MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 82230 bp
Accession: NZ_CP086828 Location: 1..82230 Organism: Pseudosulfitobacter pseudonitzschiae strain TC12-5 Replicon: plasmid P4
Accession: NZ_CP086828 Location: 1..82230 Organism: Pseudosulfitobacter pseudonitzschiae strain TC12-5 Replicon: plasmid P4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE28_RS22150 (LOE28_22155) | 374..1003 | - | 630 | WP_224557600.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| LOE28_RS22155 (LOE28_22160) | 1027..2469 | - | 1443 | WP_224557601.1 | FAD-binding oxidoreductase | - |
| LOE28_RS22160 (LOE28_22165) | 2495..4180 | - | 1686 | WP_224557602.1 | thiamine pyrophosphate-binding protein | - |
| LOE28_RS22165 (LOE28_22170) | 4202..6076 | - | 1875 | WP_051694623.1 | TRAP transporter permease | - |
| LOE28_RS22170 (LOE28_22175) | 6162..7124 | - | 963 | WP_224557603.1 | TAXI family TRAP transporter solute-binding subunit | - |
| LOE28_RS22175 (LOE28_22180) | 7391..8143 | + | 753 | WP_224557604.1 | FCD domain-containing protein | - |
| LOE28_RS22180 (LOE28_22185) | 8140..8925 | + | 786 | WP_224557605.1 | adenine nucleotide alpha hydrolase | - |
| LOE28_RS22185 (LOE28_22190) | 8918..9613 | + | 696 | WP_224557607.1 | nickel pincer cofactor biosynthesis protein LarB | - |
| LOE28_RS22190 (LOE28_22195) | 9629..10345 | + | 717 | WP_037930086.1 | FadR/GntR family transcriptional regulator | - |
| LOE28_RS22195 (LOE28_22200) | 10355..10672 | + | 318 | WP_224557608.1 | NIPSNAP family protein | - |
| LOE28_RS22200 (LOE28_22205) | 10703..12151 | - | 1449 | WP_224557609.1 | putative ABC transporter ATP-binding protein YejF | VF |
| LOE28_RS22205 (LOE28_22210) | 12148..12912 | - | 765 | WP_229939311.1 | ABC transporter permease subunit | - |
| LOE28_RS22210 (LOE28_22215) | 12956..13885 | - | 930 | WP_224557611.1 | ABC transporter permease | - |
| LOE28_RS22215 (LOE28_22220) | 13882..15024 | - | 1143 | WP_284145096.1 | ABC transporter substrate-binding protein | - |
| LOE28_RS22220 (LOE28_22225) | 15100..17990 | - | 2891 | Protein_14 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| LOE28_RS22225 (LOE28_22230) | 18156..18743 | + | 588 | WP_101754700.1 | Tn3 family transposase TnpR_ISRsp12 | Transposase |
| LOE28_RS22230 (LOE28_22235) | 18822..19640 | - | 819 | Protein_16 | GTP-binding protein | - |
| LOE28_RS22235 (LOE28_22240) | 19979..20212 | - | 234 | WP_224557538.1 | hypothetical protein | - |
| LOE28_RS22240 (LOE28_22245) | 20341..20646 | + | 306 | WP_037930066.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LOE28_RS22245 (LOE28_22250) | 20633..21562 | + | 930 | WP_224557539.1 | alpha/beta hydrolase | - |
| LOE28_RS22250 (LOE28_22255) | 21793..22221 | - | 429 | WP_224557541.1 | DUF4345 domain-containing protein | - |
| LOE28_RS22255 (LOE28_22260) | 22281..22919 | + | 639 | WP_224557543.1 | TetR/AcrR family transcriptional regulator | - |
| LOE28_RS22260 (LOE28_22265) | 23021..24235 | + | 1215 | WP_224557545.1 | MFS transporter | - |
| LOE28_RS22265 (LOE28_22270) | 24299..25273 | - | 975 | WP_224557547.1 | 2-hydroxyacid dehydrogenase | - |
| LOE28_RS22270 (LOE28_22275) | 25279..26814 | - | 1536 | WP_224557548.1 | aldehyde dehydrogenase (NADP(+)) | - |
| LOE28_RS22275 (LOE28_22280) | 27076..28815 | + | 1740 | WP_224557550.1 | L-arabinonate dehydratase | - |
| LOE28_RS22280 (LOE28_22285) | 28826..29731 | + | 906 | WP_224557552.1 | dihydrodipicolinate synthase family protein | - |
| LOE28_RS22285 (LOE28_22290) | 29802..30095 | + | 294 | WP_224557554.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LOE28_RS22290 (LOE28_22295) | 30088..30363 | + | 276 | WP_224557555.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LOE28_RS22295 (LOE28_22300) | 30832..31602 | - | 771 | WP_224557557.1 | GntR family transcriptional regulator | - |
| LOE28_RS22300 (LOE28_22305) | 31694..33241 | + | 1548 | WP_224557559.1 | altronate dehydratase family protein | - |
| LOE28_RS22305 (LOE28_22310) | 33258..34574 | + | 1317 | WP_224557560.1 | lactate racemase domain-containing protein | - |
| LOE28_RS22310 (LOE28_22315) | 34574..35752 | + | 1179 | WP_224557561.1 | LarC family nickel insertion protein | - |
| LOE28_RS22315 (LOE28_22320) | 35951..36646 | - | 696 | WP_224557562.1 | PRC-barrel domain-containing protein | - |
| LOE28_RS22320 (LOE28_22325) | 36937..37815 | - | 879 | WP_224557563.1 | Glucose-1-phosphate thymidylyltransferase 1 | VF |
| LOE28_RS22325 (LOE28_22330) | 37812..38867 | - | 1056 | WP_224557564.1 | dTDP-glucose 4,6-dehydratase 2 | VF |
| LOE28_RS22330 (LOE28_22335) | 38864..39424 | - | 561 | WP_224557565.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| LOE28_RS22335 (LOE28_22340) | 39513..40430 | - | 918 | WP_224557566.1 | dihydrodipicolinate synthase family protein | - |
| LOE28_RS22340 (LOE28_22345) | 40467..41393 | - | 927 | WP_224557568.1 | Gfo/Idh/MocA family oxidoreductase | - |
| LOE28_RS22345 (LOE28_22350) | 41393..43135 | - | 1743 | WP_224557569.1 | L-arabinonate dehydratase | - |
| LOE28_RS22350 (LOE28_22355) | 43148..44344 | - | 1197 | WP_224557570.1 | sugar ABC transporter permease | - |
| LOE28_RS22355 (LOE28_22360) | 44357..45877 | - | 1521 | WP_224557571.1 | Xylose import ATP-binding protein XylG | VF |
| LOE28_RS22360 (LOE28_22365) | 45959..47023 | - | 1065 | WP_224557572.1 | sugar ABC transporter substrate-binding protein | - |
| LOE28_RS22365 (LOE28_22370) | 47192..48124 | + | 933 | WP_224557573.1 | LysR family transcriptional regulator | - |
| LOE28_RS22370 (LOE28_22375) | 48214..48516 | + | 303 | WP_224557574.1 | antibiotic biosynthesis monooxygenase | - |
| LOE28_RS22375 (LOE28_22380) | 48528..49394 | + | 867 | WP_224557575.1 | ECF RNA polymerase sigma factor SigJ | VF |
| LOE28_RS22380 (LOE28_22385) | 49803..50759 | + | 957 | WP_224557576.1 | helix-turn-helix domain-containing protein | - |
| LOE28_RS22385 (LOE28_22390) | 50889..52412 | + | 1524 | WP_224557578.1 | aldehyde dehydrogenase family protein | - |
| LOE28_RS22390 (LOE28_22395) | 52581..54416 | + | 1836 | WP_224557579.1 | Serine/threonine-protein kinase toxin HipA | VF |
| LOE28_RS22395 (LOE28_22400) | 54625..55311 | - | 687 | WP_229939282.1 | 3-oxoacid CoA-transferase subunit B | - |
| LOE28_RS22400 (LOE28_22405) | 55308..56015 | - | 708 | WP_224557581.1 | 3-oxoacid CoA-transferase subunit A | - |
| LOE28_RS22405 (LOE28_22410) | 56128..56883 | + | 756 | WP_224557583.1 | IclR family transcriptional regulator C-terminal domain-containing protein | - |
| LOE28_RS22410 (LOE28_22415) | 57458..59047 | + | 1590 | WP_224557585.1 | CHAT domain-containing protein | - |
| LOE28_RS22415 (LOE28_22420) | 59044..60480 | + | 1437 | WP_224557587.1 | hypothetical protein | - |
| LOE28_RS22420 (LOE28_22425) | 60617..61627 | - | 1011 | WP_037930116.1 | RepB family plasmid replication initiator protein | - |
| LOE28_RS22425 (LOE28_22430) | 62253..63455 | + | 1203 | WP_224557588.1 | Cell division protein PomZ | VF |
| LOE28_RS22430 (LOE28_22435) | 63452..64432 | + | 981 | WP_224557589.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE28_RS22435 (LOE28_22440) | 64531..66615 | - | 2085 | WP_229940894.1 | caspase family protein | - |
| LOE28_RS22440 (LOE28_22445) | 66615..67235 | - | 621 | WP_224557591.1 | hypothetical protein | - |
| LOE28_RS22445 (LOE28_22450) | 67426..68676 | + | 1251 | WP_229940663.1 | trypsin-like peptidase domain-containing protein | - |
| LOE28_RS22450 (LOE28_22455) | 68669..69364 | + | 696 | WP_224557593.1 | Transcriptional regulatory protein CusR | VF |
| LOE28_RS22455 (LOE28_22460) | 69361..70686 | + | 1326 | WP_224557594.1 | Sensor protein RstB | VF |
| LOE28_RS22460 (LOE28_22465) | 70728..72182 | + | 1455 | WP_224557595.1 | patatin-like phospholipase family protein | - |
| LOE28_RS22465 (LOE28_22470) | 72340..72927 | - | 588 | WP_037930134.1 | cbb3-type cytochrome c oxidase subunit I | - |
| LOE28_RS22470 (LOE28_22475) | 73215..73778 | + | 564 | WP_224557596.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| LOE28_RS22475 (LOE28_22480) | 73939..75912 | + | 1974 | WP_229940665.1 | caspase family protein | - |
| LOE28_RS22480 (LOE28_22485) | 75918..76964 | + | 1047 | WP_081855458.1 | serine protease | - |
| LOE28_RS22485 (LOE28_22490) | 76934..79660 | + | 2727 | WP_224557598.1 | hypothetical protein | - |
| LOE28_RS22490 (LOE28_22495) | 79799..80506 | + | 708 | WP_143186815.1 | hypothetical protein | - |
| LOE28_RS22495 (LOE28_22500) | 80515..82188 | + | 1674 | WP_224557599.1 | CHAT domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|