MGE detailed information
MGE type: Genomic_island MGE length: 77271 bp
Accession: NZ_CP072204 Location: 4334523..4411793 Organism: Escherichia coli strain LWY6 Replicon: chromosome
Accession: NZ_CP072204 Location: 4334523..4411793 Organism: Escherichia coli strain LWY6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4T81_RS20795 (4329894) | 4329894..4331078 | + | 1185 | WP_001218742.1 | tyrosine-type recombinase/integrase | - |
| J4T81_RS20800 (4331228) | 4331228..4332238 | + | 1011 | WP_000053331.1 | substrate-binding domain-containing protein | - |
| J4T81_RS20805 (4332334) | 4332334..4334460 | + | 2127 | WP_000253907.1 | alpha-galactosidase | - |
| J4T81_RS20810 (4334523) | 4334523..4335800 | + | 1278 | WP_001083368.1 | MFS transporter | - |
| J4T81_RS20815 (4335800) | 4335800..4337230 | + | 1431 | WP_000813678.1 | glycoside hydrolase family 32 protein | - |
| J4T81_RS20820 (4337425) | 4337425..4338819 | + | 1395 | WP_001037798.1 | carbohydrate porin | - |
| J4T81_RS20825 (4339397) | 4339397..4339684 | - | 288 | Protein_4112 | integrase core domain-containing protein | - |
| J4T81_RS20830 (4339673) | 4339673..4340034 | - | 362 | Protein_4113 | IS1 family transposase IS1A | Transposase |
| J4T81_RS20835 (4340084) | 4340084..4341118 | + | 1035 | WP_032153697.1 | tetratricopeptide repeat family protein | - |
| J4T81_RS20840 (4341262) | 4341262..4342935 | - | 1674 | WP_025492097.1 | sulfatase-like hydrolase/transferase | - |
| J4T81_RS20845 (4342988) | 4342988..4343185 | - | 198 | WP_001238004.1 | hypothetical protein | - |
| J4T81_RS20850 (4343325) | 4343325..4343591 | - | 267 | WP_000766274.1 | YkgJ family cysteine cluster protein | - |
| J4T81_RS20855 (4343588) | 4343588..4345159 | - | 1572 | WP_001100182.1 | ATP--cob(I)alamin adenosyltransferase | - |
| J4T81_RS20860 (4345206) | 4345206..4346285 | - | 1080 | WP_001207396.1 | hypothetical protein | - |
| J4T81_RS20865 (4346334) | 4346334..4347230 | - | 897 | WP_000228490.1 | WYL domain-containing protein | - |
| J4T81_RS20870 (4347650) | 4347650..4348387 | - | 738 | WP_001398114.1 | OmpW family outer membrane protein | - |
| J4T81_RS20875 (4348617) | 4348617..4348795 | + | 179 | Protein_4122 | integrase | - |
| J4T81_RS20880 (4349018) | 4349018..4349914 | - | 897 | WP_000499115.1 | hypothetical protein | - |
| J4T81_RS20885 (4349914) | 4349914..4351536 | - | 1623 | WP_000778955.1 | AAA family ATPase | - |
| J4T81_RS20890 (4351545) | 4351545..4352687 | - | 1143 | WP_000742120.1 | restriction endonuclease subunit S | - |
| J4T81_RS20895 (4352684) | 4352684..4354318 | - | 1635 | WP_000627728.1 | class I SAM-dependent DNA methyltransferase | - |
| J4T81_RS20900 (4354382) | 4354382..4357795 | - | 3414 | WP_000438165.1 | DEAD/DEAH box helicase family protein | - |
| J4T81_RS20905 (4358403) | 4358403..4358917 | + | 515 | Protein_4128 | ISL3 family transposase ISEc38 | Transposase |
| J4T81_RS20910 (4359217) | 4359217..4359483 | - | 267 | WP_032153698.1 | MazG-like family protein | - |
| J4T81_RS20915 (4359950) | 4359950..4361032 | + | 1083 | WP_000637419.1 | XRE family transcriptional regulator | - |
| J4T81_RS20920 (4361035) | 4361035..4361979 | - | 945 | WP_000820616.1 | hypothetical protein | - |
| J4T81_RS20925 (4361976) | 4361976..4362956 | - | 981 | WP_000174035.1 | thymidylate synthase | - |
| J4T81_RS20930 (4363124) | 4363124..4364285 | + | 1162 | Protein_4133 | IS3 family transposase IS3 | Transposase |
| J4T81_RS20935 (4364436) | 4364436..4365668 | + | 1233 | WP_000271619.1 | dNTP triphosphohydrolase | - |
| J4T81_RS20940 (4366119) | 4366119..4366382 | - | 264 | Protein_4135 | Pap fimbrial major pilin protein | VF |
| J4T81_RS20945 (4366589) | 4366589..4366903 | - | 315 | WP_000930062.1 | Major pilu subunit operon regulatory protein PapB | VF |
| J4T81_RS20950 (4367326) | 4367326..4367604 | + | 279 | WP_001349530.1 | P fimbrial regulatory protein KS71A | VF |
| J4T81_RS20955 (4367538) | 4367538..4368194 | + | 657 | Protein_4138 | IS91-like element ISVsa3 family transposase | - |
| J4T81_RS24025 (4368225) | 4368225..4369109 | + | 885 | WP_104213629.1 | DUF3363 domain-containing protein | - |
| J4T81_RS20965 (4369326) | 4369326..4370540 | + | 1215 | WP_058657119.1 | Bicyclomycin resistance protein | ARG |
| J4T81_RS20970 (4370568) | 4370568..4370873 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| J4T81_RS20975 (4370985) | 4370985..4371173 | + | 189 | Protein_4142 | IS91 family transposase | - |
| J4T81_RS20980 (4371140) | 4371140..4372339 | - | 1200 | WP_000804063.1 | Tetracycline resistance protein, class C | ARG |
| J4T81_RS20985 (4372445) | 4372445..4373095 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| J4T81_RS20990 (4373127) | 4373127..4373369 | - | 243 | WP_000844627.1 | transposase | - |
| J4T81_RS20995 (4373675) | 4373675..4374511 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| J4T81_RS21000 (4374511) | 4374511..4375314 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| J4T81_RS21005 (4375375) | 4375375..4376190 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| J4T81_RS21010 (4376431) | 4376431..4376997 | - | 567 | WP_000919994.1 | hypothetical protein | - |
| J4T81_RS24030 (4377860) | 4377860..4378035 | - | 176 | Protein_4150 | transposase | - |
| J4T81_RS21020 (4378224) | 4378224..4378400 | - | 177 | Protein_4151 | transketolase family protein | - |
| J4T81_RS21025 (4378460) | 4378460..4379151 | + | 692 | Protein_4152 | IS1 family transposase | - |
| J4T81_RS21030 (4379554) | 4379554..4379745 | + | 192 | WP_001323513.1 | hypothetical protein | - |
| J4T81_RS21035 (4379814) | 4379814..4380062 | + | 249 | WP_001349534.1 | ProQ/FINO family protein | - |
| J4T81_RS21040 (4380081) | 4380081..4380629 | - | 549 | WP_032153702.1 | hypothetical protein | - |
| J4T81_RS21045 (4380898) | 4380898..4381134 | - | 237 | WP_000958154.1 | AlpA family transcriptional regulator | - |
| J4T81_RS21050 (4381203) | 4381203..4381775 | - | 573 | WP_032153703.1 | hypothetical protein | - |
| J4T81_RS21055 (4381790) | 4381790..4381939 | + | 150 | WP_001421645.1 | hypothetical protein | - |
| J4T81_RS21060 (4382059) | 4382059..4382625 | - | 567 | WP_032153705.1 | inovirus-type Gp2 protein | - |
| J4T81_RS21065 (4384222) | 4384222..4385826 | - | 1605 | WP_001067608.1 | YfjI family protein | - |
| J4T81_RS24035 (4386260) | 4386260..4386466 | + | 207 | WP_025492114.1 | hypothetical protein | - |
| J4T81_RS24040 (4386478) | 4386478..4386738 | - | 261 | WP_223362175.1 | hypothetical protein | - |
| J4T81_RS24045 (4386762) | 4386762..4386917 | + | 156 | WP_020923993.1 | hypothetical protein | - |
| J4T81_RS21075 (4387011) | 4387011..4387742 | - | 732 | WP_032153707.1 | inovirus Gp2 family protein | - |
| J4T81_RS21080 (4389493) | 4389493..4390302 | + | 810 | WP_032153709.1 | hypothetical protein | - |
| J4T81_RS21085 (4390299) | 4390299..4391231 | - | 933 | WP_023155730.1 | hypothetical protein | - |
| J4T81_RS21090 (4391338) | 4391338..4392222 | + | 885 | WP_024166630.1 | 50S ribosome-binding GTPase | - |
| J4T81_RS21095 (4392341) | 4392341..4393018 | + | 678 | WP_023155728.1 | hypothetical protein | - |
| J4T81_RS21100 (4393048) | 4393048..4393257 | + | 210 | WP_023155727.1 | DUF905 family protein | - |
| J4T81_RS21105 (4393348) | 4393348..4394166 | + | 819 | WP_001234693.1 | DUF932 domain-containing protein | - |
| J4T81_RS21110 (4394258) | 4394258..4394743 | + | 486 | WP_032153711.1 | antirestriction protein | - |
| J4T81_RS21115 (4394759) | 4394759..4395235 | + | 477 | WP_001186715.1 | RadC family protein | - |
| J4T81_RS21120 (4395304) | 4395304..4395525 | + | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| J4T81_RS21125 (4395605) | 4395605..4395979 | + | 375 | WP_032153712.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| J4T81_RS21130 (4396026) | 4396026..4396295 | + | 270 | Protein_4175 | TA system toxin CbtA family protein | - |
| J4T81_RS21135 (4396297) | 4396297..4396518 | + | 222 | Protein_4176 | cupin fold metalloprotein, WbuC family | - |
| J4T81_RS21140 (4396565) | 4396565..4397440 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| J4T81_RS21145 (4397693) | 4397693..4398955 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| J4T81_RS21150 (4399128) | 4399128..4399253 | + | 126 | Protein_4179 | TA system toxin CbtA family protein | - |
| J4T81_RS21155 (4399250) | 4399250..4399741 | + | 492 | WP_023155722.1 | DUF5983 family protein | - |
| J4T81_RS21160 (4399753) | 4399753..4399950 | + | 198 | WP_000839265.1 | DUF957 domain-containing protein | - |
| J4T81_RS21165 (4400035) | 4400035..4400901 | + | 867 | WP_032153714.1 | DUF4942 domain-containing protein | - |
| J4T81_RS21170 (4400973) | 4400973..4401236 | + | 264 | WP_025492088.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| J4T81_RS21175 (4401233) | 4401233..4401559 | + | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| J4T81_RS21180 (4402442) | 4402442..4403980 | + | 1539 | WP_001187183.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| J4T81_RS21185 (4404346) | 4404346..4405680 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| J4T81_RS21190 (4405760) | 4405760..4407907 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| J4T81_RS21195 (4407966) | 4407966..4409423 | + | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| J4T81_RS21200 (4409660) | 4409660..4411177 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| J4T81_RS21205 (4411296) | 4411296..4411469 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| J4T81_RS21210 (4411497) | 4411497..4411793 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| J4T81_RS21215 (4412020) | 4412020..4412292 | - | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| J4T81_RS21220 (4412304) | 4412304..4412534 | - | 231 | WP_000371698.1 | 4Fe-4S mono-cluster protein YjdI | - |
| J4T81_RS21225 (4412715) | 4412715..4414346 | + | 1632 | WP_001216461.1 | sensor histidine kinase | - |
| J4T81_RS21230 (4414343) | 4414343..4415062 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|