074838816.1 | branched-chain amino acid ABC transporter permease | - |
| LOE30_RS23140 (LOE30_23135) | 55836..56894 | + | 1059 | WP_224557499.1 | branched-chain amino acid ABC transporter permease | - |
| LOE30_RS23145 (LOE30_23140) | 56891..57691 | + | 801 | WP_074838811.1 | ABC transporter ATP-binding protein | - |
| LOE30_RS23150 (LOE30_23145) | 57684..58490 | + | 807 | WP_074838809.1 | ABC transporter ATP-binding protein | - |
| LOE30_RS23155 (LOE30_23150) | 58498..59352 | + | 855 | WP_224557497.1 | VOC family protein | - |
| LOE30_RS23160 (LOE30_23155) | 59385..60239 | + | 855 | WP_074838803.1 | VOC family protein | - |
| LOE30_RS23165 (LOE30_23160) | 60337..61338 | + | 1002 | WP_074838799.1 | amidohydrolase family protein | - |
| LOE30_RS23170 (LOE30_23165) | 61377..62165 | + | 789 | WP_074838796.1 | fumarylacetoacetate hydrolase family protein | - |
| LOE30_RS23175 (LOE30_23170) | 62170..63105 | + | 936 | WP_074838794.1 | acetaldehyde dehydrogenase (acetylating) | - |
| LOE30_RS23180 (LOE30_23175) | 63102..64142 | + | 1041 | WP_074838791.1 | 4-hydroxy-2-oxovalerate aldolase | - |
| LOE30_RS23185 (LOE30_23180) | 64139..64960 | + | 822 | WP_074838788.1 | alpha/beta hydrolase | - |
| LOE30_RS23190 (LOE30_23185) | 65141..65533 | - | 393 | WP_229940884.1 | hypothetical protein | - |
| LOE30_RS23200 (LOE30_23195) | 66908..67189 | + | 282 | WP_224557491.1 | hypothetical protein | - |
| LOE30_RS23205 (LOE30_23200) | 67728..68245 | - | 518 | Protein_70 | type II toxin-antitoxin system YhaV family toxin | - |
| LOE30_RS23210 (LOE30_23205) | 68242..68568 | - | 327 | WP_224557487.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| LOE30_RS23215 (LOE30_23210) | 68692..69345 | - | 654 | WP_067296481.1 | hypothetical protein | - |
| LOE30_RS23220 (LOE30_23215) | 69345..70037 | - | 693 | WP_224557484.1 | regulator | - |
| LOE30_RS23225 (LOE30_23220) | 70110..72092 | - | 1983 | WP_224557482.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE30_RS23230 (LOE30_23225) | 72560..73590 | - | 1031 | Protein_75 | IS110 family transposase ISRhru3 | Transposase |
| LOE30_RS23235 (LOE30_23230) | 73805..74194 | - | 390 | WP_224557867.1 | DUF3768 domain-containing protein | - |
| LOE30_RS23240 (LOE30_23235) | 74282..74554 | - | 273 | WP_224557869.1 | DUF6330 family protein | - |
| LOE30_RS23245 (LOE30_23240) | 74578..75516 | - | 939 | WP_224557870.1 | zincin-like metallopeptidase domain-containing protein | - |
| LOE30_RS23250 (LOE30_23245) | 75557..76027 | - | 471 | WP_224557871.1 | hypothetical protein | - |
| LOE30_RS23255 (LOE30_23250) | 76380..76673 | + | 294 | WP_028288615.1 | hypothetical protein | - |
| LOE30_RS23260 (LOE30_23255) | 76702..76863 | - | 162 | WP_224557872.1 | hypothetical protein | - |
| LOE30_RS23265 (LOE30_23260) | 76999..77700 | - | 702 | WP_028288616.1 | VIT family protein | - |
| LOE30_RS23270 (LOE30_23265) | 77697..79604 | - | 1908 | WP_036540305.1 | heavy metal translocating P-type ATPase | - |
| LOE30_RS23275 (LOE30_23270) | 79610..80590 | - | 981 | WP_028288618.1 | FAD:protein FMN transferase | - |
| LOE30_RS23280 (LOE30_23275) | 80571..82778 | - | 2208 | WP_028288619.1 | PepSY domain-containing protein | - |
| LOE30_RS23285 (LOE30_23280) | 82790..83260 | - | 471 | WP_028288620.1 | DUF2271 domain-containing protein | - |
| LOE30_RS23290 (LOE30_23285) | 83296..83676 | - | 381 | WP_028288621.1 | PepSY domain-containing protein | - |
| LOE30_RS23295 (LOE30_23290) | 83857..85242 | - | 1386 | WP_028288622.1 | ferredoxin reductase family protein | - |
| LOE30_RS23300 (LOE30_23295) | 85199..85516 | - | 318 | WP_028288623.1 | PepSY domain-containing protein | - |
| LOE30_RS23305 (LOE30_23300) | 85662..86321 | + | 660 | WP_009503873.1 | Transcriptional regulatory protein QseB | VF |
| LOE30_RS23310 (LOE30_23305) | 86318..87685 | + | 1368 | WP_028288624.1 | histidine kinase dimerization/phospho-acceptor domain-containing protein | - |
| LOE30_RS23315 (LOE30_23310) | 87842..89603 | - | 1762 | Protein_92 | ParB N-terminal domain-containing protein | - |
| LOE30_RS23320 (LOE30_23315) | 89772..90983 | - | 1212 | WP_050525470.1 | plasmid replication protein RepC | - |
| LOE30_RS23325 (LOE30_23320) | 91197..92129 | - | 933 | WP_028288626.1 | plasmid partitioning protein RepB | - |
| LOE30_RS23330 (LOE30_23325) | 92113..93306 | - | 1194 | WP_009503867.1 | Sporulation initiation inhibitor protein Soj | VF |
| LOE30_RS23335 (LOE30_23330) | 93515..93742 | + | 228 | WP_009503866.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| LOE30_RS23340 (LOE30_23335) | 93732..94127 | + | 396 | WP_028288627.1 | PIN domain-containing protein | Toxin Detail |
| LOE30_RS23345 (LOE30_23340) | 94206..94697 | - | 492 | Protein_98 | recombinase family protein | - |
| LOE30_RS23350 (LOE30_23345) | 94799..95950 | - | 1152 | WP_224557873.1 | tyrosine-type recombinase/integrase | - |
| LOE30_RS23355 (LOE30_23350) | 96065..96949 | + | 885 | WP_037239259.1 | DUF1403 family protein | - |
| LOE30_RS23360 (LOE30_23355) | 96997..97608 | + | 612 | WP_197919471.1 | SMC-Scp complex subunit ScpB | - |
| LOE30_RS23365 (LOE30_23360) | 98632..99497 | - | 866 | Protein_102 | TniB family NTP-binding protein | - |
| LOE30_RS23370 (LOE30_23365) | 99514..101147 | - | 1634 | Protein_103 | transposase | - |
| LOE30_RS23375 (LOE30_23370) | 101308..102306 | + | 999 | WP_224557532.1 | hypothetical protein | - |
| LOE30_RS23380 (LOE30_23375) | 102634..103815 | - | 1182 | WP_224557529.1 | metal transporter | - |
| LOE30_RS23385 (LOE30_23380) | 103812..104810 | - | 999 | WP_229939274.1 | multicopper oxidase domain-containing protein | - |
| LOE30_RS23390 (LOE30_23385) | 105137..105589 | + | 453 | WP_054540798.1 | Transcriptional regulator MntR | VF |
| LOE30_RS23395 (LOE30_23390) | 105584..106033 | - | 450 | WP_176441066.1 | hypothetical protein | - |
| LOE30_RS23400 (LOE30_23395) | 106195..107640 | + | 1446 | WP_054540800.1 | multicopper oxidase family protein | - |
| LOE30_RS23405 (LOE30_23400) | 107658..108587 | + | 930 | WP_223870725.1 | exo-alpha-sialidase | - |
| LOE30_RS23410 (LOE30_23405) | 108587..109081 | + | 495 | WP_028095379.1 | DUF411 domain-containing protein | - |
| LOE30_RS23415 (LOE30_23410) | 109143..109595 | + | 453 | WP_224557528.1 | cytochrome c | - |
| LOE30_RS23420 (LOE30_23415) | 109887..110549 | + | 663 | WP_009503854.1 | L,D-transpeptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|