MGE detailed information
MGE type: Genomic_island MGE length: 42845 bp
Accession: NZ_CP081008 Location: 3534290..3577134 Organism: Escherichia coli strain XL10-gold-ultracompetent Replicon: chromosome
Accession: NZ_CP081008 Location: 3534290..3577134 Organism: Escherichia coli strain XL10-gold-ultracompetent Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3831_RS16975 (3530874) | 3530874..3531794 | + | 921 | Protein_3346 | Rpn family recombination-promoting nuclease/putative transposase | - |
| K3831_RS16980 (3532038) | 3532038..3533450 | - | 1413 | WP_000199300.1 | PLP-dependent aminotransferase family protein | - |
| K3831_RS16985 (3533627) | 3533627..3533791 | + | 165 | WP_000394280.1 | DUF1127 domain-containing protein | - |
| K3831_RS16990 (3534290) | 3534290..3535798 | + | 1509 | Protein_3349 | protein YjiT | - |
| K3831_RS16995 (3535795) | 3535795..3538731 | + | 2937 | Protein_3350 | hypothetical protein | - |
| K3831_RS17000 (3538788) | 3538788..3539834 | - | 1047 | WP_000437621.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| K3831_RS17005 (3539834) | 3539834..3540607 | - | 774 | Protein_3352 | 5-methylcytosine-specific restriction endonuclease subunit McrB | - |
| K3831_RS17010 (3540725) | 3540725..3541117 | - | 393 | Protein_3353 | fertility inhibition protein FinO | - |
| K3831_RS17015 (3541172) | 3541172..3541918 | - | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| K3831_RS17020 (3541938) | 3541938..3547208 | - | 5271 | WP_000987005.1 | conjugative transfer relaxase/helicase TraI | - |
| K3831_RS17025 (3547290) | 3547290..3547517 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K3831_RS17030 (3547517) | 3547517..3547915 | + | 399 | WP_000911324.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| K3831_RS17035 (3547924) | 3547924..3550077 | - | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| K3831_RS17040 (3550330) | 3550330..3551061 | - | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| K3831_RS17045 (3551086) | 3551086..3551607 | - | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| K3831_RS17050 (3551640) | 3551640..3554456 | - | 2817 | WP_001007055.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| K3831_RS17055 (3554453) | 3554453..3555826 | - | 1374 | WP_021553026.1 | conjugal transfer pilus assembly protein TraH | - |
| K3831_RS17060 (3555826) | 3555826..3556206 | - | 381 | WP_001366201.1 | F-type conjugal transfer protein TrbF | - |
| K3831_RS17065 (3556193) | 3556193..3556534 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| K3831_RS17070 (3556464) | 3556464..3557009 | - | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| K3831_RS17075 (3556996) | 3556996..3557280 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| K3831_RS17080 (3557361) | 3557361..3557675 | + | 315 | WP_000415566.1 | protein ArtA | - |
| K3831_RS17085 (3557677) | 3557677..3558024 | - | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| K3831_RS17090 (3558040) | 3558040..3558783 | - | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| K3831_RS17095 (3558776) | 3558776..3559033 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| K3831_RS17100 (3559060) | 3559060..3560868 | - | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| K3831_RS17105 (3560865) | 3560865..3561503 | - | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| K3831_RS17110 (3561512) | 3561512..3562504 | - | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| K3831_RS17115 (3562501) | 3562501..3563133 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| K3831_RS17120 (3563130) | 3563130..3563516 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| K3831_RS17125 (3563513) | 3563513..3566140 | - | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| K3831_RS17130 (3566300) | 3566300..3566521 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| K3831_RS17135 (3566656) | 3566656..3567171 | - | 516 | WP_010892541.1 | type IV conjugative transfer system lipoprotein TraV | - |
| K3831_RS17140 (3567168) | 3567168..3567419 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| K3831_RS17145 (3567431) | 3567431..3567628 | - | 198 | WP_001443030.1 | conjugal transfer protein TrbD | - |
| K3831_RS17150 (3567615) | 3567615..3568205 | - | 591 | WP_000002792.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| K3831_RS17155 (3568195) | 3568195..3569622 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| K3831_RS17160 (3569622) | 3569622..3570350 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| K3831_RS17165 (3570337) | 3570337..3570903 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| K3831_RS17170 (3570925) | 3570925..3571236 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| K3831_RS17175 (3571251) | 3571251..3571616 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| K3831_RS17180 (3571649) | 3571649..3572050 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| K3831_RS17185 (3572143) | 3572143..3572832 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| K3831_RS17190 (3573019) | 3573019..3573402 | - | 384 | WP_001151527.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| K3831_RS17195 (3573735) | 3573735..3574325 | + | 591 | WP_170919186.1 | hypothetical protein | VF |
| K3831_RS17200 (3574621) | 3574621..3575442 | - | 822 | WP_001234417.1 | DUF932 domain-containing protein | - |
| K3831_RS17205 (3575561) | 3575561..3575848 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| K3831_RS17210 (3575873) | 3575873..3576079 | - | 207 | WP_000547965.1 | hypothetical protein | - |
| K3831_RS23165 (3576149) | 3576149..3576232 | + | 84 | Protein_3394 | hypothetical protein | - |
| K3831_RS17215 (3576495) | 3576495..3576650 | + | 156 | WP_001307436.1 | protein YrhD | - |
| K3831_RS17220 (3576850) | 3576850..3577134 | + | 285 | WP_000634159.1 | YrhB family protein | - |
| K3831_RS17225 (3577172) | 3577172..3578914 | - | 1743 | WP_000595085.1 | gamma-glutamyltransferase | - |
| K3831_RS17230 (3579034) | 3579034..3579474 | + | 441 | WP_000825996.1 | DUF2756 family protein | - |
| K3831_RS17235 (3579461) | 3579461..3580204 | - | 744 | WP_000073622.1 | glycerophosphodiester phosphodiesterase | - |
| K3831_RS17240 (3580201) | 3580201..3581271 | - | 1071 | WP_000907807.1 | sn-glycerol 3-phosphate ABC transporter ATP binding protein UgpC | - |
| K3831_RS17245 (3581273) | 3581273..3582118 | - | 846 | WP_000572177.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|