MGE detailed information
MGE type: Conjugative plasmid MGE length: 93933 bp
Accession: NZ_CP074099 Location: 1..93933 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain C_cip Replicon: plasmid pSLT
Accession: NZ_CP074099 Location: 1..93933 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain C_cip Replicon: plasmid pSLT
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFV01_RS23460 (KFV01_23465) | 94..378 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| KFV01_RS23465 (KFV01_23470) | 391..546 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| KFV01_RS23470 (KFV01_23475) | 668..1223 | + | 556 | Protein_2 | Phospholipase D | VF |
| KFV01_RS23475 (KFV01_23480) | 1334..1600 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| KFV01_RS23480 (KFV01_23485) | 1850..1927 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| KFV01_RS23485 (KFV01_23490) | 1908..2789 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| KFV01_RS23490 (KFV01_23495) | 3574..3870 | + | 297 | WP_254888533.1 | SdiA-regulated domain-containing protein | - |
| KFV01_RS23495 (KFV01_23500) | 3967..4725 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| KFV01_RS23500 (KFV01_23505) | 4992..5549 | - | 558 | WP_000725062.1 | Attachment invasion locus protein | VF |
| KFV01_RS23505 (KFV01_23510) | 5639..6538 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| KFV01_RS23510 (KFV01_23515) | 6535..6681 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| KFV01_RS23515 (KFV01_23520) | 6671..7324 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| KFV01_RS23520 (KFV01_23525) | 7569..7919 | - | 351 | WP_001526811.1 | Transcriptional regulatory protein RcsB | VF |
| KFV01_RS23525 (KFV01_23530) | 7904..8116 | - | 213 | WP_000004313.1 | hypothetical protein | VF |
| KFV01_RS23530 (KFV01_23535) | 8548..9423 | - | 876 | WP_010999939.1 | membrane protein | - |
| KFV01_RS23535 (KFV01_23540) | 9676..10233 | - | 558 | WP_010999940.1 | membrane protein | - |
| KFV01_RS23540 (KFV01_23545) | 10248..10940 | - | 693 | WP_001038510.1 | Chaperone protein FaeE | VF |
| KFV01_RS23545 (KFV01_23550) | 10933..13341 | - | 2409 | WP_000007893.1 | Outer membrane usher protein FimD | VF |
| KFV01_RS23550 (KFV01_23555) | 13569..14087 | - | 519 | WP_000748205.1 | hypothetical protein | VF |
| KFV01_RS23555 (KFV01_23560) | 14362..14664 | - | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| KFV01_RS23560 (KFV01_23565) | 15383..15764 | + | 382 | Protein_20 | YgiW/YdeI family stress tolerance OB fold protein | - |
| KFV01_RS23565 (KFV01_23570) | 15933..16377 | + | 445 | Protein_21 | tyrosine-type recombinase/integrase | - |
| KFV01_RS23570 (KFV01_23575) | 16636..17625 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| KFV01_RS23575 (KFV01_23580) | 18119..18415 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| KFV01_RS24215 | 18427..18855 | + | 429 | Protein_24 | hypothetical protein | - |
| KFV01_RS23580 (KFV01_23585) | 18899..19420 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| KFV01_RS23585 (KFV01_23590) | 20096..20314 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| KFV01_RS23590 (KFV01_23595) | 20316..20621 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| KFV01_RS23595 (KFV01_23600) | 20623..20913 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| KFV01_RS23600 (KFV01_23605) | 20910..21431 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| KFV01_RS23605 (KFV01_23610) | 21466..22248 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| KFV01_RS23610 (KFV01_23615) | 22257..22808 | + | 552 | WP_000545754.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| KFV01_RS23615 (KFV01_23620) | 23058..23483 | + | 426 | WP_001134680.1 | CaiF/GrlA family transcriptional regulator | - |
| KFV01_RS23620 (KFV01_23625) | 23477..23962 | + | 486 | WP_000905606.1 | membrane protein | - |
| KFV01_RS23625 (KFV01_23630) | 24239..24526 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| KFV01_RS23630 (KFV01_23635) | 24682..25242 | + | 561 | WP_000900095.1 | Invasin | VF |
| KFV01_RS23635 (KFV01_23640) | 25309..25659 | - | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| KFV01_RS23640 (KFV01_23645) | 25716..26140 | + | 425 | Protein_37 | IS200/IS605 family transposase | - |
| KFV01_RS23645 (KFV01_23650) | 26267..26917 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| KFV01_RS23650 (KFV01_23655) | 27178..27903 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| KFV01_RS23655 (KFV01_23660) | 28185..29960 | - | 1776 | WP_001676648.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| KFV01_RS23660 (KFV01_23665) | 30012..30179 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| KFV01_RS23665 (KFV01_23670) | 30142..30909 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| KFV01_RS23670 (KFV01_23675) | 31083..31247 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| KFV01_RS23675 (KFV01_23680) | 31421..32314 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| KFV01_RS23680 (KFV01_23685) | 32923..33960 | + | 1038 | WP_001121399.1 | IS630 family transposase ISEc33 | Transposase |
| KFV01_RS23685 (KFV01_23690) | 34149..35174 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| KFV01_RS23690 (KFV01_23695) | 35107..36771 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| KFV01_RS23695 (KFV01_23700) | 36755..37315 | - | 561 | WP_001240331.1 | Tn3 family transposase ISPsy42 | Transposase |
| KFV01_RS23700 (KFV01_23705) | 37522..38262 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| KFV01_RS23705 (KFV01_23710) | 38917..39405 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| KFV01_RS23710 (KFV01_23715) | 39664..40779 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| KFV01_RS23715 (KFV01_23720) | 40865..41281 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| KFV01_RS23720 (KFV01_23725) | 41384..41800 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| KFV01_RS23725 (KFV01_23730) | 41857..42458 | + | 602 | Protein_54 | DUF2913 family protein | - |
| KFV01_RS23730 (KFV01_23735) | 42455..43396 | - | 942 | WP_000728917.1 | Recombination-promoting nuclease RpnA | VF |
| KFV01_RS23735 (KFV01_23740) | 43811..45016 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| KFV01_RS23740 (KFV01_23745) | 45016..45990 | + | 975 | WP_000064274.1 | ParB family protein | - |
| KFV01_RS23745 (KFV01_23750) | 46072..47346 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| KFV01_RS23750 (KFV01_23755) | 47346..47768 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| KFV01_RS23755 (KFV01_23760) | 48279..48749 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| KFV01_RS23760 (KFV01_23765) | 48742..49098 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| KFV01_RS24220 | 49036..49317 | - | 282 | WP_146671468.1 | hypothetical protein | - |
| KFV01_RS23765 (KFV01_23770) | 49480..50160 | + | 681 | WP_000088645.1 | DNA methylase | - |
| KFV01_RS23770 (KFV01_23775) | 50160..50381 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| KFV01_RS23775 (KFV01_23780) | 50437..50850 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| KFV01_RS23780 (KFV01_23785) | 50922..51686 | + | 765 | WP_001246548.1 | membrane protein | - |
| KFV01_RS23785 (KFV01_23790) | 52182..52616 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| KFV01_RS23790 (KFV01_23795) | 52683..53117 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| KFV01_RS23795 (KFV01_23800) | 53353..53676 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| KFV01_RS23800 (KFV01_23805) | 53640..53801 | + | 162 | WP_153810625.1 | hypothetical protein | - |
| KFV01_RS23805 (KFV01_23810) | 54395..54913 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| KFV01_RS23810 (KFV01_23815) | 54968..55210 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| KFV01_RS23815 (KFV01_23820) | 55279..57276 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| KFV01_RS23820 (KFV01_23825) | 57316..57750 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| KFV01_RS23825 (KFV01_23830) | 57747..58484 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| KFV01_RS24290 | 58519..58647 | + | 129 | WP_000372429.1 | hypothetical protein | - |
| KFV01_RS23830 (KFV01_23835) | 58733..58891 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| KFV01_RS23835 (KFV01_23840) | 58994..59812 | + | 819 | Protein_78 | DUF932 domain-containing protein | - |
| KFV01_RS23840 (KFV01_23845) | 60123..60593 | - | 471 | WP_001526856.1 | hypothetical protein | VF |
| KFV01_RS23845 (KFV01_23850) | 61008..61388 | + | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| KFV01_RS23850 (KFV01_23855) | 61581..62267 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| KFV01_RS23855 (KFV01_23860) | 62361..62588 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| KFV01_RS23860 (KFV01_23865) | 62630..62992 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| KFV01_RS23865 (KFV01_23870) | 63007..63318 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| KFV01_RS23870 (KFV01_23875) | 63340..63906 | + | 567 | WP_000399769.1 | type IV conjugative transfer system protein TraE | - |
| KFV01_RS23875 (KFV01_23880) | 63893..64633 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| KFV01_RS23880 (KFV01_23885) | 64633..66054 | + | 1422 | WP_000146700.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| KFV01_RS23885 (KFV01_23890) | 66044..66640 | + | 597 | WP_000527896.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| KFV01_RS23890 (KFV01_23895) | 66618..66863 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| KFV01_RS23895 (KFV01_23900) | 66860..67375 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| KFV01_RS23900 (KFV01_23905) | 67510..67731 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| KFV01_RS23905 (KFV01_23910) | 67724..68191 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| KFV01_RS23910 (KFV01_23915) | 68308..68571 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| KFV01_RS23915 (KFV01_23920) | 68587..71235 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| KFV01_RS23920 (KFV01_23925) | 71210..71596 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| KFV01_RS23925 (KFV01_23930) | 71593..72225 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| KFV01_RS23930 (KFV01_23935) | 72222..73214 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| KFV01_RS23935 (KFV01_23940) | 73233..73541 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| KFV01_RS23940 (KFV01_23945) | 73526..74164 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| KFV01_RS23945 (KFV01_23950) | 74201..74620 | + | 420 | WP_001229397.1 | HNH endonuclease signature motif containing protein | - |
| KFV01_RS23950 (KFV01_23955) | 74617..76443 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| KFV01_RS23955 (KFV01_23960) | 76454..76669 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| KFV01_RS23960 (KFV01_23965) | 76681..77430 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| KFV01_RS23965 (KFV01_23970) | 77644..77937 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| KFV01_RS23970 (KFV01_23975) | 77924..78472 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| KFV01_RS23975 (KFV01_23980) | 78462..79844 | + | 1383 | WP_001161719.1 | conjugal transfer pilus assembly protein TraH | - |
| KFV01_RS23980 (KFV01_23985) | 79841..82663 | + | 2823 | WP_001007086.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| KFV01_RS23985 (KFV01_23990) | 82679..83173 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| KFV01_RS23990 (KFV01_23995) | 83209..83940 | + | 732 | WP_000782438.1 | conjugal transfer complement resistance protein TraT | - |
| KFV01_RS23995 (KFV01_24000) | 84317..86560 | + | 2244 | WP_000009320.1 | type IV conjugative transfer system coupling protein TraD | - |
| KFV01_RS24000 (KFV01_24005) | 86569..86967 | - | 399 | WP_000911322.1 | type II toxin-antitoxin system VapC family toxin | - |
| KFV01_RS24005 (KFV01_24010) | 86967..87194 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
| KFV01_RS24010 (KFV01_24015) | 87276..92534 | + | 5259 | WP_000986921.1 | Multifunctional conjugation protein TraI | Relaxase |
| KFV01_RS24015 (KFV01_24020) | 92554..93294 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| KFV01_RS24020 (KFV01_24025) | 93349..93912 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|