MGE detailed information
MGE type: Prophage MGE length: 39897 bp
Accession: NZ_CP068814 Location: 2203180..2243076 Organism: Escherichia coli strain RIVM_C028613 Replicon: chromosome
Accession: NZ_CP068814 Location: 2203180..2243076 Organism: Escherichia coli strain RIVM_C028613 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN56_RS10370 () | 2199904..2200356 | + | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| JNN56_RS10375 () | 2200385..2201125 | + | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| JNN56_RS10380 () | 2201160..2201681 | + | 522 | WP_001551239.1 | crossover junction endodeoxyribonuclease RuvC | - |
| JNN56_RS10385 () | 2201683..2202285 | - | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| JNN56_RS10390 () | 2202356..2202421 | + | 66 | WP_010723105.1 | stress response small protein YobI | - |
| JNN56_RS10395 () | 2202560..2203171 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| JNN56_RS10400 () | 2203180..2204190 | + | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| JNN56_RS10405 () | 2204340..2205125 | - | 786 | WP_000571479.1 | hypothetical protein | VF |
| JNN56_RS10410 () | 2205122..2205877 | - | 756 | WP_000202996.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| JNN56_RS10415 () | 2205956..2206888 | + | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| JNN56_RS10420 () | 2206904..2208226 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| JNN56_RS10425 () | 2208346..2209317 | + | 972 | WP_001551238.1 | TVP38/TMEM64 family inner membrane protein YdjZ | VF |
| JNN56_RS10430 () | 2209449..2210891 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| JNN56_RS10435 () | 2211019..2211888 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| JNN56_RS10440 () | 2212226..2213701 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| JNN56_RS10445 () | 2213936..2215747 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| JNN56_RS10450 () | 2215784..2216425 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| JNN56_RS10455 () | 2216480..2217658 | - | 1179 | WP_001551236.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JNN56_RS10460 () | 2217792..2218082 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| JNN56_RS10465 () | 2218149..2218505 | + | 357 | WP_001295500.1 | protein YebF | - |
| JNN56_RS10470 () | 2218832..2219491 | + | 660 | WP_000024733.1 | tellurite resistance TerB family protein | - |
| JNN56_RS10475 () | 2219655..2220824 | - | 1170 | WP_001551234.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| JNN56_RS10480 () | 2220881..2221306 | + | 426 | WP_000064873.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| JNN56_RS10485 () | 2221463..2223523 | + | 2061 | WP_001551233.1 | oligopeptidase B | - |
| JNN56_RS10490 () | 2223520..2224182 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN56_RS10495 () | 2224206..2224862 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN56_RS10500 () | 2224964..2225194 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN56_RS10505 () | 2225333..2225707 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN56_RS10510 () | 2225711..2226583 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN56_RS10515 () | 2226596..2226937 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - () | 2226965..2227236 | - | 272 | - | - | Antitoxin Detail |
| - () | 2227095..2227198 | + | 104 | - | - | Toxin Detail |
| JNN56_RS10520 () | 2227333..2227989 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN56_RS10525 () | 2227990..2228181 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN56_RS10530 () | 2228286..2228522 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN56_RS10535 () | 2228640..2230079 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JNN56_RS10540 () | 2230159..2232792 | - | 2634 | WP_001306757.1 | Inner membrane protein YdjM | VF |
| JNN56_RS10545 () | 2232761..2234044 | - | 1284 | WP_001316436.1 | membrane integrity lipid transport subunit YebS | - |
| JNN56_RS10550 () | 2234174..2234671 | + | 498 | WP_001043876.1 | L-methionine (R)-S-oxide reductase | - |
| JNN56_RS10555 () | 2234768..2235466 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| JNN56_RS10560 () | 2235486..2237534 | + | 2049 | WP_001055785.1 | carboxy terminal-processing peptidase | - |
| JNN56_RS10565 () | 2237726..2238607 | + | 882 | WP_000984517.1 | protease HtpX | - |
| JNN56_RS10570 () | 2238653..2240026 | - | 1374 | WP_001551227.1 | MFS transporter | - |
| JNN56_RS10575 () | 2240203..2240994 | + | 792 | WP_001262179.1 | DNA-binding transcriptional regulator KdgR | - |
| JNN56_RS10580 () | 2241138..2241377 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| JNN56_RS10585 () | 2241536..2241679 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| JNN56_RS10590 () | 2241754..2242041 | + | 288 | WP_001006855.1 | YebO family protein | - |
| JNN56_RS10595 () | 2242711..2242854 | + | 144 | WP_001295496.1 | YobF family protein | - |
| JNN56_RS10600 () | 2242867..2243076 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| JNN56_RS10605 () | 2243242..2244051 | + | 810 | WP_000010109.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| JNN56_RS10610 () | 2244048..2244614 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| JNN56_RS10615 () | 2245043..2245501 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| JNN56_RS10620 () | 2245556..2246407 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| JNN56_RS10625 () | 2246420..2247220 | - | 801 | WP_000406928.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|