MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 48499 bp
Accession: NZ_CP084740 Location: 295273..343771 Organism: Dickeya zeae strain A586-S18-A17 Replicon: chromosome
Accession: NZ_CP084740 Location: 295273..343771 Organism: Dickeya zeae strain A586-S18-A17 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LHK94_RS01340 (LHK94_01345) | 290473..291027 | + | 555 | WP_226510892.1 | flavodoxin family protein | - |
| LHK94_RS01345 (LHK94_01350) | 291124..293298 | - | 2175 | WP_226510893.1 | discoidin domain-containing protein | - |
| LHK94_RS01350 (LHK94_01355) | 293392..293739 | - | 348 | WP_226510894.1 | hypothetical protein | - |
| LHK94_RS01360 (LHK94_01365) | 294312..295088 | + | 777 | WP_226510895.1 | DgsA anti-repressor MtfA | - |
| LHK94_RS01370 (LHK94_01375) | 295450..296733 | + | 1284 | WP_226510896.1 | Prophage integrase IntS ; Integrase | Integrase |
| LHK94_RS01375 (LHK94_01380) | 296888..297199 | - | 312 | WP_226052021.1 | DUF736 domain-containing protein | - |
| LHK94_RS01380 (LHK94_01385) | 298195..299121 | + | 927 | WP_226510897.1 | hypothetical protein | - |
| LHK94_RS01385 (LHK94_01390) | 299371..299721 | - | 351 | WP_226510898.1 | hypothetical protein | - |
| LHK94_RS01390 (LHK94_01395) | 299731..303993 | - | 4263 | WP_226510899.1 | RHS repeat-associated core domain-containing protein | - |
| LHK94_RS01395 (LHK94_01400) | 304005..304412 | - | 408 | WP_226510900.1 | DUF1795 domain-containing protein | - |
| LHK94_RS01400 (LHK94_01405) | 304426..306279 | - | 1854 | WP_226510901.1 | Actin cross-linking toxin VgrG1 | VF |
| LHK94_RS01405 (LHK94_01410) | 306393..306911 | - | 519 | WP_012768188.1 | Major exported protein | VF |
| LHK94_RS01410 (LHK94_01415) | 307616..307885 | - | 270 | WP_012884169.1 | helix-turn-helix transcriptional regulator | - |
| LHK94_RS01415 (LHK94_01420) | 308019..308297 | + | 279 | WP_226510902.1 | HTH-type transcriptional regulator Xre | VF |
| LHK94_RS01420 (LHK94_01425) | 308411..308668 | + | 258 | WP_016940998.1 | helix-turn-helix transcriptional regulator | - |
| LHK94_RS01425 (LHK94_01430) | 309113..309688 | + | 576 | WP_226510903.1 | DUF2857 domain-containing protein | - |
| LHK94_RS01430 (LHK94_01435) | 309678..309887 | + | 210 | WP_226510904.1 | TraR/DksA family transcriptional regulator | - |
| LHK94_RS01435 (LHK94_01440) | 310545..311051 | + | 507 | WP_226511613.1 | hypothetical protein | - |
| LHK94_RS01440 (LHK94_01445) | 311054..311884 | + | 831 | WP_226510905.1 | ATP F0F1 synthase synthase | - |
| LHK94_RS01445 (LHK94_01450) | 312238..312426 | - | 189 | Protein_284 | IS3 family transposase ISPeat2 | Transposase |
| LHK94_RS01450 (LHK94_01455) | 312716..314299 | - | 1584 | WP_226510906.1 | hypothetical protein | - |
| LHK94_RS01455 (LHK94_01460) | 314729..315917 | - | 1189 | Protein_286 | IS110 family transposase | - |
| LHK94_RS01460 (LHK94_01465) | 316522..316758 | + | 237 | WP_226510907.1 | hypothetical protein | - |
| LHK94_RS01465 (LHK94_01470) | 316828..317481 | + | 654 | WP_226511614.1 | Type IV secretion system protein virB1 | VF |
| LHK94_RS01470 (LHK94_01475) | 317494..317769 | + | 276 | WP_012769221.1 | hypothetical protein | VF |
| LHK94_RS01475 (LHK94_01480) | 317780..320527 | + | 2748 | WP_226510908.1 | Type IV secretion system protein virB4 | VF |
| LHK94_RS01480 (LHK94_01485) | 320552..321271 | + | 720 | WP_226510909.1 | type IV secretion system protein | - |
| LHK94_RS01485 (LHK94_01490) | 321282..321557 | + | 276 | WP_226510910.1 | EexN family lipoprotein | - |
| LHK94_RS01490 (LHK94_01495) | 321633..322661 | + | 1029 | WP_226510911.1 | type IV secretion system protein | - |
| LHK94_RS01495 (LHK94_01500) | 322883..323566 | + | 684 | WP_226510912.1 | Type IV secretion system protein PtlE | VF |
| LHK94_RS01500 (LHK94_01505) | 323563..324456 | + | 894 | WP_226510913.1 | P-type conjugative transfer protein VirB9 | - |
| LHK94_RS01505 (LHK94_01510) | 324453..325661 | + | 1209 | WP_226510914.1 | Type IV secretion system protein virB10 | VF |
| LHK94_RS01510 (LHK94_01515) | 325651..326667 | + | 1017 | WP_226510915.1 | Type IV secretion system protein VirB11 | VF |
| LHK94_RS01515 (LHK94_01520) | 326708..327010 | + | 303 | WP_226510916.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LHK94_RS01520 (LHK94_01525) | 327692..329455 | + | 1764 | WP_226510917.1 | hypothetical protein | VF |
| LHK94_RS01525 (LHK94_01530) | 329464..330210 | + | 747 | WP_226510918.1 | MobC family replication-relaxation protein | - |
| LHK94_RS01535 (LHK94_01540) | 332057..333778 | + | 1722 | WP_226510919.1 | hypothetical protein | - |
| LHK94_RS01540 (LHK94_01545) | 333935..334300 | - | 366 | Protein_303 | IS110 family transposase ISCps4 | Transposase |
| LHK94_RS01545 (LHK94_01550) | 334487..335386 | + | 900 | WP_226510920.1 | AraC family transcriptional regulator | - |
| LHK94_RS01550 (LHK94_01555) | 335463..335587 | + | 125 | Protein_305 | mobilization protein mobC | - |
| LHK94_RS01555 (LHK94_01560) | 335584..335898 | - | 315 | WP_226510921.1 | CcdB family protein | Toxin Detail |
| LHK94_RS01560 (LHK94_01565) | 335901..336137 | - | 237 | WP_110372302.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| LHK94_RS01565 (LHK94_01570) | 336458..337402 | - | 945 | WP_226510922.1 | zincin-like metallopeptidase domain-containing protein | - |
| LHK94_RS01570 (LHK94_01575) | 337812..338705 | + | 894 | WP_226510923.1 | site-specific DNA-methyltransferase | - |
| LHK94_RS01575 (LHK94_01580) | 338691..339449 | - | 759 | WP_226510924.1 | hypothetical protein | - |
| LHK94_RS01580 (LHK94_01585) | 339463..339711 | - | 249 | WP_226510925.1 | helix-turn-helix transcriptional regulator | - |
| LHK94_RS01585 (LHK94_01590) | 339904..340050 | + | 147 | Protein_312 | IS21 family transposase | - |
| LHK94_RS01590 (LHK94_01595) | 340236..341222 | + | 987 | Protein_313 | IS3 family transposase | - |
| LHK94_RS01595 (LHK94_01600) | 341402..342529 | - | 1128 | WP_226510926.1 | DUF3800 domain-containing protein | - |
| LHK94_RS01600 (LHK94_01605) | 342700..343544 | - | 845 | Protein_315 | IS5 family transposase | - |
| LHK94_RS01605 (LHK94_01610) | 343630..343824 | + | 195 | WP_226511615.1 | hypothetical protein | - |
| LHK94_RS01610 (LHK94_01615) | 343923..344240 | + | 318 | WP_226510927.1 | amidase family protein | - |
| LHK94_RS01615 (LHK94_01620) | 344389..345771 | - | 1383 | WP_012885167.1 | APC family permease | - |
| LHK94_RS01620 (LHK94_01625) | 345916..346749 | - | 834 | WP_226510928.1 | helix-turn-helix domain-containing protein | - |
| LHK94_RS01625 (LHK94_01630) | 346928..348067 | + | 1140 | WP_226510929.1 | tyramine oxidase subunit B | - |
| LHK94_RS01630 (LHK94_01635) | 348083..348505 | + | 423 | WP_226510930.1 | RidA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|