MGE detailed information
MGE type: Conjugative plasmid MGE length: 117620 bp
Accession: NZ_CP086481 Location: 1..117620 Organism: Escherichia coli strain Ec-050-T20-MAC Replicon: plasmid pEc-050-T20-MAC_1
Accession: NZ_CP086481 Location: 1..117620 Organism: Escherichia coli strain Ec-050-T20-MAC Replicon: plasmid pEc-050-T20-MAC_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN46_RS23280 (46) | 46..1077 | + | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| LNN46_RS23285 (1773) | 1773..1931 | + | 159 | WP_000841008.1 | hypothetical protein | - |
| LNN46_RS23290 (1986) | 1986..2255 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| LNN46_RS23295 (2255) | 2255..2533 | + | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| LNN46_RS23300 (2573) | 2573..3421 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| LNN46_RS23305 (3538) | 3538..4011 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| LNN46_RS23310 (4488) | 4488..4754 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| LNN46_RS23315 (4754) | 4754..5248 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| LNN46_RS23320 (5304) | 5304..5906 | - | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| LNN46_RS23325 (6260) | 6260..6502 | + | 243 | Protein_9 | hypothetical protein | - |
| LNN46_RS23330 (6673) | 6673..7872 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| LNN46_RS23335 (7882) | 7882..8070 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| LNN46_RS23340 (8185) | 8185..9294 | + | 1110 | Protein_12 | protein YagA | - |
| LNN46_RS23345 (9573) | 9573..11453 | + | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| LNN46_RS23350 (11471) | 11471..11818 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| LNN46_RS23355 (11937) | 11937..12284 | + | 348 | WP_001407239.1 | DUF6404 family protein | - |
| LNN46_RS23360 (12304) | 12304..12894 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| LNN46_RS23365 (12894) | 12894..13151 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| LNN46_RS23370 (13502) | 13502..14503 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| LNN46_RS23375 (14679) | 14679..15023 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| LNN46_RS23380 (15609) | 15609..16313 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LNN46_RS23385 (16529) | 16529..17344 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| LNN46_RS23390 (17431) | 17431..17673 | + | 243 | Protein_22 | phosphoglucosamine mutase | - |
| LNN46_RS23395 (17909) | 17909..19402 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| LNN46_RS23400 (19514) | 19514..19819 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| LNN46_RS23405 (19847) | 19847..21061 | - | 1215 | WP_039026029.1 | Inner membrane transport protein YdhC | ARG |
| LNN46_RS23410 (21278) | 21278..22162 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| LNN46_RS23415 (22193) | 22193..22465 | - | 273 | Protein_27 | IS91 family transposase ISVsa3 | Transposase |
| LNN46_RS23420 (22499) | 22499..24871 | - | 2373 | Protein_28 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LNN46_RS23425 (25025) | 25025..25885 | - | 861 | WP_021561477.1 | Beta-lactamase TEM | ARG |
| LNN46_RS23430 (26007) | 26007..26711 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LNN46_RS23435 (26602) | 26602..27573 | - | 972 | WP_242879857.1 | Dihydropteroate synthase | ARG |
| LNN46_RS23440 (27567) | 27567..27914 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| LNN46_RS23445 (28031) | 28031..28869 | - | 839 | Protein_33 | Streptomycin 3''-adenylyltransferase | ARG |
| LNN46_RS23450 (28962) | 28962..29435 | - | 474 | WP_000777555.1 | Dihydrofolate reductase type 1 | ARG |
| LNN46_RS23455 (29592) | 29592..30605 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| LNN46_RS23460 (30952) | 30952..31236 | - | 285 | Protein_36 | recombinase family protein | - |
| LNN46_RS23465 (31302) | 31302..32006 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LNN46_RS23470 (32040) | 32040..32297 | - | 258 | WP_001596999.1 | hypothetical protein | - |
| LNN46_RS23475 (32342) | 32342..33268 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| LNN46_RS23480 (33800) | 33800..34213 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| LNN46_RS23485 (34215) | 34215..34994 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| LNN46_RS23490 (35174) | 35174..35818 | + | 645 | WP_001144036.1 | ParA family protein | - |
| LNN46_RS23495 (35905) | 35905..36213 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| LNN46_RS23500 (36627) | 36627..37607 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| LNN46_RS23505 (37600) | 37600..38016 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| LNN46_RS23510 (38018) | 38018..39292 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| LNN46_RS23515 (39292) | 39292..39729 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LNN46_RS23520 (39726) | 39726..39974 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| LNN46_RS23525 (40392) | 40392..41294 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| LNN46_RS23530 (41291) | 41291..41602 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| LNN46_RS23535 (41679) | 41679..42362 | + | 684 | WP_000086178.1 | DNA methylase | - |
| LNN46_RS23540 (42363) | 42363..42584 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| LNN46_RS23545 (42544) | 42544..43030 | + | 487 | Protein_53 | DUF1380 family protein | - |
| LNN46_RS23550 (43081) | 43081..43851 | + | 771 | WP_001044393.1 | hypothetical protein | - |
| LNN46_RS23555 (44269) | 44269..44694 | + | 426 | WP_001198886.1 | antirestriction protein | - |
| LNN46_RS23560 (44741) | 44741..45163 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| LNN46_RS23565 (45160) | 45160..45351 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| LNN46_RS23570 (45629) | 45629..47296 | - | 1668 | WP_001762494.1 | group II intron reverse transcriptase/maturase | - |
| LNN46_RS23575 (48027) | 48027..48095 | - | 69 | Protein_59 | pilus protein | - |
| LNN46_RS23580 (48464) | 48464..48991 | + | 528 | WP_001276110.1 | single-stranded DNA-binding protein | - |
| LNN46_RS23585 (49049) | 49049..49282 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| LNN46_RS23590 (49341) | 49341..51299 | + | 1959 | WP_001145453.1 | ParB/RepB/Spo0J family partition protein | - |
| LNN46_RS23595 (51354) | 51354..51788 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| LNN46_RS23600 (51785) | 51785..52504 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| LNN46_RS23605 (52501) | 52501..53097 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| LNN46_RS23610 (53560) | 53560..54060 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| LNN46_RS23615 (54789) | 54789..55223 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| LNN46_RS23620 (55315) | 55315..55581 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| LNN46_RS23625 (55646) | 55646..56587 | + | 942 | WP_000038339.1 | Recombination-promoting nuclease RpnA | VF |
| LNN46_RS23630 (56649) | 56649..56819 | + | 171 | WP_000150325.1 | hypothetical protein | - |
| LNN46_RS23635 (56850) | 56850..57101 | - | 252 | WP_065793177.1 | helix-turn-helix transcriptional regulator | - |
| LNN46_RS23640 (57681) | 57681..58215 | + | 535 | Protein_72 | DUF4942 domain-containing protein | - |
| LNN46_RS23645 (58278) | 58278..59024 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| LNN46_RS23650 (59039) | 59039..60580 | - | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
| LNN46_RS23655 (60776) | 60776..61117 | + | 342 | Protein_75 | DUF4942 domain-containing protein | - |
| LNN46_RS23660 (61203) | 61203..61538 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LNN46_RS23665 (61772) | 61772..62104 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| LNN46_RS23670 (62115) | 62115..64814 | + | 2700 | WP_006855641.1 | Protein TraI | Relaxase |
| LNN46_RS23675 (64851) | 64851..67142 | - | 2292 | WP_001289275.1 | F-type conjugative transfer protein TrbC | - |
| LNN46_RS23680 (67135) | 67135..68205 | - | 1071 | WP_000151576.1 | IncI1-type conjugal transfer protein TrbB | - |
| LNN46_RS23685 (68224) | 68224..69432 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (69612) | 69612..69674 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (69612) | 69612..69674 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (69612) | 69612..69674 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (69612) | 69612..69674 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| LNN46_RS23690 (69724) | 69724..69876 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| LNN46_RS23695 (69948) | 69948..70199 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| LNN46_RS26400 (70699) | 70699..70794 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| LNN46_RS23705 (70859) | 70859..70996 | - | 138 | WP_047088497.1 | hypothetical protein | - |
| LNN46_RS23710 (71041) | 71041..72267 | - | 1227 | WP_024186316.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LNN46_RS23715 (72326) | 72326..72730 | + | 405 | WP_001175009.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LNN46_RS23720 (73062) | 73062..73271 | - | 210 | WP_032178830.1 | hemolysin expression modulator Hha | - |
| LNN46_RS23725 (73369) | 73369..74031 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LNN46_RS23730 (74102) | 74102..76270 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| LNN46_RS23735 (76367) | 76367..76951 | - | 585 | WP_001476649.1 | IncI1-type conjugal transfer protein TraX | - |
| LNN46_RS23740 (76980) | 76980..78182 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| LNN46_RS23745 (78149) | 78149..78763 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| LNN46_RS23750 (78763) | 78763..81807 | - | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| LNN46_RS23755 (81897) | 81897..82697 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| LNN46_RS23760 (82681) | 82681..82869 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| LNN46_RS23765 (82933) | 82933..83337 | - | 405 | WP_021497835.1 | IncI1-type conjugal transfer protein TraR | - |
| LNN46_RS23770 (83388) | 83388..83915 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| LNN46_RS23775 (83915) | 83915..84619 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| LNN46_RS23780 (84619) | 84619..85908 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| LNN46_RS23785 (85911) | 85911..86894 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| LNN46_RS23790 (86905) | 86905..87597 | - | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| LNN46_RS23795 (87594) | 87594..87941 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| LNN46_RS23800 (87959) | 87959..91723 | - | 3765 | WP_033560228.1 | DUF5710 domain-containing protein | - |
| LNN46_RS23805 (91813) | 91813..92364 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| LNN46_RS23810 (92379) | 92379..92669 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| LNN46_RS23815 (92666) | 92666..93814 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| LNN46_RS23820 (93811) | 93811..94629 | - | 819 | WP_032220737.1 | hypothetical protein | VF |
| LNN46_RS23825 (94626) | 94626..95084 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| LNN46_RS23830 (95479) | 95479..96063 | - | 585 | WP_000977525.1 | histidine phosphatase family protein | - |
| LNN46_RS23835 (96123) | 96123..97325 | - | 1203 | WP_065793176.1 | conjugal transfer protein TraF | - |
| LNN46_RS23840 (97411) | 97411..98235 | - | 825 | WP_001690630.1 | conjugal transfer protein TraE | - |
| LNN46_RS23845 (98386) | 98386..99540 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| LNN46_RS23850 (99539) | 99539..99823 | + | 285 | WP_187642572.1 | pilus assembly protein PilV | - |
| LNN46_RS23855 (101174) | 101174..102598 | - | 1425 | WP_001389385.1 | hypothetical protein | VF |
| LNN46_RS23860 (102598) | 102598..103254 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| LNN46_RS23865 (103239) | 103239..103799 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| LNN46_RS23870 (103809) | 103809..104423 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| LNN46_RS23875 (104441) | 104441..105538 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LNN46_RS23880 (105551) | 105551..107104 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| LNN46_RS23885 (107115) | 107115..107567 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| LNN46_RS23890 (107554) | 107554..108849 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| LNN46_RS23895 (108842) | 108842..110524 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| LNN46_RS23900 (110538) | 110538..110975 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| LNN46_RS23905 (110975) | 110975..112042 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| LNN46_RS23910 (112716) | 112716..113168 | - | 453 | WP_000008892.1 | hypothetical protein | - |
| LNN46_RS23915 (113211) | 113211..113465 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| LNN46_RS23920 (113733) | 113733..114299 | - | 567 | WP_000776428.1 | protein TraD | - |
| LNN46_RS23925 (114313) | 114313..114996 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| LNN46_RS23930 (115250) | 115250..115783 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| LNN46_RS23935 (116225) | 116225..116512 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| LNN46_RS23940 (116430) | 116430..116660 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|