MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 73582 bp
Accession: NZ_CP068826 Location: 828257..901838 Organism: Escherichia coli strain RIVM_C030300 Replicon: chromosome
Accession: NZ_CP068826 Location: 828257..901838 Organism: Escherichia coli strain RIVM_C030300 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN53_RS03895 () | 824858..826006 | - | 1149 | WP_000905920.1 | capsule polysaccharide export inner-membrane protein KpsE | - |
| JNN53_RS03900 () | 826078..827061 | - | 984 | WP_001296394.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| JNN53_RS03905 () | 827871..828041 | - | 171 | Protein_766 | IS110 family transposase | - |
| JNN53_RS03910 () | 828384..829226 | - | 843 | Protein_767 | DUF4942 domain-containing protein | - |
| JNN53_RS03915 () | 829311..829505 | - | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| JNN53_RS03920 () | 829584..829733 | - | 150 | Protein_769 | hypothetical protein | - |
| JNN53_RS03925 () | 829730..830107 | - | 378 | WP_001564063.1 | TA system toxin CbtA family protein | Toxin Detail |
| JNN53_RS03930 () | 830197..830565 | - | 369 | WP_021553056.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| JNN53_RS03935 () | 830728..830949 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| JNN53_RS03940 () | 831014..831490 | - | 477 | WP_021553055.1 | RadC family protein | - |
| JNN53_RS03945 () | 831506..831985 | - | 480 | WP_001564060.1 | antirestriction protein | - |
| JNN53_RS03950 () | 832251..833069 | - | 819 | WP_001564059.1 | DUF945 domain-containing protein | - |
| JNN53_RS03955 () | 833159..833392 | - | 234 | WP_001278293.1 | DUF905 family protein | - |
| JNN53_RS03960 () | 833398..834075 | - | 678 | WP_001564058.1 | hypothetical protein | - |
| JNN53_RS03965 () | 834226..834906 | - | 681 | WP_001278649.1 | WYL domain-containing protein | - |
| JNN53_RS03970 () | 835109..835993 | - | 885 | WP_001564055.1 | 50S ribosome-binding GTPase | - |
| JNN53_RS03975 () | 836094..837317 | + | 1224 | WP_001107219.1 | hypothetical protein | - |
| JNN53_RS03980 () | 838480..839010 | - | 531 | WP_000778605.1 | hypothetical protein | - |
| JNN53_RS03985 () | 839680..840411 | + | 732 | WP_001075495.1 | inovirus Gp2 family protein | - |
| JNN53_RS03990 () | 840932..841384 | + | 453 | WP_000558152.1 | N-acetyltransferase | - |
| JNN53_RS03995 () | 841920..842855 | + | 936 | WP_000332862.1 | pseudouridine kinase | - |
| JNN53_RS04000 () | 842848..843783 | + | 936 | WP_001290195.1 | pseudouridine-5'-phosphate glycosidase | - |
| JNN53_RS04005 () | 843867..845117 | + | 1251 | WP_001328687.1 | NupC/NupG family nucleoside CNT transporter | - |
| JNN53_RS04010 () | 845136..846230 | - | 1095 | WP_000370278.1 | sugar kinase | - |
| JNN53_RS04015 () | 847531..848097 | + | 567 | WP_001126810.1 | inovirus-type Gp2 protein | - |
| JNN53_RS04020 () | 848355..848930 | + | 576 | WP_001564054.1 | hypothetical protein | - |
| JNN53_RS04025 () | 848999..849232 | + | 234 | WP_000958492.1 | AlpA family transcriptional regulator | - |
| JNN53_RS04030 () | 849244..849469 | + | 226 | Protein_791 | hypothetical protein | - |
| JNN53_RS04035 () | 849531..849797 | - | 267 | Protein_792 | IS3 family transposase IS2 | Transposase |
| JNN53_RS04040 () | 849888..851045 | + | 1158 | Protein_793 | Multidrug resistance protein MexB | VF |
| JNN53_RS04045 () | 851166..851816 | + | 651 | WP_001564048.1 | TetR/AcrR family transcriptional regulator | - |
| JNN53_RS04050 () | 851839..852132 | + | 294 | Protein_795 | helix-turn-helix domain-containing protein | - |
| JNN53_RS04055 () | 852489..853034 | - | 546 | WP_001564047.1 | propanediol utilization system shell hexameric protein GrpS | - |
| JNN53_RS04060 () | 853079..854230 | - | 1152 | WP_001001003.1 | propanediol utilization system methionine adenosyltransferase GrpR | - |
| JNN53_RS04065 () | 854359..855414 | - | 1056 | WP_001564046.1 | HTH-type transcriptional activator Btr | VF |
| JNN53_RS04070 () | 855431..856660 | - | 1230 | WP_000792585.1 | propanediol utilization sensor histidine kinase GrpP | - |
| JNN53_RS04075 () | 857276..857869 | - | 594 | Protein_800 | maturase | - |
| JNN53_RS04080 () | 857869..858238 | - | 370 | Protein_801 | reverse transcriptase/maturase | - |
| JNN53_RS04085 () | 858850..859755 | - | 906 | WP_001564044.1 | propanediol utilization system permease GrpO | - |
| JNN53_RS04090 () | 859892..860809 | - | 918 | WP_001564043.1 | glycyl radical diol dehydratase-activating enzyme GrpN | - |
| JNN53_RS04095 () | 860918..863470 | - | 2553 | WP_000890295.1 | glycyl radical diol dehydratase GrpM | - |
| JNN53_RS04100 () | 863519..864094 | - | 576 | WP_000722279.1 | propanediol utilization system protease GrpL | - |
| JNN53_RS04105 () | 864105..864404 | - | 300 | WP_000746009.1 | propanediol utilization system shell hexameric protein GrpK | - |
| JNN53_RS04110 () | 864428..865945 | - | 1518 | WP_000997839.1 | N-succinylglutamate 5-semialdehyde dehydrogenase | VF |
| JNN53_RS04115 () | 866006..866791 | - | 786 | WP_001205499.1 | propanediol utilization microcompartment protein GrpI | - |
| JNN53_RS04120 () | 866813..867094 | - | 282 | WP_001301171.1 | propanediol utilization system shell hexameric protein GrpH | - |
| JNN53_RS04125 () | 867379..868575 | - | 1197 | WP_001362987.1 | propanediol utilization system propionate kinase GrpG | - |
| JNN53_RS04130 () | 868604..869101 | - | 498 | WP_001564042.1 | propanediol utilization system heme-binding protein GrpF | - |
| JNN53_RS04135 () | 869129..869398 | - | 270 | WP_001564041.1 | propanediol utilization microcompartment vertex protein GrpE | - |
| JNN53_RS04140 () | 869410..870114 | - | 705 | WP_000370214.1 | propanediol utilization system flavoprotein GrpD | - |
| JNN53_RS04145 () | 870119..870877 | - | 759 | WP_001332070.1 | propanediol utilization system chaperone GrpC | - |
| JNN53_RS04150 () | 870932..871618 | - | 687 | WP_001109982.1 | propanediol utilization system phosphotransacylase GrpB | - |
| JNN53_RS04155 () | 871758..872876 | - | 1119 | WP_000135343.1 | hypothetical protein | VF |
| JNN53_RS04160 () | 873233..873733 | + | 501 | Protein_817 | DNA-binding protein | - |
| JNN53_RS04165 () | 873829..874062 | + | 234 | WP_000124185.1 | hypothetical protein | - |
| JNN53_RS04170 () | 874115..874306 | - | 192 | WP_001287883.1 | DUF4222 domain-containing protein | - |
| JNN53_RS04175 () | 875027..875287 | + | 261 | Protein_820 | IS3 family transposase ISLad1 | Transposase |
| JNN53_RS04180 () | 875430..877175 | + | 1746 | WP_001564039.1 | AAA family ATPase | - |
| JNN53_RS04185 () | 877569..878009 | + | 441 | WP_001403216.1 | hypothetical protein | VF |
| JNN53_RS04190 () | 878050..878916 | + | 867 | Protein_823 | ImpA domain protein | - |
| JNN53_RS04195 () | 879033..879677 | + | 645 | WP_024196335.1 | hypothetical protein | - |
| JNN53_RS04200 () | 879818..881050 | + | 1233 | WP_001564037.1 | phosphoadenosine phosphosulfate reductase | - |
| JNN53_RS04205 () | 881035..881673 | + | 639 | WP_001564035.1 | ParB N-terminal domain-containing protein | - |
| JNN53_RS04210 () | 881752..882021 | + | 270 | WP_000226517.1 | PerC family transcriptional regulator | - |
| JNN53_RS04215 () | 882042..882686 | + | 645 | WP_106106617.1 | hypothetical protein | - |
| JNN53_RS04220 () | 882751..883074 | + | 324 | WP_001564033.1 | hypothetical protein | - |
| JNN53_RS04225 () | 883122..883913 | - | 792 | Protein_830 | ATP-dependent helicase | - |
| JNN53_RS04230 () | 883908..884297 | + | 390 | Protein_831 | IS3 family transposase | - |
| JNN53_RS04235 () | 884969..886477 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| JNN53_RS04240 () | 886567..887040 | + | 474 | Protein_833 | IS3 family transposase IS629 | Transposase |
| JNN53_RS04245 () | 887238..887495 | - | 258 | Protein_834 | IS3 family transposase IS911 | Transposase |
| JNN53_RS04250 () | 887565..887912 | - | 348 | WP_001564031.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| JNN53_RS04255 () | 888531..889224 | - | 694 | Protein_836 | IS1 family transposase IS1N | Transposase |
| JNN53_RS04260 () | 889477..890946 | + | 1470 | WP_001331566.1 | basic amino acid/polyamine antiporter | - |
| JNN53_RS04265 () | 891051..893420 | + | 2370 | WP_000671170.1 | arginine decarboxylase | - |
| JNN53_RS04270 () | 893495..894994 | + | 1500 | WP_001331567.1 | basic amino acid/polyamine antiporter | - |
| JNN53_RS04275 () | 895137..895834 | + | 698 | Protein_840 | IS1 family transposase IS1S | Transposase |
| JNN53_RS04280 () | 896301..896852 | - | 552 | WP_001447126.1 | Transcriptional regulator SlyA | VF |
| JNN53_RS04285 () | 897019..897810 | - | 792 | Protein_842 | IS3 family transposase | - |
| JNN53_RS04290 () | 897827..898524 | - | 698 | Protein_843 | IS1 family transposase IS1R | Transposase |
| JNN53_RS04295 () | 899054..900097 | - | 1044 | WP_000147018.1 | hypothetical protein | - |
| JNN53_RS04300 () | 900353..901618 | - | 1266 | WP_001218869.1 | hypothetical protein ; Integrase | Integrase |
| JNN53_RS04310 () | 901997..902704 | - | 708 | WP_000234532.1 | DUF554 domain-containing protein | - |
| JNN53_RS04315 () | 903096..905231 | + | 2136 | WP_001564026.1 | ornithine decarboxylase | - |
| JNN53_RS04320 () | 905280..906536 | - | 1257 | WP_001049791.1 | nucleoside permease NupG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|