MGE detailed information
MGE type: Prophage MGE length: 59579 bp
Accession: NZ_CP074007 Location: 2828395..2887973 Organism: Escherichia coli strain PD4 Replicon: chromosome
Accession: NZ_CP074007 Location: 2828395..2887973 Organism: Escherichia coli strain PD4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU74_RS13535 (2823795) | 2823795..2824217 | + | 423 | WP_001298828.1 | heat shock protein HslJ | - |
| KFU74_RS13540 (2824214) | 2824214..2824480 | - | 267 | WP_001295715.1 | DUF333 domain-containing protein | - |
| KFU74_RS13545 (2824754) | 2824754..2828278 | + | 3525 | WP_000628243.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| KFU74_RS13555 (2829422) | 2829422..2830555 | + | 1134 | WP_000837924.1 | porin OmpN | - |
| KFU74_RS13560 (2830696) | 2830696..2831130 | + | 435 | WP_061103716.1 | universal stress protein UspF | - |
| KFU74_RS13565 (2831396) | 2831396..2831569 | - | 174 | WP_001157925.1 | hypothetical protein | - |
| KFU74_RS13570 (2831909) | 2831909..2832022 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KFU74_RS13575 (2832091) | 2832091..2832324 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KFU74_RS13580 (2832641) | 2832641..2833231 | + | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KFU74_RS13585 (2833329) | 2833329..2833904 | - | 576 | WP_191007410.1 | tail fiber assembly protein | - |
| KFU74_RS13590 (2833904) | 2833904..2837131 | - | 3228 | WP_191007411.1 | prophage tail fiber N-terminal domain-containing protein | - |
| KFU74_RS13595 (2837196) | 2837196..2837795 | - | 600 | WP_001233121.1 | Outer membrane protein X | VF |
| KFU74_RS13600 (2837863) | 2837863..2841342 | - | 3480 | WP_032216160.1 | host specificity protein J | - |
| KFU74_RS13605 (2841403) | 2841403..2842005 | - | 603 | WP_000090943.1 | tail assembly protein | - |
| KFU74_RS13610 (2841942) | 2841942..2842685 | - | 744 | WP_001351716.1 | C40 family peptidase | - |
| KFU74_RS13615 (2842691) | 2842691..2843389 | - | 699 | WP_001152432.1 | phage minor tail protein L | - |
| KFU74_RS13620 (2843389) | 2843389..2843727 | - | 339 | WP_000024051.1 | phage tail protein | - |
| KFU74_RS13625 (2843720) | 2843720..2846953 | - | 3234 | WP_191007413.1 | phage tail tape measure protein | - |
| KFU74_RS13630 (2847427) | 2847427..2847786 | - | 360 | WP_012565075.1 | protein YdaY | - |
| KFU74_RS13635 (2847969) | 2847969..2848898 | - | 930 | WP_001314678.1 | phage tail tube protein | - |
| KFU74_RS13640 (2848925) | 2848925..2849317 | - | 393 | WP_000144678.1 | phage tail terminator-like protein | - |
| KFU74_RS13645 (2849314) | 2849314..2849694 | - | 381 | WP_001029815.1 | hypothetical protein | - |
| KFU74_RS13650 (2849695) | 2849695..2850078 | - | 384 | WP_000524260.1 | hypothetical protein | - |
| KFU74_RS13655 (2850078) | 2850078..2850473 | - | 396 | WP_000634214.1 | hypothetical protein | - |
| KFU74_RS13660 (2850477) | 2850477..2850653 | - | 177 | WP_000908084.1 | hypothetical protein | - |
| KFU74_RS13665 (2850696) | 2850696..2851835 | - | 1140 | WP_257232771.1 | P22 phage major capsid protein family protein | - |
| KFU74_RS13670 (2851934) | 2851934..2852698 | - | 765 | WP_000770042.1 | hypothetical protein | - |
| KFU74_RS13675 (2852803) | 2852803..2853915 | - | 1113 | WP_001351715.1 | phage minor head protein | - |
| KFU74_RS13680 (2853899) | 2853899..2855305 | - | 1407 | WP_000763704.1 | DUF4055 domain-containing protein | - |
| KFU74_RS13685 (2855308) | 2855308..2856609 | - | 1302 | WP_000625348.1 | terminase family protein | - |
| KFU74_RS13690 (2856590) | 2856590..2857684 | - | 1095 | WP_000089447.1 | terminase small subunit | - |
| KFU74_RS13695 (2857688) | 2857688..2857897 | - | 210 | WP_000126788.1 | hypothetical protein | - |
| KFU74_RS13700 (2857875) | 2857875..2858807 | - | 933 | WP_191007414.1 | hypothetical protein | - |
| KFU74_RS13705 (2859334) | 2859334..2859591 | - | 258 | Protein_2674 | ParB/Srx family N-terminal domain-containing protein | - |
| KFU74_RS13710 (2859729) | 2859729..2861186 | - | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| KFU74_RS13715 (2861383) | 2861383..2861568 | - | 186 | WP_001228688.1 | prophage lysis lipoprotein RzoD | - |
| KFU74_RS13720 (2861785) | 2861785..2862282 | - | 498 | WP_001351713.1 | lysozyme RrrD | - |
| KFU74_RS13725 (2862282) | 2862282..2862497 | - | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| KFU74_RS13730 (2862749) | 2862749..2863123 | - | 375 | WP_001348108.1 | cell envelope integrity TolA C-terminal domain-containing protein | - |
| KFU74_RS13735 (2863295) | 2863295..2863555 | - | 261 | Protein_2680 | cell envelope integrity protein TolA | - |
| KFU74_RS13740 (2864768) | 2864768..2865310 | - | 543 | WP_000640161.1 | DUF1133 family protein | - |
| KFU74_RS13745 (2865307) | 2865307..2865597 | - | 291 | WP_000247763.1 | DUF1364 domain-containing protein | - |
| KFU74_RS13750 (2865597) | 2865597..2866196 | - | 600 | WP_025670565.1 | DUF1367 family protein | - |
| KFU74_RS13755 (2866665) | 2866665..2866820 | - | 156 | WP_000813269.1 | type I toxin-antitoxin system toxin HokD | - |
| KFU74_RS13760 (2866892) | 2866892..2867179 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KFU74_RS13765 (2867179) | 2867179..2867418 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KFU74_RS13770 (2867443) | 2867443..2867748 | + | 306 | WP_071600497.1 | protein YdfV | - |
| KFU74_RS13775 (2867951) | 2867951..2868283 | + | 333 | WP_001349760.1 | FlxA-like family protein | - |
| KFU74_RS13780 (2868720) | 2868720..2868869 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| KFU74_RS13785 (2868990) | 2868990..2870039 | - | 1050 | Protein_2690 | ISNCY family transposase ISCARN112 | Transposase |
| KFU74_RS13790 (2870856) | 2870856..2872055 | + | 1200 | WP_001117227.1 | MFS transporter | - |
| KFU74_RS13795 (2872067) | 2872067..2872759 | + | 693 | WP_000957772.1 | gamma-glutamylcyclotransferase | - |
| KFU74_RS13800 (2872756) | 2872756..2873637 | + | 882 | WP_191007415.1 | LysR family transcriptional regulator | - |
| KFU74_RS13805 (2873768) | 2873768..2875045 | - | 1278 | WP_000625667.1 | DUF2254 domain-containing protein | - |
| KFU74_RS13810 (2875109) | 2875109..2877106 | - | 1998 | WP_001676522.1 | choline BCCT transporter BetT | - |
| KFU74_RS13815 (2877447) | 2877447..2877869 | - | 423 | WP_001151151.1 | DUF977 family protein | - |
| KFU74_RS13820 (2877910) | 2877910..2878980 | - | 1071 | WP_001262352.1 | hypothetical protein | - |
| KFU74_RS13825 (2879052) | 2879052..2879477 | - | 426 | WP_000693836.1 | toxin YdaT family protein | - |
| KFU74_RS13830 (2879461) | 2879461..2879742 | - | 282 | WP_000391949.1 | YdaS family helix-turn-helix protein | - |
| KFU74_RS13835 (2879843) | 2879843..2880262 | + | 420 | WP_000362155.1 | hypothetical protein | - |
| KFU74_RS13840 (2880517) | 2880517..2880651 | + | 135 | WP_000233809.1 | phage protein | - |
| KFU74_RS13845 (2880662) | 2880662..2880817 | + | 156 | WP_001169151.1 | YdaF family protein | - |
| KFU74_RS13850 (2880814) | 2880814..2881302 | - | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| KFU74_RS13855 (2881744) | 2881744..2881965 | + | 222 | WP_000560223.1 | killing protein KilR | - |
| KFU74_RS13860 (2881965) | 2881965..2882135 | + | 171 | WP_001352098.1 | YdaE family protein | - |
| KFU74_RS13865 (2882210) | 2882210..2882485 | + | 276 | WP_000632297.1 | protein RacC | - |
| KFU74_RS13870 (2882587) | 2882587..2885187 | + | 2601 | WP_024232464.1 | exodeoxyribonuclease VIII | - |
| KFU74_RS13875 (2885180) | 2885180..2885989 | + | 810 | WP_000166319.1 | recombination protein RecT | - |
| KFU74_RS13880 (2886046) | 2886046..2886240 | + | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| - (2886239) | 2886239..2886417 | - | 179 | NuclAT_0 | - | - |
| - (2886239) | 2886239..2886417 | - | 179 | NuclAT_0 | - | - |
| - (2886239) | 2886239..2886417 | - | 179 | NuclAT_0 | - | - |
| - (2886239) | 2886239..2886417 | - | 179 | NuclAT_0 | - | - |
| KFU74_RS13885 (2886233) | 2886233..2886442 | + | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| KFU74_RS13890 (2886521) | 2886521..2886736 | + | 216 | WP_000079604.1 | excisionase XisR | - |
| KFU74_RS13895 (2886738) | 2886738..2887973 | + | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| KFU74_RS13900 (2888025) | 2888025..2888960 | + | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| KFU74_RS13905 (2889089) | 2889089..2890462 | - | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| KFU74_RS13910 (2890940) | 2890940..2891923 | - | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| KFU74_RS13915 (2891937) | 2891937..2891984 | - | 48 | WP_211180494.1 | protein YnaN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|