MGE detailed information
MGE type: Genomic_island MGE length: 40951 bp
Accession: NZ_CP072849 Location: 2150278..2191228 Organism: Vibrio cholerae MO10 Replicon: chromosome
Accession: NZ_CP072849 Location: 2150278..2191228 Organism: Vibrio cholerae MO10 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAF59_RS09760 (KAF59_09760) | 2145543..2150105 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| KAF59_RS09765 (KAF59_09765) | 2150278..2150925 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| KAF59_RS09770 (KAF59_09770) | 2150928..2151836 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| KAF59_RS09775 (KAF59_09775) | 2151845..2152282 | - | 438 | WP_001899524.1 | RDD family protein | - |
| KAF59_RS09780 (KAF59_09780) | 2152334..2153104 | - | 771 | WP_001880633.1 | accessory colonization factor AcfC | - |
| KAF59_RS09785 (KAF59_09785) | 2153110..2154990 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| KAF59_RS09790 (KAF59_09790) | 2154997..2155758 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| KAF59_RS09795 (KAF59_09795) | 2155758..2156588 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| KAF59_RS09800 (KAF59_09800) | 2156795..2157811 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| KAF59_RS09805 (KAF59_09805) | 2157821..2158843 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| KAF59_RS09810 (KAF59_09810) | 2158818..2160329 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| KAF59_RS09815 (KAF59_09815) | 2160319..2160777 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| KAF59_RS09820 (KAF59_09820) | 2160793..2161629 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| KAF59_RS09825 (KAF59_09825) | 2161617..2162072 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| KAF59_RS09830 (KAF59_09830) | 2162065..2163534 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| KAF59_RS09835 (KAF59_09835) | 2163537..2163989 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| KAF59_RS09840 (KAF59_09840) | 2163989..2165281 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| KAF59_RS09845 (KAF59_09845) | 2165361..2166035 | - | 675 | WP_001176374.1 | toxin-coregulated pilus major pilin TcpA | - |
| KAF59_RS09850 (KAF59_09850) | 2166578..2166988 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| KAF59_RS09855 (KAF59_09855) | 2166973..2167638 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| KAF59_RS09860 (KAF59_09860) | 2168079..2169941 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| KAF59_RS09865 (KAF59_09865) | 2170217..2170711 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| KAF59_RS09870 (KAF59_09870) | 2170821..2171759 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| KAF59_RS09875 (KAF59_09875) | 2171756..2176357 | - | 4602 | WP_000482254.1 | membrane protein | - |
| KAF59_RS09880 (KAF59_09880) | 2176470..2179511 | - | 3042 | WP_001880619.1 | M66 family metalloprotease | - |
| KAF59_RS09885 (KAF59_09885) | 2179691..2181211 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase family protein | - |
| KAF59_RS09890 (KAF59_09890) | 2181553..2182233 | + | 681 | Protein_1922 | IS5 family transposase | - |
| KAF59_RS09895 (KAF59_09895) | 2182259..2183236 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| KAF59_RS09900 (KAF59_09900) | 2183840..2185201 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| KAF59_RS09905 (KAF59_09905) | 2185198..2185665 | + | 468 | WP_000804849.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| KAF59_RS09910 (KAF59_09910) | 2186093..2186671 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| KAF59_RS09915 (KAF59_09915) | 2186675..2189611 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| KAF59_RS09920 (KAF59_09920) | 2189681..2190385 | + | 705 | WP_001880605.1 | nuclease-related domain-containing protein | - |
| KAF59_RS09925 (KAF59_09925) | 2190719..2191228 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| KAF59_RS09930 (KAF59_09930) | 2191426..2193105 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| KAF59_RS09935 (KAF59_09935) | 2193328..2194011 | + | 684 | WP_000841479.1 | VC0807 family protein | - |
| KAF59_RS09940 (KAF59_09940) | 2194079..2195695 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|