MGE detailed information
MGE type: Genomic_island MGE length: 19634 bp
Accession: NZ_CP075113 Location: 4176557..4196190 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CFSAN059898 Replicon: chromosome
Accession: NZ_CP075113 Location: 4176557..4196190 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CFSAN059898 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO47_RS20400 (4171835) | 4171835..4172365 | - | 531 | WP_000907670.1 | Hcp family type VI secretion system effector | - |
| CCO47_RS20405 (4173083) | 4173083..4174096 | + | 1014 | WP_001094620.1 | tryptophan--tRNA ligase | - |
| CCO47_RS20410 (4174097) | 4174097..4174870 | - | 774 | WP_000841654.1 | Uxu operon transcriptional regulator | - |
| CCO47_RS20415 (4175220) | 4175220..4175894 | + | 675 | WP_000588701.1 | dienelactone hydrolase family protein | - |
| CCO47_RS20420 (4175891) | 4175891..4176352 | - | 462 | WP_001642121.1 | DUF302 domain-containing protein | - |
| CCO47_RS20425 (4176557) | 4176557..4177468 | - | 912 | WP_000556778.1 | hypothetical protein | - |
| CCO47_RS20430 (4177822) | 4177822..4178430 | - | 609 | WP_000864861.1 | DUF1062 domain-containing protein | - |
| CCO47_RS20435 (4178917) | 4178917..4179174 | + | 258 | WP_001054381.1 | YjhX family toxin | - |
| CCO47_RS20440 (4179179) | 4179179..4180810 | + | 1632 | WP_077906692.1 | class I SAM-dependent methyltransferase | - |
| CCO47_RS20445 (4181370) | 4181370..4182074 | + | 705 | WP_000532941.1 | hypothetical protein | VF |
| CCO47_RS20450 (4182554) | 4182554..4183429 | - | 876 | Protein_4028 | HNH endonuclease | - |
| CCO47_RS20455 (4183685) | 4183685..4184795 | - | 1111 | Protein_4029 | IS3 family transposase | - |
| CCO47_RS20460 (4185058) | 4185058..4185904 | - | 847 | Protein_4030 | YjiK family protein | - |
| CCO47_RS20465 (4185955) | 4185955..4186101 | - | 147 | WP_001141717.1 | hypothetical protein | - |
| CCO47_RS20470 (4186091) | 4186091..4186744 | - | 654 | WP_000178593.1 | DsbA family protein | - |
| CCO47_RS20475 (4186989) | 4186989..4187339 | - | 351 | WP_000135401.1 | hypothetical protein | VF |
| CCO47_RS20480 (4187324) | 4187324..4187533 | - | 210 | WP_000504711.1 | hypothetical protein | VF |
| CCO47_RS20485 (4188110) | 4188110..4188925 | + | 816 | WP_000914538.1 | AraC family transcriptional regulator | - |
| CCO47_RS20490 (4188959) | 4188959..4189405 | - | 447 | WP_001077813.1 | hypothetical protein | VF |
| CCO47_RS20495 (4189402) | 4189402..4191840 | - | 2439 | WP_094912373.1 | hypothetical protein | VF |
| CCO47_RS20500 (4191857) | 4191857..4192597 | - | 741 | WP_001575372.1 | hypothetical protein | VF |
| CCO47_RS20505 (4192719) | 4192719..4193249 | - | 531 | WP_000909460.1 | hypothetical protein | VF |
| CCO47_RS20510 (4193572) | 4193572..4194705 | + | 1134 | Protein_4040 | IS3 family transposase | - |
| CCO47_RS20515 (4194737) | 4194737..4194877 | - | 141 | Protein_4041 | Arm DNA-binding domain-containing protein | - |
| CCO47_RS20520 (4195283) | 4195283..4195591 | - | 309 | WP_001199743.1 | CcdB family protein | Toxin Detail |
| CCO47_RS20525 (4195594) | 4195594..4195833 | - | 240 | WP_001118105.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| CCO47_RS20530 (4195942) | 4195942..4196190 | - | 249 | WP_000168389.1 | ribbon-helix-helix domain-containing protein | - |
| CCO47_RS20535 (4196381) | 4196381..4196812 | - | 432 | Protein_4045 | helix-turn-helix domain-containing protein | - |
| CCO47_RS20545 (4197569) | 4197569..4198588 | + | 1020 | WP_000152558.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| CCO47_RS20550 (4198616) | 4198616..4199146 | - | 531 | WP_000896758.1 | gluconokinase | - |
| CCO47_RS20555 (4199363) | 4199363..4200394 | + | 1032 | WP_000453348.1 | L-idonate 5-dehydrogenase | - |
| CCO47_RS20560 (4200419) | 4200419..4201183 | + | 765 | WP_001061034.1 | gluconate 5-dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|