MGE detailed information
MGE type: Prophage MGE length: 80410 bp
Accession: NZ_CP070920 Location: 3658910..3739319 Organism: Escherichia coli strain 40EC Replicon: chromosome
Accession: NZ_CP070920 Location: 3658910..3739319 Organism: Escherichia coli strain 40EC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JR909_RS17680 () | 3654058..3655014 | + | 957 | WP_000121319.1 | molybdenum cofactor insertion chaperone PaoD | - |
| JR909_RS17685 () | 3655065..3655403 | + | 339 | Protein_3462 | LysR family transcriptional regulator | - |
| JR909_RS17690 () | 3655968..3657107 | + | 1140 | WP_000784327.1 | hypothetical protein | - |
| JR909_RS17695 () | 3657661..3658875 | + | 1215 | WP_012602456.1 | type II restriction endonuclease | - |
| JR909_RS17700 () | 3658910..3660313 | - | 1404 | WP_072095179.1 | DNA cytosine methyltransferase | - |
| JR909_RS17705 () | 3660750..3661523 | + | 774 | WP_000355481.1 | hypothetical protein | - |
| JR909_RS17710 () | 3661584..3662138 | - | 555 | WP_001568589.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| JR909_RS17715 () | 3662165..3662365 | + | 201 | WP_205899224.1 | hypothetical protein | - |
| JR909_RS17720 () | 3662399..3663103 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| JR909_RS17725 () | 3663394..3663825 | + | 432 | WP_000416463.1 | tail fiber assembly protein | - |
| JR909_RS17730 () | 3663797..3664399 | - | 603 | WP_001057699.1 | tail fiber assembly protein | - |
| JR909_RS17735 () | 3664399..3665181 | - | 783 | WP_205899225.1 | tail fiber protein | - |
| JR909_RS17740 () | 3665185..3665769 | - | 585 | WP_000383540.1 | YmfQ family protein | - |
| JR909_RS17745 () | 3665760..3666818 | - | 1059 | WP_000785334.1 | baseplate J/gp47 family protein | - |
| JR909_RS17750 () | 3666805..3667230 | - | 426 | WP_000424737.1 | phage GP46 family protein | - |
| JR909_RS17755 () | 3667230..3667778 | - | 549 | WP_001259079.1 | phage baseplate assembly protein V | - |
| JR909_RS17760 () | 3667778..3668857 | - | 1080 | WP_000999506.1 | baseplate protein | - |
| JR909_RS17765 () | 3668854..3670182 | - | 1329 | WP_000219910.1 | DNA circularization N-terminal domain-containing protein | - |
| JR909_RS17770 () | 3670243..3672078 | - | 1836 | WP_000807197.1 | phage tail tape measure protein | - |
| JR909_RS17775 () | 3672220..3672489 | - | 270 | WP_000661054.1 | phage tail assembly protein | - |
| JR909_RS17780 () | 3672489..3672845 | - | 357 | WP_000090993.1 | phage tail tube protein | - |
| JR909_RS17785 () | 3672845..3674341 | - | 1497 | WP_000155730.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JR909_RS17790 () | 3674325..3674495 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| JR909_RS17795 () | 3674504..3675064 | - | 561 | WP_000779279.1 | hypothetical protein | - |
| JR909_RS17800 () | 3675061..3675567 | - | 507 | WP_000224835.1 | hypothetical protein | - |
| JR909_RS17805 () | 3675542..3675952 | - | 411 | WP_000702401.1 | phage head closure protein | - |
| JR909_RS17810 () | 3675949..3676272 | - | 324 | WP_000927711.1 | head-tail connector protein | - |
| JR909_RS17815 () | 3676275..3676475 | - | 201 | WP_000601365.1 | hypothetical protein | - |
| JR909_RS17820 () | 3676524..3677729 | - | 1206 | WP_000257490.1 | phage major capsid protein | - |
| JR909_RS17825 () | 3677744..3678394 | - | 651 | WP_001193632.1 | HK97 family phage prohead protease | - |
| JR909_RS17830 () | 3678372..3679613 | - | 1242 | WP_000466255.1 | phage portal protein | - |
| JR909_RS17835 () | 3679613..3679795 | - | 183 | WP_000605614.1 | hypothetical protein | - |
| JR909_RS17840 () | 3679807..3681303 | - | 1497 | WP_072011717.1 | terminase large subunit | - |
| JR909_RS17845 () | 3681537..3682031 | - | 495 | WP_122986103.1 | phage terminase small subunit P27 family | - |
| JR909_RS17850 () | 3682157..3682507 | - | 351 | WP_001131133.1 | HNH endonuclease | - |
| JR909_RS17855 () | 3682658..3682993 | + | 336 | WP_001089763.1 | hypothetical protein | - |
| JR909_RS17860 () | 3683094..3683663 | + | 570 | WP_000613842.1 | hypothetical protein | - |
| JR909_RS17865 () | 3683685..3683942 | - | 258 | WP_122986267.1 | peptidase | - |
| JR909_RS17870 () | 3683827..3684219 | - | 393 | WP_001356320.1 | DUF2570 domain-containing protein | - |
| JR909_RS17875 () | 3684203..3684679 | - | 477 | WP_001148538.1 | glycoside hydrolase family protein | - |
| JR909_RS17880 () | 3684683..3685009 | - | 327 | WP_001532222.1 | phage holin, lambda family | - |
| JR909_RS17885 () | 3685086..3686138 | - | 1053 | WP_000799659.1 | site-specific DNA-methyltransferase | - |
| JR909_RS17890 () | 3686289..3686492 | - | 204 | WP_000917730.1 | hypothetical protein | - |
| JR909_RS17895 () | 3686893..3687756 | + | 864 | WP_000750482.1 | NYN domain-containing protein | - |
| JR909_RS17900 () | 3687769..3688134 | - | 366 | WP_077908626.1 | antitermination protein Q | - |
| JR909_RS17905 () | 3688150..3689139 | - | 990 | WP_001420253.1 | DUF968 domain-containing protein | - |
| JR909_RS17910 () | 3689147..3689956 | - | 810 | WP_205899226.1 | KilA-N domain-containing protein | - |
| JR909_RS17915 () | 3689976..3690365 | - | 390 | WP_000767111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JR909_RS17920 () | 3690362..3690688 | - | 327 | WP_000210164.1 | LexA family transcriptional regulator | - |
| JR909_RS17925 () | 3690685..3691338 | - | 654 | WP_059275986.1 | phage N-6-adenine-methyltransferase | - |
| JR909_RS17930 () | 3691338..3691832 | - | 495 | WP_072248950.1 | PerC family transcriptional regulator | - |
| JR909_RS17935 () | 3691829..3692770 | - | 942 | WP_205899227.1 | helix-turn-helix domain-containing protein | - |
| JR909_RS17940 () | 3692760..3692939 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| JR909_RS17945 () | 3693115..3693666 | - | 552 | WP_001434539.1 | hypothetical protein | - |
| JR909_RS17950 () | 3693704..3693904 | - | 201 | WP_000205494.1 | cell division protein | - |
| JR909_RS17955 () | 3694002..3694628 | + | 627 | WP_000450735.1 | LexA family transcriptional regulator | - |
| JR909_RS17960 () | 3694876..3695082 | + | 207 | WP_000549623.1 | hypothetical protein | - |
| JR909_RS17965 () | 3695054..3695488 | - | 435 | WP_000016389.1 | hypothetical protein | - |
| JR909_RS17970 () | 3696033..3696569 | + | 537 | WP_089529722.1 | 5'-deoxynucleotidase | - |
| JR909_RS17975 () | 3696560..3696922 | + | 363 | WP_001242749.1 | phage protein | - |
| JR909_RS17980 () | 3696922..3697227 | + | 306 | WP_000206732.1 | hypothetical protein | - |
| JR909_RS17985 () | 3697454..3698617 | + | 1164 | WP_000051887.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| JR909_RS17995 () | 3698822..3700075 | - | 1254 | WP_000893255.1 | glutamate-5-semialdehyde dehydrogenase | - |
| JR909_RS18000 () | 3700087..3701190 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| JR909_RS18005 () | 3701478..3702533 | + | 1056 | WP_000749865.1 | phosphoporin PhoE | - |
| JR909_RS18010 () | 3702572..3702973 | - | 402 | WP_001542655.1 | sigma factor-binding protein Crl | - |
| JR909_RS18015 () | 3703031..3704275 | - | 1245 | WP_000189543.1 | esterase FrsA | - |
| - () | 3703691..3703771 | - | 81 | NuclAT_11 | - | - |
| - () | 3703691..3703771 | - | 81 | NuclAT_11 | - | - |
| - () | 3703691..3703771 | - | 81 | NuclAT_11 | - | - |
| - () | 3703691..3703771 | - | 81 | NuclAT_11 | - | - |
| JR909_RS18020 () | 3704367..3704825 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| JR909_RS18025 () | 3705086..3706543 | + | 1458 | WP_001293016.1 | cytosol nonspecific dipeptidase | - |
| JR909_RS18030 () | 3706600..3707214 | - | 615 | WP_000602112.1 | peptide chain release factor H | - |
| JR909_RS18035 () | 3707211..3708350 | - | 1140 | WP_000528869.1 | RNA ligase RtcB family protein | - |
| JR909_RS18040 () | 3708596..3709048 | - | 453 | WP_001059855.1 | GNAT family N-acetyltransferase | - |
| JR909_RS18045 () | 3709045..3710100 | - | 1056 | WP_001226182.1 | DNA polymerase IV | - |
| JR909_RS18050 () | 3710171..3710956 | - | 786 | WP_000207568.1 | Chemotaxis protein LafU | VF |
| JR909_RS18055 () | 3710928..3712640 | + | 1713 | Protein_3535 | Flagellar biosynthesis protein FlhA | VF |
| JR909_RS18060 () | 3712745..3713023 | + | 279 | WP_000598760.1 | type II toxin-antitoxin system HicA family toxin | - |
| JR909_RS18065 () | 3713016..3713372 | + | 357 | WP_001030484.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| JR909_RS18070 () | 3713429..3714202 | - | 774 | WP_000543899.1 | Murein DD-endopeptidase MepH | VF |
| JR909_RS18075 () | 3714388..3714648 | + | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| JR909_RS18080 () | 3714651..3714929 | + | 279 | WP_000615976.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| JR909_RS18085 () | 3715085..3715825 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| JR909_RS18090 () | 3715796..3716563 | - | 768 | WP_205899228.1 | class II glutamine amidotransferase | - |
| JR909_RS18095 () | 3716769..3717347 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| JR909_RS18100 () | 3717587..3720031 | + | 2445 | WP_000973081.1 | Acyl-coenzyme A dehydrogenase | VF |
| JR909_RS18105 () | 3720074..3720520 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| JR909_RS18110 () | 3720701..3721471 | + | 771 | WP_001542654.1 | 2-oxoglutaramate amidase | - |
| JR909_RS18120 () | 3721779..3722510 | - | 732 | WP_001366128.1 | DNA polymerase III subunit epsilon | - |
| JR909_RS18125 () | 3722575..3723042 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| JR909_RS18130 () | 3723039..3723761 | - | 723 | WP_001307587.1 | class I SAM-dependent methyltransferase | - |
| JR909_RS18135 () | 3723795..3724550 | + | 756 | WP_001052720.1 | hydroxyacylglutathione hydrolase | - |
| JR909_RS18140 () | 3724622..3725980 | + | 1359 | WP_000644686.1 | Membrane-bound lytic murein transglycosylase D | VF |
| JR909_RS18145 () | 3726028..3726798 | - | 771 | WP_001402034.1 | methyltransferase domain-containing protein | - |
| JR909_RS18150 () | 3726876..3727676 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| JR909_RS18155 () | 3727917..3728831 | + | 915 | WP_001402033.1 | HTH-type transcriptional regulator DmlR | VF |
| JR909_RS18160 () | 3728828..3728998 | - | 171 | Protein_3555 | 2,5-didehydrogluconate reductase DkgB | - |
| JR909_RS18165 () | 3729009..3730145 | - | 1137 | WP_001542652.1 | ISAs1 family transposase ISEc1 | Transposase |
| JR909_RS18170 () | 3730315..3730455 | - | 141 | WP_157914090.1 | hypothetical protein | - |
| JR909_RS18175 () | 3730692..3731156 | + | 465 | WP_001542651.1 | hypothetical protein | - |
| JR909_RS18180 () | 3731323..3731937 | - | 615 | WP_001542650.1 | SMI1/KNR4 family protein | - |
| JR909_RS18185 () | 3731983..3732180 | - | 198 | WP_001542649.1 | hypothetical protein | - |
| JR909_RS18190 () | 3732189..3736610 | - | 4422 | WP_205899229.1 | PAAR domain-containing protein | - |
| JR909_RS18195 () | 3736641..3737072 | - | 432 | WP_001402128.1 | DUF1795 domain-containing protein | - |
| JR909_RS18200 () | 3737100..3739319 | - | 2220 | WP_001542647.1 | Actin cross-linking toxin VgrG1 | VF |
| JR909_RS18205 () | 3739344..3739691 | - | 348 | WP_100224276.1 | hypothetical protein | - |
| JR909_RS18210 () | 3739712..3740278 | - | 567 | WP_001402126.1 | hypothetical protein | - |
| JR909_RS18215 () | 3740495..3741271 | - | 777 | WP_024166652.1 | DUF2094 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|