MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 71764 bp
Accession: NZ_CP068626 Location: 1..71764 Organism: Vibrio parahaemolyticus strain LH24 Replicon: plasmid pLH24-3
Accession: NZ_CP068626 Location: 1..71764 Organism: Vibrio parahaemolyticus strain LH24 Replicon: plasmid pLH24-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHS83_RS25115 (JHS83_25080) | 406..901 | + | 496 | Protein_1 | Type IV secretion system protein virB10 | VF |
| JHS83_RS25120 (JHS83_25085) | 902..1919 | + | 1018 | Protein_2 | P-type DNA transfer ATPase VirB11 | - |
| JHS83_RS25555 | 2684..3103 | + | 420 | WP_272904552.1 | type IV secretory system conjugative DNA transfer family protein | - |
| JHS83_RS25125 (JHS83_25090) | 3043..4101 | + | 1059 | WP_272904553.1 | Protein VirD4 | VF |
| JHS83_RS25130 (JHS83_25095) | 4122..4265 | + | 144 | WP_180926494.1 | hypothetical protein | - |
| JHS83_RS25135 (JHS83_25100) | 4381..6381 | + | 2001 | WP_140391870.1 | DNA topoisomerase III | - |
| JHS83_RS25140 (JHS83_25105) | 6438..6989 | + | 552 | WP_140391871.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| JHS83_RS25145 (JHS83_25110) | 6992..7408 | + | 417 | WP_237305255.1 | conjugal transfer protein | - |
| JHS83_RS25150 (JHS83_25115) | 7439..7789 | + | 351 | WP_140391872.1 | hypothetical protein | Relaxase |
| JHS83_RS25155 (JHS83_25120) | 7779..10910 | + | 3132 | WP_140391873.1 | relaxase | - |
| JHS83_RS25160 (JHS83_25125) | 11227..11754 | + | 528 | WP_140391874.1 | hypothetical protein | - |
| JHS83_RS25165 (JHS83_25130) | 11754..12446 | + | 693 | WP_140391875.1 | StbB family protein | - |
| JHS83_RS25170 (JHS83_25135) | 12572..12970 | + | 399 | WP_237305256.1 | hypothetical protein | - |
| JHS83_RS25175 (JHS83_25140) | 12982..13716 | + | 735 | WP_140391876.1 | Type IV secretion system protein virB5 | VF |
| JHS83_RS25180 (JHS83_25145) | 13716..14741 | + | 1026 | WP_140391877.1 | type IV secretion system protein | - |
| JHS83_RS25185 (JHS83_25150) | 14780..15052 | - | 273 | WP_140391878.1 | hypothetical protein | - |
| JHS83_RS25190 (JHS83_25155) | 15133..15579 | - | 447 | WP_140391879.1 | hypothetical protein | - |
| JHS83_RS25195 (JHS83_25160) | 15595..16023 | - | 429 | WP_140391880.1 | hypothetical protein | - |
| JHS83_RS25200 (JHS83_25165) | 16082..16294 | - | 213 | WP_140391881.1 | hypothetical protein | - |
| JHS83_RS25205 | 17117..18811 | - | 1695 | WP_219628325.1 | DUF3560 domain-containing protein | - |
| JHS83_RS25210 (JHS83_25180) | 19409..19993 | + | 585 | WP_140391882.1 | DUF2913 family protein | - |
| JHS83_RS25215 (JHS83_25185) | 20011..20736 | + | 726 | WP_140391883.1 | GNAT family N-acetyltransferase | - |
| JHS83_RS25220 (JHS83_25190) | 20743..21006 | - | 264 | WP_140391884.1 | hypothetical protein | - |
| JHS83_RS25225 (JHS83_25195) | 21037..21261 | - | 225 | WP_140391885.1 | hypothetical protein | - |
| JHS83_RS25230 (JHS83_25200) | 21273..21641 | - | 369 | WP_140391886.1 | DNA-binding protein | - |
| JHS83_RS25235 (JHS83_25205) | 21654..21953 | - | 300 | WP_140391887.1 | type II toxin-antitoxin system HigB family toxin | - |
| JHS83_RS25240 (JHS83_25210) | 22424..24004 | - | 1581 | WP_140391888.1 | hypothetical protein | - |
| JHS83_RS25245 (JHS83_25215) | 24509..24760 | + | 252 | Protein_28 | hypothetical protein | - |
| JHS83_RS25250 (JHS83_25220) | 24763..25050 | + | 288 | WP_140220084.1 | NadS family protein | - |
| JHS83_RS25255 | 25378..25500 | - | 123 | Protein_30 | IS6 family transposase | - |
| JHS83_RS25260 (JHS83_25225) | 25776..26876 | + | 1101 | WP_140220086.1 | Outer membrane protein A | VF |
| JHS83_RS25265 (JHS83_25230) | 26893..30276 | + | 3384 | WP_140220088.1 | Ig-like domain-containing protein | - |
| JHS83_RS25270 (JHS83_25235) | 31209..31418 | - | 210 | Protein_33 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JHS83_RS25275 (JHS83_25240) | 31446..32127 | - | 682 | Protein_34 | IS6 family transposase ISSba18 | Transposase |
| JHS83_RS25280 (JHS83_25245) | 32148..32405 | - | 258 | WP_237305257.1 | transposase zinc-binding domain-containing protein | - |
| JHS83_RS25285 | 33116..33214 | - | 99 | Protein_36 | IS5/IS1182 family transposase | - |
| JHS83_RS25290 (JHS83_25250) | 33311..33913 | - | 603 | WP_176133577.1 | transglutaminase-like cysteine peptidase | - |
| JHS83_RS25295 (JHS83_25255) | 34344..35363 | - | 1020 | WP_193291339.1 | IS110 family transposase ISSpe2 | Transposase |
| JHS83_RS25300 (JHS83_25260) | 35571..35720 | + | 150 | WP_176133574.1 | hypothetical protein | - |
| JHS83_RS25305 (JHS83_25265) | 35765..36449 | + | 685 | Protein_40 | IS6 family transposase ISSba18 | Transposase |
| JHS83_RS25310 (JHS83_25270) | 36734..37894 | - | 1161 | WP_078231292.1 | MalY/PatB family protein | - |
| JHS83_RS25315 (JHS83_25275) | 37907..39382 | - | 1476 | WP_078231291.1 | Na+/H+ antiporter NhaC | - |
| JHS83_RS25320 (JHS83_25280) | 39520..40530 | - | 1011 | WP_078231290.1 | LacI family DNA-binding transcriptional regulator | - |
| JHS83_RS25325 (JHS83_25285) | 40653..41304 | - | 652 | Protein_44 | IS6 family transposase ISSba18 | Transposase |
| JHS83_RS25330 (JHS83_25290) | 41412..45266 | - | 3855 | WP_180926510.1 | Ig-like domain-containing protein | - |
| JHS83_RS25335 (JHS83_25295) | 45408..45956 | - | 549 | WP_140392098.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| JHS83_RS25340 (JHS83_25300) | 46114..47979 | + | 1866 | Protein_47 | Tn3 family transposase ISEc63 | Transposase |
| JHS83_RS25345 (JHS83_25305) | 47989..48189 | - | 201 | Protein_48 | recombinase family protein | - |
| JHS83_RS25350 (JHS83_25310) | 48345..48557 | + | 213 | WP_140220072.1 | hypothetical protein | - |
| JHS83_RS25355 (JHS83_25315) | 48637..49071 | + | 435 | WP_140220074.1 | hypothetical protein | - |
| JHS83_RS25360 (JHS83_25320) | 49234..50052 | - | 819 | Protein_51 | IS3 family transposase ISAs9 | Transposase |
| JHS83_RS25365 (JHS83_25325) | 50122..50805 | + | 684 | WP_140220078.1 | IS6 family transposase ISSba18 | Transposase |
| JHS83_RS25370 (JHS83_25330) | 50835..51104 | - | 270 | WP_140220080.1 | IS110 family transposase ISMlo3 | Transposase |
| JHS83_RS25375 (JHS83_25335) | 51622..51891 | - | 270 | WP_140220082.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| JHS83_RS25380 (JHS83_25340) | 51884..52138 | - | 255 | WP_005526636.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| JHS83_RS25385 (JHS83_25345) | 52471..53046 | + | 576 | Protein_56 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| JHS83_RS25390 (JHS83_25350) | 53076..56072 | - | 2997 | WP_140391851.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| JHS83_RS25395 (JHS83_25355) | 56076..56696 | - | 621 | WP_140391890.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| JHS83_RS25400 (JHS83_25360) | 56891..57757 | - | 867 | WP_140391852.1 | hypothetical protein | - |
| JHS83_RS25405 (JHS83_25365) | 57869..58219 | + | 351 | Protein_60 | IS91 family transposase ISVa3 | Transposase |
| JHS83_RS25410 (JHS83_25370) | 58651..59469 | + | 819 | WP_140391853.1 | hypothetical protein | - |
| JHS83_RS25415 (JHS83_25375) | 59783..60304 | + | 522 | WP_025789149.1 | outer membrane beta-barrel protein | - |
| JHS83_RS25420 (JHS83_25380) | 60435..60644 | - | 210 | WP_237305253.1 | hypothetical protein | - |
| JHS83_RS25425 (JHS83_25385) | 60978..61307 | - | 330 | WP_140303232.1 | hypothetical protein | - |
| JHS83_RS25430 (JHS83_25390) | 61307..61846 | - | 540 | WP_023625103.1 | ParA family protein | - |
| JHS83_RS25435 (JHS83_25395) | 62134..62316 | + | 183 | WP_140391856.1 | hypothetical protein | - |
| JHS83_RS25440 (JHS83_25400) | 62316..62780 | + | 465 | WP_023625101.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| JHS83_RS25445 (JHS83_25405) | 63513..64412 | - | 900 | WP_140391857.1 | hypothetical protein | - |
| JHS83_RS25450 (JHS83_25410) | 64840..65472 | - | 633 | WP_140391858.1 | IS21 family transposase ISVapa2 | Transposase |
| JHS83_RS25455 (JHS83_25415) | 65587..65733 | - | 147 | WP_180926493.1 | hypothetical protein | - |
| JHS83_RS25460 (JHS83_25420) | 65870..66364 | + | 495 | WP_140391859.1 | hypothetical protein | - |
| JHS83_RS25465 (JHS83_25425) | 66386..66571 | + | 186 | WP_140391860.1 | TraY domain-containing protein | - |
| JHS83_RS25470 (JHS83_25430) | 66698..66997 | + | 300 | WP_140391861.1 | Type IV secretion system protein PtlA | VF |
| JHS83_RS25475 (JHS83_25435) | 67049..67354 | + | 306 | WP_140391862.1 | Type IV secretion system protein virB3 | VF |
| JHS83_RS25480 (JHS83_25440) | 67358..69796 | + | 2439 | WP_140391863.1 | Type IV secretion system protein virB4 | VF |
| JHS83_RS25560 | 69800..69922 | + | 123 | WP_256896387.1 | hypothetical protein | - |
| JHS83_RS25485 (JHS83_25445) | 69909..70598 | + | 690 | WP_140391864.1 | Type IV secretion system protein virB8 | VF |
| JHS83_RS25490 (JHS83_25450) | 70611..71492 | + | 882 | WP_140391865.1 | Type IV secretion system protein virB9 | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|