MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 62651 bp
Accession: NZ_CP069605 Location: 1548924..1611574 Organism: Dickeya dianthicola strain 16JP03 Replicon: chromosome
Accession: NZ_CP069605 Location: 1548924..1611574 Organism: Dickeya dianthicola strain 16JP03 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRZ92_RS07220 (JRZ92_07235) | 1545589..1545951 | - | 363 | WP_035071708.1 | arsenite efflux transporter metallochaperone ArsD | - |
| JRZ92_RS07225 (JRZ92_07240) | 1545999..1546352 | - | 354 | WP_274519689.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| JRZ92_RS07230 (JRZ92_07245) | 1546736..1547532 | + | 797 | WP_234003755.1 | IS5 family transposase | - |
| JRZ92_RS07235 (JRZ92_07250) | 1547880..1548254 | + | 375 | WP_024106445.1 | hypothetical protein | - |
| JRZ92_RS07240 (JRZ92_07255) | 1548334..1548738 | + | 405 | WP_024106444.1 | DUF2513 domain-containing protein | - |
| JRZ92_RS07245 (JRZ92_07260) | 1549224..1550218 | - | 995 | Protein_1416 | IS3 family transposase | - |
| JRZ92_RS07250 (JRZ92_07265) | 1550458..1551207 | - | 750 | WP_024108537.1 | putative oxidoreductase YgfF | VF |
| JRZ92_RS07255 (JRZ92_07270) | 1551211..1552464 | - | 1254 | WP_024108538.1 | MFS transporter | - |
| JRZ92_RS07260 (JRZ92_07275) | 1552771..1553664 | + | 894 | WP_024108539.1 | phosphoenolpyruvate mutase | - |
| JRZ92_RS07265 (JRZ92_07280) | 1553668..1554786 | + | 1119 | WP_024108540.1 | phosphonopyruvate decarboxylase | - |
| JRZ92_RS07270 (JRZ92_07285) | 1554776..1555996 | + | 1221 | WP_026594701.1 | pyridoxal phosphate-dependent aminotransferase | - |
| JRZ92_RS07275 (JRZ92_07290) | 1556011..1556847 | + | 837 | WP_024108542.1 | phytanoyl-CoA dioxygenase family protein | - |
| JRZ92_RS07280 (JRZ92_07295) | 1556860..1557969 | + | 1110 | WP_024108543.1 | 2-aminoethylphosphonate--pyruvate transaminase | - |
| JRZ92_RS07285 (JRZ92_07300) | 1557966..1559066 | + | 1101 | WP_103415789.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| JRZ92_RS07290 (JRZ92_07305) | 1559056..1560075 | + | 1020 | WP_024108545.1 | GNAT family N-acetyltransferase | - |
| JRZ92_RS07295 (JRZ92_07310) | 1560068..1560232 | + | 165 | WP_116587115.1 | Trm112 family protein | - |
| JRZ92_RS07300 (JRZ92_07315) | 1560235..1561062 | + | 828 | WP_024108546.1 | class I SAM-dependent methyltransferase | - |
| JRZ92_RS07305 (JRZ92_07320) | 1561059..1562255 | + | 1197 | WP_024108547.1 | ATP-grasp domain-containing protein | - |
| JRZ92_RS07310 (JRZ92_07325) | 1562257..1562946 | + | 690 | WP_024108548.1 | aspartyl/asparaginyl beta-hydroxylase domain-containing protein | - |
| JRZ92_RS07315 (JRZ92_07330) | 1563022..1563993 | + | 972 | WP_024108549.1 | IS481 family transposase | - |
| JRZ92_RS07320 (JRZ92_07335) | 1564033..1564255 | - | 223 | Protein_1431 | IS4/IS5 family transposase | - |
| JRZ92_RS07325 (JRZ92_07340) | 1564382..1570201 | - | 5820 | WP_024108550.1 | DEAD/DEAH box helicase | - |
| JRZ92_RS07330 (JRZ92_07345) | 1570221..1572314 | - | 2094 | WP_024108551.1 | hypothetical protein | - |
| JRZ92_RS07335 (JRZ92_07350) | 1572326..1574899 | - | 2574 | WP_024108552.1 | hypothetical protein | - |
| JRZ92_RS07340 (JRZ92_07355) | 1574896..1576125 | - | 1230 | WP_024108553.1 | DNA cytosine methyltransferase | - |
| JRZ92_RS07345 (JRZ92_07360) | 1576824..1577768 | + | 945 | WP_116587116.1 | zincin-like metallopeptidase domain-containing protein | - |
| JRZ92_RS07350 (JRZ92_07365) | 1578095..1578331 | + | 237 | WP_024108942.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| JRZ92_RS07355 (JRZ92_07370) | 1578334..1578648 | + | 315 | WP_024108941.1 | CcdB family protein | Toxin Detail |
| JRZ92_RS07360 (JRZ92_07375) | 1579128..1579910 | + | 783 | WP_024108940.1 | hypothetical protein | - |
| JRZ92_RS07365 (JRZ92_07380) | 1580197..1580943 | - | 747 | WP_103415724.1 | MobC family replication-relaxation protein | - |
| JRZ92_RS07370 (JRZ92_07385) | 1580952..1582715 | - | 1764 | WP_103415725.1 | type IV secretion system DNA-binding domain-containing protein | - |
| JRZ92_RS07375 (JRZ92_07390) | 1583439..1583741 | - | 303 | WP_103415726.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| JRZ92_RS07380 (JRZ92_07395) | 1583785..1584788 | - | 1004 | Protein_1443 | Type IV secretion system protein VirB11 | VF |
| JRZ92_RS07385 (JRZ92_07400) | 1584846..1585742 | - | 897 | WP_198298637.1 | P-type conjugative transfer protein VirB9 | - |
| JRZ92_RS07390 (JRZ92_07405) | 1585739..1586422 | - | 684 | WP_024106436.1 | Type IV secretion system protein PtlE | VF |
| JRZ92_RS07395 (JRZ92_07410) | 1586643..1587671 | - | 1029 | WP_024106435.1 | type IV secretion system protein | - |
| JRZ92_RS07400 (JRZ92_07415) | 1587683..1587907 | - | 225 | WP_012769218.1 | EexN family lipoprotein | - |
| JRZ92_RS07405 (JRZ92_07420) | 1587918..1588634 | - | 717 | WP_103415728.1 | type IV secretion system protein | - |
| JRZ92_RS07410 (JRZ92_07425) | 1588659..1590623 | - | 1965 | WP_103415729.1 | Type IV secretion system protein virB4 | VF |
| JRZ92_RS07415 (JRZ92_07430) | 1590634..1590909 | - | 276 | WP_035044784.1 | hypothetical protein | VF |
| JRZ92_RS07420 (JRZ92_07435) | 1590929..1591576 | - | 648 | WP_026594786.1 | Type IV secretion system protein virB1 | VF |
| JRZ92_RS07425 (JRZ92_07440) | 1591647..1591880 | - | 234 | WP_024106431.1 | hypothetical protein | - |
| JRZ92_RS07430 (JRZ92_07445) | 1592357..1594084 | + | 1728 | WP_103415730.1 | AIPR family protein | - |
| JRZ92_RS07435 (JRZ92_07450) | 1594380..1594583 | - | 204 | WP_103415731.1 | TraR/DksA family transcriptional regulator | - |
| JRZ92_RS07440 (JRZ92_07455) | 1594573..1595157 | - | 585 | WP_103415732.1 | DUF2857 domain-containing protein | - |
| JRZ92_RS07445 (JRZ92_07460) | 1595174..1595368 | - | 195 | WP_012884167.1 | AlpA family transcriptional regulator | - |
| JRZ92_RS07450 (JRZ92_07465) | 1596035..1596292 | - | 258 | WP_024106427.1 | helix-turn-helix transcriptional regulator | - |
| JRZ92_RS07455 (JRZ92_07470) | 1596406..1596684 | - | 279 | WP_024106426.1 | HTH-type transcriptional regulator Xre | VF |
| JRZ92_RS07460 (JRZ92_07475) | 1596818..1597105 | + | 288 | WP_103415733.1 | helix-turn-helix transcriptional regulator | - |
| JRZ92_RS07465 (JRZ92_07480) | 1597384..1597629 | - | 246 | WP_013318575.1 | helix-turn-helix transcriptional regulator | - |
| JRZ92_RS07470 (JRZ92_07485) | 1598387..1598905 | + | 519 | WP_012768188.1 | Major exported protein | VF |
| JRZ92_RS07475 (JRZ92_07490) | 1599019..1600872 | + | 1854 | WP_103415734.1 | Actin cross-linking toxin VgrG1 | VF |
| JRZ92_RS07480 (JRZ92_07495) | 1600887..1601294 | + | 408 | WP_024106422.1 | DUF1795 domain-containing protein | - |
| JRZ92_RS07485 (JRZ92_07500) | 1601306..1605655 | + | 4350 | WP_234003752.1 | RHS repeat-associated core domain-containing protein | - |
| JRZ92_RS07490 (JRZ92_07505) | 1605655..1606020 | + | 366 | WP_024106420.1 | hypothetical protein | - |
| JRZ92_RS07495 (JRZ92_07510) | 1606075..1607028 | + | 954 | Protein_1466 | putative deoxyribonuclease RhsA | VF |
| JRZ92_RS07500 (JRZ92_07515) | 1607025..1607456 | + | 432 | WP_024106418.1 | SMI1/KNR4 family protein | - |
| JRZ92_RS07505 (JRZ92_07520) | 1607706..1608632 | - | 927 | WP_024106417.1 | hypothetical protein | - |
| JRZ92_RS07510 (JRZ92_07525) | 1609648..1609959 | + | 312 | WP_024106415.1 | DUF736 domain-containing protein | - |
| JRZ92_RS07515 (JRZ92_07530) | 1610114..1611397 | - | 1284 | WP_103415735.1 | Prophage integrase IntA ; Integrase | Integrase |
| JRZ92_RS07525 (JRZ92_07540) | 1611833..1614964 | - | 3132 | WP_029729363.1 | beta-galactosidase | - |
| JRZ92_RS07530 (JRZ92_07545) | 1615164..1616237 | - | 1074 | WP_024105240.1 | LacI family DNA-binding transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|