MGE detailed information
MGE type: Conjugative plasmid MGE length: 140264 bp
Accession: NZ_CP086139 Location: 1..140264 Organism: Bradyrhizobium barranii subsp. barranii strain 144S4 Replicon: plasmid pBb144S4c
Accession: NZ_CP086139 Location: 1..140264 Organism: Bradyrhizobium barranii subsp. barranii strain 144S4 Replicon: plasmid pBb144S4c
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4G43_RS54445 (J4G43_054625) | 1..762 | + | 762 | WP_011090937.1 | IS21 family transposase ISFK1 | Transposase |
| J4G43_RS54450 (J4G43_054630) | 793..1002 | - | 210 | WP_225006043.1 | WGR domain-containing protein | - |
| J4G43_RS54455 (J4G43_054635) | 1496..2911 | - | 1416 | Protein_2 | IS21 family transposase IS1631 | Transposase |
| J4G43_RS54460 (J4G43_054640) | 4169..4312 | + | 144 | WP_155258293.1 | hypothetical protein | - |
| J4G43_RS54465 (J4G43_054645) | 4447..4601 | + | 155 | Protein_4 | IS3 family transposase ISPpu29 | Transposase |
| J4G43_RS54470 (J4G43_054650) | 4799..5155 | + | 357 | WP_028154558.1 | hypothetical protein | - |
| J4G43_RS54475 (J4G43_054655) | 5468..6142 | + | 675 | Protein_6 | C48 family peptidase | - |
| J4G43_RS54480 (J4G43_054660) | 6225..6461 | - | 237 | Protein_7 | IS5/IS1182 family transposase | - |
| J4G43_RS54485 (J4G43_054665) | 7011..7496 | - | 486 | WP_028154266.1 | hypothetical protein | - |
| J4G43_RS54490 (J4G43_054670) | 7808..8041 | - | 234 | WP_080586809.1 | DUF2188 domain-containing protein | - |
| J4G43_RS54495 (J4G43_054675) | 8615..9526 | - | 912 | WP_049807992.1 | hypothetical protein | - |
| J4G43_RS55235 | 10257..10634 | + | 378 | Protein_11 | AAA family ATPase | - |
| J4G43_RS54505 (J4G43_054685) | 10906..11157 | + | 252 | WP_028154263.1 | hypothetical protein | - |
| J4G43_RS54510 (J4G43_054690) | 11142..11603 | - | 462 | Protein_13 | hypothetical protein | - |
| J4G43_RS54515 (J4G43_054695) | 12686..12910 | - | 225 | Protein_14 | ISNCY family transposase ISBj12 | Transposase |
| J4G43_RS54520 (J4G43_054700) | 13807..13995 | + | 189 | WP_060913273.1 | hypothetical protein | - |
| J4G43_RS54525 (J4G43_054705) | 14017..14607 | + | 591 | WP_038975248.1 | hypothetical protein | - |
| J4G43_RS54530 (J4G43_054710) | 14961..16193 | + | 1233 | WP_028154428.1 | ABC transporter substrate-binding protein | - |
| J4G43_RS54535 (J4G43_054715) | 16498..17424 | + | 927 | Protein_18 | IS110 family transposase | - |
| J4G43_RS54540 (J4G43_054720) | 17430..18049 | + | 620 | Protein_19 | DTW domain-containing protein | - |
| J4G43_RS54545 (J4G43_054725) | 18081..18572 | - | 492 | Protein_20 | IS256 family transposase ISCce2 | Transposase |
| J4G43_RS54550 (J4G43_054730) | 18623..18931 | + | 309 | WP_028154658.1 | hypothetical protein | - |
| J4G43_RS54555 (J4G43_054735) | 18965..19732 | - | 768 | WP_038945163.1 | hypothetical protein | - |
| J4G43_RS54560 (J4G43_054740) | 19822..21006 | - | 1185 | Protein_23 | IS21 family transposase IS1631 | Transposase |
| J4G43_RS54565 (J4G43_054745) | 21163..22227 | - | 1065 | WP_225006049.1 | IS630 family transposase ISRj1 | Transposase |
| J4G43_RS54570 (J4G43_054750) | 22247..22840 | - | 594 | WP_080587093.1 | SEC-C domain-containing protein | - |
| J4G43_RS54575 (J4G43_054755) | 23046..24250 | - | 1205 | Protein_26 | IS1380 family transposase ISBdi2 | Transposase |
| J4G43_RS54580 (J4G43_054760) | 24557..24985 | - | 429 | WP_035680217.1 | IS66 family transposase ISFpe1 | Transposase |
| J4G43_RS54585 (J4G43_054765) | 25167..25493 | + | 327 | WP_225006052.1 | hypothetical protein | - |
| J4G43_RS54590 (J4G43_054770) | 26909..27559 | - | 651 | WP_063712394.1 | IS66 family transposase ISSme3 | Transposase |
| J4G43_RS54595 (J4G43_054775) | 27556..29106 | - | 1551 | WP_035681142.1 | IS66 family transposase IS693 | Transposase |
| J4G43_RS54600 (J4G43_054780) | 29157..29513 | - | 357 | WP_018273742.1 | IS66 family transposase IS693 | Transposase |
| J4G43_RS55565 | 29510..29932 | - | 423 | WP_018273743.1 | IS66 family transposase ISSme3 | Transposase |
| J4G43_RS54610 (J4G43_054790) | 30392..31936 | - | 1545 | WP_224517700.1 | IS66 family transposase ISPpa7 | Transposase |
| J4G43_RS54615 (J4G43_054795) | 32525..34612 | + | 2088 | WP_049810452.1 | Tn3 family transposase TnpR_ISRsp12 | Transposase |
| J4G43_RS54620 (J4G43_054800) | 34600..34908 | - | 309 | WP_060907863.1 | IS66 family transposase ISPpa7 | Transposase |
| J4G43_RS54625 (J4G43_054805) | 34905..35303 | - | 399 | WP_026192391.1 | IS66 family transposase ISPpa7 | Transposase |
| J4G43_RS54630 (J4G43_054810) | 35481..36167 | - | 687 | WP_038946061.1 | SMC-Scp complex subunit ScpB | - |
| J4G43_RS54635 (J4G43_054815) | 36185..37105 | - | 921 | WP_225006054.1 | DUF1403 family protein | - |
| J4G43_RS54640 (J4G43_054820) | 37435..37689 | + | 255 | WP_208089682.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| J4G43_RS54645 (J4G43_054825) | 37689..38096 | + | 408 | WP_208089683.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| J4G43_RS54650 (J4G43_054830) | 38093..39190 | + | 1098 | WP_208089684.1 | tyrosine-type recombinase/integrase | - |
| J4G43_RS54655 (J4G43_054835) | 39332..39598 | + | 267 | WP_035679268.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| J4G43_RS54660 (J4G43_054840) | 39598..40020 | + | 423 | WP_035679271.1 | type II toxin-antitoxin system VapC family toxin | - |
| J4G43_RS54665 (J4G43_054845) | 40230..41549 | - | 1320 | WP_038381010.1 | plasmid replication protein RepC | - |
| J4G43_RS54670 (J4G43_054850) | 41719..42738 | - | 1020 | WP_208089685.1 | plasmid partitioning protein RepB | - |
| J4G43_RS54675 (J4G43_054855) | 42811..43998 | - | 1188 | WP_035679254.1 | Sporulation initiation inhibitor protein Soj | VF |
| J4G43_RS54680 (J4G43_054860) | 44411..45037 | + | 627 | WP_208089669.1 | Acyl-homoserine-lactone synthase | VF |
| J4G43_RS54685 (J4G43_054865) | 45043..46015 | + | 973 | Protein_48 | Type IV secretion system protein VirB11 | VF |
| J4G43_RS54690 (J4G43_054870) | 46005..46385 | + | 381 | WP_028152998.1 | TrbC/VirB2 family protein | - |
| J4G43_RS54695 (J4G43_054875) | 46378..46677 | + | 300 | WP_028152997.1 | conjugal transfer protein TrbD | - |
| J4G43_RS54700 (J4G43_054880) | 46687..49140 | + | 2454 | WP_208089668.1 | conjugal transfer protein TrbE | - |
| J4G43_RS54705 (J4G43_054885) | 49112..49909 | + | 798 | WP_028152995.1 | P-type conjugative transfer protein TrbJ | - |
| J4G43_RS54710 (J4G43_054890) | 49906..50091 | + | 186 | WP_208089667.1 | DUF2749 domain-containing protein | - |
| J4G43_RS54715 (J4G43_054895) | 50108..51370 | + | 1263 | WP_208089686.1 | P-type conjugative transfer protein TrbL | - |
| J4G43_RS54720 (J4G43_054900) | 51805..52257 | + | 453 | WP_060913253.1 | multiubiquitin domain-containing protein | - |
| J4G43_RS54725 (J4G43_054905) | 52217..53401 | + | 1185 | WP_208089687.1 | ThiF family adenylyltransferase | - |
| J4G43_RS54730 (J4G43_054910) | 53407..53817 | + | 411 | WP_060913255.1 | DUF6527 family protein | - |
| J4G43_RS54735 (J4G43_054915) | 54046..57063 | + | 3018 | WP_060913256.1 | DEAD/DEAH box helicase | - |
| J4G43_RS54740 (J4G43_054920) | 57215..57883 | + | 669 | WP_060913257.1 | DUF6088 family protein | - |
| J4G43_RS55570 | 57893..58282 | + | 390 | WP_256461583.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| J4G43_RS55575 | 58312..58938 | + | 627 | WP_256461584.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| J4G43_RS54750 (J4G43_054930) | 60279..61010 | + | 732 | WP_225006056.1 | putative transcriptional activator protein TraR | VF |
| J4G43_RS54755 (J4G43_054935) | 61088..61408 | - | 321 | WP_225006066.1 | transcriptional repressor TraM | - |
| J4G43_RS54760 (J4G43_054940) | 61998..62610 | - | 613 | Protein_64 | TraH family protein | - |
| J4G43_RS54765 (J4G43_054945) | 62622..63857 | - | 1236 | WP_256461585.1 | conjugal transfer protein TraB | - |
| J4G43_RS54770 (J4G43_054950) | 63778..64311 | - | 534 | WP_038945275.1 | conjugative transfer signal peptidase TraF | - |
| J4G43_RS54775 (J4G43_054955) | 64308..67616 | - | 3309 | WP_208089689.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| J4G43_RS54780 (J4G43_054960) | 67869..68129 | + | 261 | WP_208089639.1 | TraC family protein | - |
| J4G43_RS54785 (J4G43_054965) | 68134..68349 | + | 216 | WP_038380958.1 | type IV conjugative transfer system coupling protein TraD | - |
| J4G43_RS54790 (J4G43_054970) | 68336..70265 | + | 1930 | Protein_70 | Protein VirD4 | VF |
| J4G43_RS54795 (J4G43_054975) | 70495..70983 | - | 489 | WP_202801365.1 | hypothetical protein | - |
| J4G43_RS54800 (J4G43_054980) | 71393..71707 | + | 315 | WP_038945268.1 | co-chaperone GroES | - |
| J4G43_RS54805 (J4G43_054985) | 71808..73448 | + | 1641 | WP_208089690.1 | 60 kDa chaperonin 3 | VF |
| J4G43_RS54810 (J4G43_054990) | 73785..74891 | - | 1107 | WP_049807846.1 | hypothetical protein | - |
| J4G43_RS54815 (J4G43_054995) | 74912..75850 | - | 939 | WP_038944358.1 | S1/P1 nuclease | - |
| J4G43_RS54820 (J4G43_055000) | 75906..78005 | - | 2100 | WP_038380964.1 | DNA/RNA non-specific endonuclease | - |
| J4G43_RS54825 (J4G43_055005) | 78913..79257 | + | 345 | WP_038380973.1 | hypothetical protein | - |
| J4G43_RS54830 (J4G43_055010) | 79523..80341 | + | 819 | WP_063709315.1 | N-formylglutamate amidohydrolase | - |
| J4G43_RS54835 (J4G43_055015) | 80623..81102 | - | 480 | WP_225006068.1 | rRNA adenine N-6-methyltransferase family protein | - |
| J4G43_RS54840 (J4G43_055020) | 81099..81317 | - | 219 | WP_225006070.1 | hypothetical protein | - |
| J4G43_RS54845 (J4G43_055025) | 81316..82020 | + | 705 | WP_225006072.1 | sigma-70 family RNA polymerase sigma factor | - |
| J4G43_RS54850 (J4G43_055030) | 82020..82310 | + | 291 | WP_028152399.1 | hypothetical protein | - |
| J4G43_RS54855 (J4G43_055035) | 82516..82683 | - | 168 | WP_085965845.1 | hypothetical protein | - |
| J4G43_RS54860 (J4G43_055040) | 83216..83689 | + | 474 | WP_085965844.1 | GNAT family N-acetyltransferase | - |
| J4G43_RS54865 (J4G43_055045) | 84051..84308 | + | 258 | WP_038380975.1 | WGR domain-containing protein | - |
| J4G43_RS54870 (J4G43_055050) | 84419..84697 | + | 279 | WP_028152396.1 | HU family DNA-binding protein | - |
| J4G43_RS54875 (J4G43_055055) | 84744..84890 | - | 147 | WP_193375841.1 | hypothetical protein | - |
| J4G43_RS54880 (J4G43_055060) | 84954..85268 | - | 315 | WP_028152395.1 | DUF736 domain-containing protein | - |
| J4G43_RS54885 (J4G43_055065) | 86027..86947 | - | 921 | WP_028152394.1 | zincin-like metallopeptidase domain-containing protein | - |
| J4G43_RS54890 (J4G43_055070) | 87303..87890 | - | 588 | WP_028152392.1 | hypothetical protein | - |
| J4G43_RS54895 (J4G43_055075) | 88402..88800 | - | 399 | WP_225006075.1 | hypothetical protein | - |
| J4G43_RS54900 (J4G43_055080) | 88797..89219 | - | 423 | Protein_92 | hypothetical protein | - |
| J4G43_RS54905 (J4G43_055085) | 89506..90657 | - | 1152 | WP_208089700.1 | IS110 family transposase ISRel9 | Transposase |
| J4G43_RS54910 (J4G43_055090) | 90736..91206 | - | 471 | Protein_94 | hypothetical protein | - |
| J4G43_RS54915 (J4G43_055095) | 91334..93013 | - | 1680 | Protein_95 | ParB N-terminal domain-containing protein | - |
| J4G43_RS54920 (J4G43_055100) | 93321..98419 | - | 5099 | Protein_96 | DEAD/DEAH box helicase family protein | - |
| J4G43_RS54925 (J4G43_055105) | 98510..98782 | - | 273 | Protein_97 | DUF3085 domain-containing protein | - |
| J4G43_RS54930 (J4G43_055110) | 99244..100587 | + | 1344 | WP_208084195.1 | IS1380 family transposase ISBdi2 | Transposase |
| J4G43_RS54935 (J4G43_055115) | 100756..100878 | - | 123 | Protein_99 | DUF3085 domain-containing protein | - |
| J4G43_RS54940 (J4G43_055120) | 100890..101492 | - | 603 | WP_028152387.1 | DUF1419 domain-containing protein | - |
| J4G43_RS54945 (J4G43_055125) | 101728..102594 | - | 867 | WP_038944349.1 | DUF3991 and TOPRIM domain-containing protein | - |
| J4G43_RS54950 (J4G43_055130) | 102823..103008 | - | 186 | WP_028152386.1 | hypothetical protein | - |
| J4G43_RS54955 (J4G43_055135) | 104008..104715 | - | 708 | WP_038944348.1 | hypothetical protein | - |
| J4G43_RS54960 (J4G43_055140) | 105200..105865 | + | 666 | WP_028152384.1 | DUF6088 family protein | - |
| J4G43_RS54965 (J4G43_055145) | 105862..106905 | + | 1044 | WP_028152383.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| J4G43_RS54970 (J4G43_055150) | 106950..108050 | + | 1101 | WP_038380981.1 | hypothetical protein | - |
| J4G43_RS54975 (J4G43_055155) | 108591..109010 | - | 420 | WP_028152381.1 | hypothetical protein | - |
| J4G43_RS54980 (J4G43_055160) | 109492..110426 | - | 935 | Protein_108 | AAA family ATPase | - |
| J4G43_RS54985 (J4G43_055165) | 110836..111351 | + | 516 | Protein_109 | ATP-binding domain-containing protein | - |
| J4G43_RS54990 (J4G43_055170) | 111361..111738 | + | 378 | WP_018273921.1 | hypothetical protein | - |
| J4G43_RS54995 (J4G43_055175) | 111826..114528 | + | 2703 | WP_208089691.1 | DEAD/DEAH box helicase | - |
| J4G43_RS55000 (J4G43_055180) | 114529..115440 | + | 912 | WP_208089692.1 | SWIM zinc finger family protein | - |
| J4G43_RS55005 (J4G43_055185) | 115978..118239 | + | 2262 | WP_225006078.1 | 2OG-Fe(II) oxygenase | - |
| J4G43_RS55010 (J4G43_055190) | 118360..118989 | + | 630 | WP_225006081.1 | hypothetical protein | - |
| J4G43_RS55015 (J4G43_055195) | 119179..119985 | + | 807 | WP_208089695.1 | pyridoxal-phosphate dependent enzyme | - |
| J4G43_RS55020 (J4G43_055200) | 120137..121678 | + | 1542 | WP_060907903.1 | IS21 family transposase ISFK1 | Transposase |
| J4G43_RS55025 (J4G43_055205) | 121697..122458 | + | 762 | WP_011090937.1 | IS21 family transposase ISFK1 | Transposase |
| J4G43_RS55030 (J4G43_055210) | 122649..123089 | - | 441 | WP_162137028.1 | IS3 family transposase ISVpa4 | Transposase |
| J4G43_RS55035 (J4G43_055215) | 123183..123446 | + | 264 | Protein_119 | E3 ubiquitin-protein ligase ipaH3 | VF |
| J4G43_RS55040 (J4G43_055220) | 124880..125089 | + | 210 | WP_028153994.1 | cold-shock protein | - |
| J4G43_RS55045 (J4G43_055225) | 125508..125933 | + | 426 | WP_162136781.1 | Linear gramicidin synthase subunit D | VF |
| J4G43_RS55050 (J4G43_055235) | 126979..127473 | - | 495 | WP_028154654.1 | PilZ domain-containing protein | - |
| J4G43_RS55055 (J4G43_055240) | 127466..127897 | + | 432 | Protein_123 | IS256 family transposase ISNha10 | Transposase |
| J4G43_RS55060 (J4G43_055245) | 128504..129346 | + | 843 | WP_225006083.1 | hypothetical protein | - |
| J4G43_RS55065 (J4G43_055250) | 129291..130040 | - | 750 | WP_208089701.1 | IS6 family transposase ISBj7 | Transposase |
| J4G43_RS55070 (J4G43_055255) | 130292..132154 | + | 1863 | WP_028154325.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| J4G43_RS55075 (J4G43_055260) | 132306..132449 | + | 144 | Protein_127 | IS110 family transposase | - |
| J4G43_RS55080 (J4G43_055265) | 132521..132740 | - | 220 | Protein_128 | IS3 family transposase ISBj3 | Transposase |
| J4G43_RS55085 (J4G43_055270) | 133416..137741 | + | 4326 | WP_225006087.1 | Ulp1 family isopeptidase | - |
| J4G43_RS55090 (J4G43_055275) | 137900..138058 | - | 159 | Protein_130 | DNA methylase | - |
| J4G43_RS55095 (J4G43_055280) | 138107..138428 | + | 322 | Protein_131 | DDE-type integrase/transposase/recombinase | - |
| J4G43_RS55100 (J4G43_055285) | 138479..138646 | - | 168 | WP_225006090.1 | WGR domain-containing protein | - |
| J4G43_RS55105 (J4G43_055290) | 138706..140246 | + | 1541 | Protein_133 | IS21-like element ISFK1 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|