MGE detailed information
MGE type: Prophage MGE length: 132565 bp
Accession: NZ_CP085202 Location: 3552097..3684661 Organism: Shigella flexneri strain P099 Replicon: chromosome
Accession: NZ_CP085202 Location: 3552097..3684661 Organism: Shigella flexneri strain P099 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUX27_RS17985 (3548520) | 3548520..3549437 | + | 918 | WP_001199828.1 | 1-deoxyxylulose-5-phosphate synthase YajO | - |
| IUX27_RS17990 (3549548) | 3549548..3550066 | - | 519 | WP_000154147.1 | phosphatidylglycerophosphatase A | - |
| IUX27_RS17995 (3550044) | 3550044..3551021 | - | 978 | WP_000742108.1 | thiamine-phosphate kinase | - |
| IUX27_RS18000 (3551099) | 3551099..3551518 | - | 420 | WP_000801125.1 | transcription antitermination factor NusB | - |
| IUX27_RS18005 (3551538) | 3551538..3552008 | - | 471 | WP_001021161.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| IUX27_RS18010 (3552097) | 3552097..3553200 | - | 1104 | WP_001150448.1 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD | - |
| IUX27_RS18015 (3553204) | 3553204..3553653 | - | 450 | WP_000543539.1 | transcriptional regulator NrdR | - |
| IUX27_RS18020 (3553804) | 3553804..3554343 | + | 540 | WP_001382892.1 | DUF3251 domain-containing protein | - |
| IUX27_RS18025 (3554641) | 3554641..3555525 | + | 885 | WP_248501030.1 | nucleoside-specific channel-forming protein Tsx | - |
| IUX27_RS18030 (3555702) | 3555702..3556049 | - | 348 | WP_000974813.1 | HNH nuclease YajD | - |
| IUX27_RS18035 (3556178) | 3556178..3557149 | - | 972 | WP_000046642.1 | protein translocase subunit SecF | - |
| IUX27_RS18040 (3557160) | 3557160..3559007 | - | 1848 | WP_000934822.1 | protein translocase subunit SecD | - |
| IUX27_RS18045 (3559035) | 3559035..3559367 | - | 333 | WP_025237485.1 | preprotein translocase subunit YajC | - |
| IUX27_RS18050 (3559390) | 3559390..3560517 | - | 1128 | WP_000667315.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| IUX27_RS18055 (3560572) | 3560572..3561642 | - | 1071 | WP_001266503.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| IUX27_RS18060 (3561735) | 3561735..3562308 | + | 574 | Protein_3506 | ACP phosphodiesterase | - |
| IUX27_RS18065 (3562313) | 3562313..3564130 | - | 1818 | WP_000979361.1 | maltodextrin glucosidase | - |
| IUX27_RS18070 (3564286) | 3564286..3565659 | - | 1374 | WP_000444173.1 | proline-specific permease ProY | - |
| IUX27_RS18075 (3565735) | 3565735..3567054 | - | 1320 | WP_000149647.1 | branched-chain amino acid transporter carrier protein BrnQ | - |
| IUX27_RS18080 (3567461) | 3567461..3568756 | - | 1296 | WP_000893611.1 | hypothetical protein | VF |
| IUX27_RS18085 (3568814) | 3568814..3569503 | - | 690 | WP_000113938.1 | hypothetical protein | VF |
| IUX27_RS18090 (3569693) | 3569693..3570895 | + | 1203 | WP_001221306.1 | exonuclease subunit SbcD | - |
| IUX27_RS18095 (3570892) | 3570892..3574035 | + | 3144 | WP_000698943.1 | exonuclease subunit SbcC | - |
| IUX27_RS18100 (3574161) | 3574161..3575342 | + | 1182 | WP_005053102.1 | MFS transporter AraJ | - |
| IUX27_RS18105 (3575485) | 3575485..3576393 | - | 909 | WP_001219335.1 | fructokinase | - |
| IUX27_RS18110 (3576518) | 3576518..3577429 | + | 912 | WP_005053105.1 | recombination-associated protein RdgC | - |
| IUX27_RS18115 (3577507) | 3577507..3577962 | - | 456 | WP_000194195.1 | hypothetical protein | - |
| IUX27_RS18120 (3577959) | 3577959..3578294 | - | 336 | Protein_3518 | DUF2773 domain-containing protein | - |
| IUX27_RS18125 (3578449) | 3578449..3578733 | - | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| IUX27_RS18130 (3578805) | 3578805..3579482 | - | 678 | WP_001276420.1 | AroM family protein | - |
| IUX27_RS18135 (3579740) | 3579740..3579931 | - | 192 | WP_001142439.1 | protein YaiA | - |
| IUX27_RS18140 (3579981) | 3579981..3580505 | - | 525 | WP_000193385.1 | shikimate kinase AroL | - |
| IUX27_RS18145 (3580688) | 3580688..3581146 | - | 459 | WP_000158164.1 | YaiI/YqxD family protein | - |
| IUX27_RS18150 (3581266) | 3581266..3582075 | + | 810 | WP_001295331.1 | pyrroline-5-carboxylate reductase | - |
| IUX27_RS18155 (3582092) | 3582092..3583207 | - | 1116 | WP_005053118.1 | diguanylate cyclase AdrA | - |
| IUX27_RS18160 (3583358) | 3583358..3584567 | + | 1210 | Protein_3526 | IS3 family transposase IS629 | Transposase |
| IUX27_RS18165 (3584551) | 3584551..3585749 | + | 1199 | WP_094092420.1 | IS3 family transposase ISSd1 | Transposase |
| IUX27_RS18170 (3585782) | 3585782..3586240 | + | 459 | Protein_3528 | site-specific integrase | - |
| IUX27_RS18180 (3586445) | 3586445..3587698 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| IUX27_RS18185 (3587710) | 3587710..3588813 | - | 1104 | WP_141106146.1 | glutamate 5-kinase | - |
| IUX27_RS18195 (3589877) | 3589877..3590932 | + | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| IUX27_RS18200 (3590971) | 3590971..3591372 | - | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| - (3592090) | 3592090..3592170 | - | 81 | NuclAT_7 | - | - |
| - (3592090) | 3592090..3592170 | - | 81 | NuclAT_7 | - | - |
| - (3592090) | 3592090..3592170 | - | 81 | NuclAT_7 | - | - |
| - (3592090) | 3592090..3592170 | - | 81 | NuclAT_7 | - | - |
| IUX27_RS18205 (3591430) | 3591430..3592674 | - | 1245 | WP_000189558.1 | esterase FrsA | - |
| IUX27_RS18210 (3592766) | 3592766..3593224 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| IUX27_RS18215 (3593486) | 3593486..3594943 | + | 1458 | WP_001293030.1 | cytosol nonspecific dipeptidase | - |
| IUX27_RS18220 (3595000) | 3595000..3595560 | - | 561 | Protein_3537 | peptide chain release factor H | - |
| IUX27_RS18225 (3595676) | 3595676..3596719 | - | 1044 | WP_005053205.1 | RNA ligase RtcB family protein | - |
| IUX27_RS18230 (3596965) | 3596965..3597417 | - | 453 | WP_001059860.1 | GNAT family N-acetyltransferase | - |
| IUX27_RS18235 (3597427) | 3597427..3597825 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| IUX27_RS18240 (3597828) | 3597828..3598121 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| IUX27_RS18245 (3598173) | 3598173..3599228 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| IUX27_RS18250 (3599299) | 3599299..3600084 | - | 786 | WP_000207560.1 | hypothetical protein | VF |
| IUX27_RS18255 (3600056) | 3600056..3601768 | + | 1713 | Protein_3544 | hypothetical protein | VF |
| IUX27_RS18260 (3601985) | 3601985..3602482 | - | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| IUX27_RS18265 (3602658) | 3602658..3603179 | - | 522 | Protein_3546 | hypothetical protein | VF |
| IUX27_RS18270 (3603563) | 3603563..3604303 | + | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| IUX27_RS18275 (3604274) | 3604274..3605041 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| IUX27_RS18280 (3605247) | 3605247..3605825 | - | 579 | WP_000284050.1 | hypothetical protein | VF |
| IUX27_RS18285 (3606065) | 3606065..3608509 | + | 2445 | WP_000973114.1 | hypothetical protein | VF |
| IUX27_RS18290 (3608552) | 3608552..3608998 | - | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| IUX27_RS18295 (3609179) | 3609179..3609949 | + | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| IUX27_RS18300 (3610059) | 3610059..3610291 | + | 233 | Protein_3553 | SymE family type I addiction module toxin | - |
| IUX27_RS18305 (3610357) | 3610357..3610677 | - | 321 | WP_000343515.1 | hypothetical protein | - |
| IUX27_RS18310 (3610695) | 3610695..3610898 | - | 204 | WP_128567422.1 | hypothetical protein | - |
| IUX27_RS18315 (3610998) | 3610998..3611987 | - | 990 | WP_005053234.1 | hypothetical protein | VF |
| IUX27_RS18320 (3611984) | 3611984..3614272 | - | 2289 | WP_000568701.1 | DUF6531 domain-containing protein | - |
| IUX27_RS18325 (3614269) | 3614269..3614676 | - | 408 | WP_005053237.1 | PAAR domain-containing protein | - |
| IUX27_RS18330 (3614698) | 3614698..3614910 | - | 213 | WP_072075142.1 | DcrB-related protein | - |
| IUX27_RS18335 (3614943) | 3614943..3615143 | - | 201 | WP_011110542.1 | DcrB-related protein | - |
| IUX27_RS18340 (3615166) | 3615166..3617379 | - | 2214 | WP_248501033.1 | hypothetical protein | VF |
| IUX27_RS18345 (3617404) | 3617404..3617790 | - | 387 | WP_000667623.1 | hypothetical protein | - |
| IUX27_RS18350 (3617787) | 3617787..3618272 | - | 486 | WP_001201712.1 | hypothetical protein | - |
| IUX27_RS18360 (3619573) | 3619573..3620292 | + | 720 | WP_001102097.1 | (Fe-S)-binding protein | - |
| IUX27_RS18365 (3620303) | 3620303..3621730 | + | 1428 | WP_000023933.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| IUX27_RS18370 (3621723) | 3621723..3622418 | + | 696 | WP_000370403.1 | lactate utilization protein C | - |
| IUX27_RS18375 (3622661) | 3622661..3623329 | - | 669 | WP_000003122.1 | protein YkgH | - |
| IUX27_RS18380 (3623474) | 3623474..3624171 | + | 698 | WP_232111819.1 | IS1 family transposase IS1X2 | Transposase |
| IUX27_RS18385 (3624187) | 3624187..3624432 | + | 246 | Protein_3570 | hypothetical protein | - |
| IUX27_RS18390 (3624699) | 3624699..3625625 | + | 927 | WP_045177322.1 | taurine ABC transporter substrate-binding protein | - |
| IUX27_RS18395 (3625638) | 3625638..3626405 | + | 768 | WP_000939367.1 | hypothetical protein | VF |
| IUX27_RS18400 (3626402) | 3626402..3627229 | + | 828 | WP_000114607.1 | taurine ABC transporter permease TauC | - |
| IUX27_RS18405 (3627226) | 3627226..3628077 | + | 852 | WP_000004031.1 | taurine dioxygenase | - |
| IUX27_RS18410 (3628183) | 3628183..3629157 | - | 975 | WP_001295337.1 | porphobilinogen synthase | - |
| IUX27_RS18415 (3629681) | 3629681..3630049 | + | 369 | Protein_3576 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| IUX27_RS18425 (3630918) | 3630918..3632146 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| IUX27_RS18430 (3632154) | 3632154..3632687 | + | 534 | Protein_3579 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| IUX27_RS18435 (3632751) | 3632751..3632858 | + | 108 | Protein_3580 | IS3 family transposase ISEhe3 | Transposase |
| IUX27_RS18440 (3632923) | 3632923..3634079 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| IUX27_RS18445 (3634120) | 3634120..3635165 | + | 1046 | Protein_3582 | IS3 family transposase ISEhe3 | Transposase |
| IUX27_RS18450 (3635185) | 3635185..3635712 | + | 528 | Protein_3583 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| IUX27_RS18455 (3635800) | 3635800..3636303 | + | 504 | WP_000953938.1 | helix-turn-helix domain-containing protein | - |
| IUX27_RS18460 (3636304) | 3636304..3637461 | - | 1158 | WP_000830735.1 | D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH | - |
| IUX27_RS18465 (3637813) | 3637813..3639033 | + | 1221 | WP_001342332.1 | peptide antibiotic transporter SbmA | - |
| IUX27_RS18470 (3639046) | 3639046..3640140 | + | 1095 | WP_000092054.1 | surface-exposed outer membrane lipoprotein YaiW | - |
| IUX27_RS18475 (3640199) | 3640199..3640507 | - | 309 | WP_000763148.1 | YaiY family protein | - |
| IUX27_RS18480 (3640767) | 3640767..3640979 | + | 213 | WP_001599861.1 | DUF2754 domain-containing protein | - |
| IUX27_RS18485 (3641003) | 3641003..3642097 | - | 1095 | WP_000413677.1 | D-alanine--D-alanine ligase | - |
| IUX27_RS18490 (3642175) | 3642175..3642378 | + | 204 | WP_023517632.1 | hypothetical protein | - |
| IUX27_RS18495 (3642560) | 3642560..3642820 | + | 261 | WP_000792969.1 | anti-adapter protein IraP | - |
| IUX27_RS18500 (3642921) | 3642921..3644336 | + | 1416 | WP_005053287.1 | alkaline phosphatase | - |
| IUX27_RS18505 (3644455) | 3644455..3644775 | + | 321 | WP_005053289.1 | phosphate starvation-inducible protein PsiF | - |
| IUX27_RS18510 (3644826) | 3644826..3646035 | - | 1210 | Protein_3595 | IS3 family transposase IS629 | Transposase |
| IUX27_RS18515 (3646161) | 3646161..3647891 | - | 1731 | WP_005053293.1 | lytic transglycosylase domain-containing protein | - |
| IUX27_RS18520 (3647892) | 3647892..3649223 | - | 1332 | WP_000246949.1 | phage DNA ejection protein | - |
| IUX27_RS18525 (3649233) | 3649233..3649925 | - | 693 | WP_000964877.1 | DNA transfer protein | - |
| IUX27_RS18530 (3649928) | 3649928..3650383 | - | 456 | WP_000627639.1 | DUF2824 family protein | - |
| IUX27_RS18535 (3650383) | 3650383..3651231 | - | 849 | WP_000785540.1 | tail needle knob protein | - |
| IUX27_RS18540 (3651231) | 3651231..3652649 | - | 1419 | WP_001122382.1 | packaged DNA stabilization protein gp10 | - |
| IUX27_RS18545 (3652649) | 3652649..3653149 | - | 501 | WP_001054834.1 | packaged DNA stabilization gp4 family protein | - |
| IUX27_RS18550 (3653127) | 3653127..3653357 | - | 231 | WP_005053303.1 | hypothetical protein | - |
| IUX27_RS18555 (3653402) | 3653402..3654697 | - | 1296 | WP_001196950.1 | P22 phage major capsid protein family protein | - |
| IUX27_RS18560 (3654697) | 3654697..3655608 | - | 912 | WP_000373012.1 | scaffold protein | - |
| IUX27_RS18565 (3655622) | 3655622..3657787 | - | 2166 | WP_000752837.1 | portal protein | - |
| IUX27_RS18570 (3657788) | 3657788..3658831 | - | 1044 | Protein_3607 | terminase family protein | - |
| IUX27_RS18580 (3660083) | 3660083..3660370 | + | 288 | WP_000343116.1 | hypothetical protein | - |
| IUX27_RS18590 (3661753) | 3661753..3662052 | + | 300 | WP_000804009.1 | FHA domain-containing protein | - |
| IUX27_RS18595 (3662104) | 3662104..3662667 | + | 564 | WP_232046051.1 | type VI secretion system-associated protein TagK | - |
| IUX27_RS18600 (3662654) | 3662654..3663484 | + | 831 | Protein_3613 | hypothetical protein | VF |
| IUX27_RS18605 (3663481) | 3663481..3663975 | + | 495 | WP_001276640.1 | hypothetical protein | VF |
| IUX27_RS18610 (3663991) | 3663991..3665874 | + | 1884 | WP_000371478.1 | type VI secretion system baseplate subunit TssF | - |
| IUX27_RS18615 (3665871) | 3665871..3666430 | + | 560 | Protein_3616 | hypothetical protein | VF |
| IUX27_RS18620 (3666444) | 3666444..3667490 | + | 1047 | WP_000402248.1 | hypothetical protein | VF |
| IUX27_RS18630 (3667830) | 3667830..3668561 | - | 732 | WP_104274844.1 | DNA polymerase III subunit epsilon | - |
| IUX27_RS18635 (3668626) | 3668626..3669093 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| IUX27_RS18640 (3669090) | 3669090..3669812 | - | 723 | WP_005060310.1 | class I SAM-dependent methyltransferase | - |
| IUX27_RS18645 (3669846) | 3669846..3670601 | + | 756 | WP_001052754.1 | hydroxyacylglutathione hydrolase | - |
| IUX27_RS18650 (3670673) | 3670673..3672019 | + | 1347 | WP_000644679.1 | hypothetical protein | VF |
| IUX27_RS18655 (3672067) | 3672067..3672837 | - | 771 | WP_000211683.1 | class I SAM-dependent methyltransferase | - |
| IUX27_RS18660 (3672915) | 3672915..3673715 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| IUX27_RS18665 (3673956) | 3673956..3674870 | + | 915 | WP_000648578.1 | hypothetical protein | VF |
| IUX27_RS18670 (3674920) | 3674920..3676266 | + | 1347 | WP_005086990.1 | IS4 family transposase IS4 | Transposase |
| IUX27_RS18675 (3676305) | 3676305..3677108 | - | 804 | WP_000997046.1 | 2,5-didehydrogluconate reductase DkgB | - |
| IUX27_RS18710 (3682867) | 3682867..3683442 | - | 576 | WP_001140187.1 | hypothetical protein | VF |
| IUX27_RS18715 (3683630) | 3683630..3684661 | + | 1032 | WP_000593997.1 | hypothetical protein | VF |
| IUX27_RS18720 (3684654) | 3684654..3685307 | + | 654 | WP_001294596.1 | methionine ABC transporter permease MetI | - |
| IUX27_RS18725 (3685347) | 3685347..3686162 | + | 816 | WP_000874224.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| IUX27_RS18730 (3686280) | 3686280..3686684 | + | 405 | WP_001202325.1 | Rcs stress response system protein RcsF | - |
| IUX27_RS18735 (3686681) | 3686681..3687388 | + | 708 | WP_000094030.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| IUX27_RS18740 (3687499) | 3687499..3689217 | + | 1719 | WP_001260712.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|