MGE detailed information
MGE type: Genomic_island MGE length: 9049 bp
Accession: NZ_CP084899 Location: 4582721..4591769 Organism: Escherichia coli strain W3110-P Replicon: chromosome
Accession: NZ_CP084899 Location: 4582721..4591769 Organism: Escherichia coli strain W3110-P Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LHV60_RS22260 (4579305) | 4579305..4580225 | + | 921 | Protein_4334 | Rpn family recombination-promoting nuclease/putative transposase | - |
| LHV60_RS22265 (4580469) | 4580469..4581881 | - | 1413 | WP_000199300.1 | PLP-dependent aminotransferase family protein | - |
| LHV60_RS22270 (4582058) | 4582058..4582222 | + | 165 | WP_000394280.1 | DUF1127 domain-containing protein | - |
| LHV60_RS22275 (4582721) | 4582721..4584229 | + | 1509 | Protein_4337 | protein YjiT | - |
| LHV60_RS22280 (4584226) | 4584226..4587162 | + | 2937 | Protein_4338 | hypothetical protein | - |
| LHV60_RS22285 (4587219) | 4587219..4588265 | - | 1047 | WP_000437621.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| LHV60_RS22290 (4588265) | 4588265..4589644 | - | 1380 | WP_000443951.1 | 5-methylcytosine-specific restriction endonuclease subunit McrB | - |
| LHV60_RS22295 (4589806) | 4589806..4590147 | - | 342 | WP_000132601.1 | endoribonuclease SymE | Toxin Detail |
| - (4590142) | 4590142..4590218 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4590142) | 4590142..4590218 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4590142) | 4590142..4590218 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4590142) | 4590142..4590218 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4590142) | 4590142..4590218 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - (4590142) | 4590142..4590218 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - (4590142) | 4590142..4590218 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - (4590142) | 4590142..4590218 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| LHV60_RS22300 (4590375) | 4590375..4591769 | - | 1395 | WP_001272447.1 | type I restriction-modification system specificity subunit | - |
| LHV60_RS22305 (4591766) | 4591766..4593355 | - | 1590 | WP_001063204.1 | type I restriction-modification system methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20090 | HG738867 | 4458009..4467057 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6352 | NC_000913 | 4572414..4581462 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21461 | NC_007779 | 4577094..4586142 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA6351 | NC_012759 | 4508921..4517969 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27427 | NC_017638 | 4552192..4561240 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48706 | NZ_CP009273 | 4562231..4571279 | 0 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90501 | NZ_CP025520 | 3428612..3437660 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285035 | NZ_HG738867 | 4458009..4467057 | 0 |