MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 132701 bp
Accession: NZ_CP068416 Location: 556832..689532 Organism: Lacticaseibacillus paracasei subsp. tolerans strain S-NB Replicon: chromosome
Accession: NZ_CP068416 Location: 556832..689532 Organism: Lacticaseibacillus paracasei subsp. tolerans strain S-NB Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JK384_RS02590 () | 552794..553693 | + | 900 | WP_003577889.1 | shikimate dehydrogenase | - |
| JK384_RS02595 () | 554138..554953 | + | 816 | WP_003573694.1 | homoserine O-succinyltransferase | - |
| JK384_RS02600 () | 554987..555916 | + | 930 | WP_003577893.1 | cysteine synthase A | - |
| JK384_RS02605 () | 556106..556651 | - | 546 | WP_003577895.1 | hypothetical protein | - |
| JK384_RS02615 () | 556972..558141 | - | 1170 | WP_003569067.1 | IS91 family transposase ISCARN110 | Transposase |
| JK384_RS02620 () | 558254..558514 | - | 261 | WP_003606553.1 | hypothetical protein | - |
| JK384_RS02625 () | 558545..559465 | - | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| JK384_RS02630 () | 559658..560278 | + | 621 | WP_003586911.1 | hypothetical protein | - |
| JK384_RS02635 () | 560262..560441 | - | 180 | WP_016365098.1 | hypothetical protein | - |
| JK384_RS02640 () | 560691..561398 | - | 708 | WP_003586913.1 | zinc ribbon domain-containing protein | - |
| JK384_RS02645 () | 561557..561979 | - | 423 | WP_003572182.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JK384_RS02650 () | 561972..562325 | - | 354 | WP_003572184.1 | helix-turn-helix transcriptional regulator | - |
| JK384_RS02655 () | 562569..562817 | + | 249 | WP_003574003.1 | hypothetical protein | - |
| JK384_RS02660 () | 562859..563059 | + | 201 | WP_003572187.1 | hypothetical protein | - |
| JK384_RS02665 () | 563030..563863 | - | 834 | WP_003586916.1 | TIGR02391 family protein | - |
| JK384_RS02670 () | 563924..564682 | + | 759 | WP_010493122.1 | ORF6C domain-containing protein | - |
| JK384_RS02675 () | 564683..564862 | + | 180 | WP_003572193.1 | hypothetical protein | - |
| JK384_RS02680 () | 564855..565106 | - | 252 | WP_003606636.1 | DUF1883 domain-containing protein | - |
| JK384_RS02685 () | 565172..565528 | + | 357 | WP_003586919.1 | DUF771 domain-containing protein | - |
| JK384_RS02690 () | 565613..565816 | + | 204 | WP_003572201.1 | hypothetical protein | - |
| JK384_RS02695 () | 565799..566344 | - | 546 | WP_003586921.1 | hypothetical protein | - |
| JK384_RS02700 () | 566525..566839 | + | 315 | WP_003661649.1 | hypothetical protein | - |
| JK384_RS02705 () | 566832..567578 | + | 747 | WP_003586926.1 | DnaD domain protein | - |
| JK384_RS02710 () | 567593..568417 | + | 825 | WP_003574014.1 | ATP-binding protein | - |
| JK384_RS02715 () | 568417..568935 | + | 519 | WP_003574016.1 | exonuclease domain-containing protein | - |
| JK384_RS02720 () | 568982..569404 | + | 423 | WP_003564822.1 | hypothetical protein | - |
| JK384_RS02725 () | 569406..570143 | + | 738 | WP_003572217.1 | hypothetical protein | - |
| JK384_RS02730 () | 570155..570442 | + | 288 | WP_010493149.1 | hypothetical protein | - |
| JK384_RS02735 () | 570512..570844 | + | 333 | WP_003586929.1 | hypothetical protein | - |
| JK384_RS02740 () | 571359..571802 | + | 444 | WP_010493154.1 | autolysin regulatory protein arpU | - |
| JK384_RS02745 () | 572315..572968 | + | 654 | WP_003586931.1 | hypothetical protein | - |
| JK384_RS02750 () | 573219..574215 | + | 997 | Protein_545 | IS30 family transposase ISApl1 | Transposase |
| JK384_RS02755 () | 574411..574629 | - | 219 | WP_003573729.1 | CsbD family protein | - |
| JK384_RS02760 () | 575052..576268 | + | 1217 | Protein_547 | hypothetical protein | - |
| JK384_RS02765 () | 576255..576590 | + | 336 | WP_010493173.1 | ribonucleoside-diphosphate reductase | - |
| JK384_RS02770 () | 576752..577084 | + | 333 | WP_076626284.1 | IS3 family transposase IS1163 | Transposase |
| JK384_RS02775 () | 577114..577842 | + | 729 | WP_003582147.1 | IS3 family transposase ISSth1b | Transposase |
| JK384_RS02780 () | 577776..578717 | + | 942 | WP_014951815.1 | IS3 family transposase ISSth1b | Transposase |
| JK384_RS02785 () | 578763..579626 | + | 864 | WP_099973802.1 | IS3 family transposase IS1520 | Transposase |
| JK384_RS02790 () | 580308..580586 | + | 279 | WP_003586951.1 | hypothetical protein | - |
| JK384_RS02795 () | 580598..580864 | + | 267 | WP_014566886.1 | hypothetical protein | - |
| JK384_RS02800 () | 580888..582471 | + | 1584 | WP_003586954.1 | Pesticidal crystal protein Cry22Aa | VF |
| JK384_RS02805 () | 582490..582966 | + | 477 | WP_003586956.1 | PcfB family protein | - |
| JK384_RS02810 () | 582966..584867 | + | 1902 | WP_003606869.1 | type IV secretory system conjugative DNA transfer family protein | - |
| JK384_RS02815 () | 584885..585091 | + | 207 | WP_003571730.1 | hypothetical protein | - |
| JK384_RS02820 () | 585111..585944 | + | 834 | WP_003606870.1 | hypothetical protein | - |
| JK384_RS02825 () | 585962..586333 | + | 372 | WP_016363322.1 | PrgI family protein | - |
| JK384_RS02830 () | 586281..588737 | + | 2457 | WP_003586965.1 | ATP-binding protein | - |
| JK384_RS02835 () | 588727..591204 | + | 2478 | WP_003586967.1 | CHAP domain-containing protein | - |
| JK384_RS02840 () | 591218..591742 | + | 525 | WP_003586970.1 | hypothetical protein | - |
| JK384_RS02845 () | 591760..591990 | + | 231 | WP_003586972.1 | hypothetical protein | - |
| JK384_RS02850 () | 592026..593171 | + | 1146 | WP_003586973.1 | hypothetical protein | - |
| JK384_RS02855 () | 593189..594163 | + | 975 | WP_016363319.1 | DNA primase | - |
| JK384_RS02860 () | 594251..594526 | + | 276 | WP_003589454.1 | hypothetical protein | - |
| JK384_RS02865 () | 594773..595174 | + | 402 | WP_016363316.1 | MobC family plasmid mobilization relaxosome protein | - |
| JK384_RS02870 () | 595146..597353 | + | 2208 | WP_003606873.1 | relaxase/mobilization nuclease domain-containing protein | - |
| JK384_RS02875 () | 597398..598789 | + | 1392 | WP_003589449.1 | DUF3991 domain-containing protein | - |
| JK384_RS02885 () | 599966..600037 | + | 72 | Protein_572 | LtrC-like protein | - |
| JK384_RS02890 () | 600242..600433 | - | 192 | WP_080543852.1 | transposase | - |
| JK384_RS02895 () | 600621..601379 | + | 759 | WP_003606711.1 | MurR/RpiR family transcriptional regulator | - |
| JK384_RS02900 () | 601497..603170 | + | 1674 | WP_003587163.1 | PTS transporter subunit EIIC | - |
| JK384_RS02905 () | 603183..603953 | + | 771 | WP_003587161.1 | HAD-IIB family hydrolase | - |
| JK384_RS02910 () | 603968..604453 | + | 486 | WP_016363706.1 | PTS glucose transporter subunit IIA | - |
| JK384_RS02915 () | 604596..605383 | + | 788 | WP_099973804.1 | IS5 family transposase ISCaa8 | Transposase |
| JK384_RS02920 () | 605438..605968 | + | 531 | WP_003606689.1 | hypothetical protein | - |
| JK384_RS02925 () | 605983..606942 | + | 960 | WP_003587152.1 | D-2-hydroxyacid dehydrogenase | - |
| JK384_RS02930 () | 607060..607446 | - | 387 | WP_003587151.1 | hypothetical protein | - |
| JK384_RS02935 () | 607439..607759 | - | 321 | WP_016363695.1 | hypothetical protein | - |
| JK384_RS02940 () | 607752..609059 | - | 1308 | WP_003587146.1 | Y-family DNA polymerase | - |
| JK384_RS02945 () | 609578..610837 | - | 1260 | WP_003606688.1 | restriction endonuclease subunit S | - |
| JK384_RS02950 () | 610834..612450 | - | 1617 | WP_003587143.1 | type I restriction-modification system subunit M | - |
| JK384_RS02955 () | 612464..615631 | - | 3168 | WP_003606687.1 | type I restriction endonuclease subunit R | - |
| JK384_RS02960 () | 615766..616680 | + | 915 | WP_003587138.1 | hypothetical protein | - |
| JK384_RS02965 () | 617195..618250 | + | 1056 | Protein_588 | IS30 family transposase ISCth3 | Transposase |
| JK384_RS02970 () | 618507..619229 | + | 723 | WP_003587133.1 | nitroreductase family protein | - |
| JK384_RS02975 () | 619331..619519 | + | 189 | WP_003587131.1 | type I toxin-antitoxin system Fst family toxin | - |
| JK384_RS02980 () | 619606..620190 | + | 585 | WP_003587130.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| JK384_RS02985 () | 620277..621440 | + | 1164 | WP_003606682.1 | PrsW family intramembrane metalloprotease | - |
| JK384_RS02990 () | 621600..621992 | - | 393 | WP_003587125.1 | hypothetical protein | - |
| JK384_RS02995 () | 622048..622299 | + | 252 | WP_003586983.1 | IS3 family transposase IS153 | Transposase |
| JK384_RS03000 () | 622353..623195 | + | 843 | WP_029327644.1 | IS3 family transposase ISBce13 | Transposase |
| JK384_RS03005 () | 623356..623817 | - | 462 | Protein_596 | IS3 family transposase IS1223 | Transposase |
| JK384_RS03010 () | 623830..624093 | - | 264 | WP_003587109.1 | hypothetical protein | - |
| JK384_RS03015 () | 624153..626975 | - | 2823 | WP_003587111.1 | cation-transporting P-type ATPase | - |
| JK384_RS03020 () | 627284..628071 | + | 788 | WP_099973805.1 | IS5 family transposase ISCaa8 | Transposase |
| JK384_RS03025 () | 628068..628229 | - | 162 | WP_016363761.1 | hypothetical protein | - |
| JK384_RS03030 () | 628588..629175 | - | 588 | WP_003586668.1 | hypothetical protein ; Integrase | Integrase |
| JK384_RS03035 () | 629252..629530 | + | 279 | WP_003586674.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| JK384_RS03040 () | 629530..629904 | + | 375 | WP_003586676.1 | type II toxin-antitoxin system YafQ family toxin | - |
| JK384_RS03045 () | 630174..631589 | - | 1416 | WP_016365202.1 | IS5 family transposase ISLca2 | Transposase |
| JK384_RS03050 () | 631998..632465 | + | 468 | WP_003587210.1 | DNA starvation/stationary phase protection protein | - |
| JK384_RS03055 () | 632712..633455 | + | 744 | WP_003587212.1 | ABC transporter ATP-binding protein | - |
| JK384_RS03060 () | 633433..634680 | + | 1248 | WP_010620835.1 | ABC transporter permease | - |
| JK384_RS03065 () | 634685..635356 | + | 672 | WP_003587215.1 | TetR/AcrR family transcriptional regulator | - |
| JK384_RS03070 () | 635460..636197 | - | 738 | Protein_609 | nicotinate phosphoribosyltransferase | - |
| JK384_RS03075 () | 636260..636705 | + | 446 | Protein_610 | IS5 family transposase ISCARN82 | Transposase |
| JK384_RS03080 () | 636769..637786 | + | 1018 | Protein_611 | IS30 family transposase ISSag3 | Transposase |
| JK384_RS03085 () | 637907..638455 | - | 549 | WP_003582473.1 | DNA-binding protein | - |
| JK384_RS03090 () | 638465..638686 | - | 222 | WP_003582479.1 | cation transporter | - |
| JK384_RS03095 () | 638728..640626 | - | 1899 | WP_016363699.1 | heavy metal translocating P-type ATPase | - |
| JK384_RS03100 () | 640861..641163 | - | 303 | Protein_615 | IS5 family transposase ISLrh3 | Transposase |
| JK384_RS03110 () | 642240..642671 | + | 432 | WP_003607154.1 | CopY/TcrY family copper transport repressor | - |
| JK384_RS03115 () | 642922..645189 | + | 2268 | WP_003589066.1 | copper-translocating P-type ATPase | - |
| JK384_RS03120 () | 645264..645590 | - | 327 | Protein_619 | MFS transporter | - |
| JK384_RS03125 () | 645612..645901 | - | 290 | Protein_620 | IS5 family transposase ISCARN82 | Transposase |
| JK384_RS03130 () | 645961..646182 | - | 222 | Protein_621 | IS3 family transposase IS153 | Transposase |
| JK384_RS03135 () | 646379..647911 | + | 1533 | WP_003606758.1 | ABC transporter permease/substrate-binding protein | - |
| JK384_RS03140 () | 647911..648849 | + | 939 | WP_003606756.1 | Carnitine transport ATP-binding protein OpuCA | VF |
| JK384_RS03145 () | 649079..650140 | + | 1062 | WP_003589055.1 | ABC transporter permease | - |
| JK384_RS03150 () | 650145..650816 | + | 672 | WP_003606755.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| JK384_RS03155 () | 650923..651606 | + | 684 | WP_049169626.1 | IS6 family transposase ISBth20 | Transposase |
| JK384_RS03160 () | 651849..652277 | - | 429 | WP_003586786.1 | hypothetical protein | - |
| JK384_RS03165 () | 652466..652768 | - | 303 | Protein_628 | IS30 family transposase | - |
| JK384_RS03170 () | 652880..653800 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| JK384_RS03175 () | 653806..654186 | - | 381 | Protein_630 | IS30 family transposase | - |
| JK384_RS03180 () | 654323..655738 | + | 1416 | WP_003600251.1 | IS5 family transposase ISLca2 | Transposase |
| JK384_RS03185 () | 655904..658075 | - | 2172 | WP_003607130.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| JK384_RS03190 () | 658247..659236 | + | 990 | WP_003586769.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| JK384_RS03195 () | 659233..659718 | + | 486 | WP_003586772.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| JK384_RS03200 () | 660450..660692 | + | 243 | WP_016363783.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| JK384_RS03205 () | 660685..660966 | + | 282 | WP_003573774.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| JK384_RS03210 () | 661166..661564 | + | 399 | WP_003586778.1 | DUF1722 domain-containing protein | - |
| JK384_RS03215 () | 661809..662918 | - | 1110 | WP_003607129.1 | hypothetical protein | - |
| JK384_RS03220 () | 662920..664350 | - | 1431 | WP_003607128.1 | hypothetical protein | - |
| JK384_RS03225 () | 664540..665223 | + | 684 | WP_003586785.1 | IS6 family transposase ISBth20 | Transposase |
| JK384_RS03230 () | 665556..668324 | + | 2769 | WP_003607349.1 | CRISPR-associated helicase/endonuclease Cas3 | - |
| JK384_RS03235 () | 668305..670014 | + | 1710 | WP_003586647.1 | type I-E CRISPR-associated protein Cse1/CasA | - |
| JK384_RS03240 () | 670011..670613 | + | 603 | WP_003586648.1 | type I-E CRISPR-associated protein Cse2/CasB | - |
| JK384_RS03245 () | 670606..671691 | + | 1086 | WP_003586650.1 | type I-E CRISPR-associated protein Cas7/Cse4/CasC | - |
| JK384_RS03250 () | 671663..672373 | + | 711 | WP_003586652.1 | type I-E CRISPR-associated protein Cas5/CasD | - |
| JK384_RS03255 () | 672389..673036 | + | 648 | WP_003586654.1 | type I-E CRISPR-associated protein Cas6/Cse3/CasE | - |
| JK384_RS03260 () | 673041..673988 | + | 948 | WP_003586656.1 | type I-E CRISPR-associated endonuclease Cas1 | - |
| JK384_RS03265 () | 673985..674890 | + | 906 | WP_003586658.1 | type I-E CRISPR-associated endoribonuclease Cas2 | - |
| JK384_RS03270 () | 676938..677621 | + | 684 | WP_002816607.1 | IS6 family transposase ISBth20 | Transposase |
| JK384_RS03275 () | 677725..679053 | + | 1329 | WP_003587117.1 | glycoside-pentoside-hexuronide (GPH):cation symporter | - |
| JK384_RS03280 () | 679254..679811 | + | 558 | WP_003567312.1 | hypothetical protein | - |
| JK384_RS03285 () | 680089..680328 | + | 240 | Protein_652 | hypothetical protein | - |
| JK384_RS03290 () | 680851..680852 | - | 2 | WP_099973807.1 | IS5 family transposase ISCARN82 | Transposase |
| JK384_RS03295 () | 681178..681561 | - | 384 | Protein_654 | ISLre2 family transposase ISLrh4 | Transposase |
| JK384_RS03300 () | 681887..682135 | - | 249 | WP_003593233.1 | DUF1722 domain-containing protein | - |
| JK384_RS03305 () | 682329..682844 | - | 516 | Protein_656 | anion permease | - |
| JK384_RS03310 () | 682954..683874 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| JK384_RS03315 () | 683896..684161 | - | 266 | Protein_658 | IS3 family transposase IS153 | Transposase |
| JK384_RS03320 () | 684346..684828 | + | 483 | WP_003589537.1 | PTS glucose transporter subunit IIA | - |
| JK384_RS03325 () | 684889..685218 | + | 330 | WP_080596909.1 | IS3 family transposase IS1163 | Transposase |
| JK384_RS03330 () | 685228..686169 | - | 942 | WP_014951815.1 | IS3 family transposase ISSth1b | Transposase |
| JK384_RS03335 () | 686103..686831 | - | 729 | WP_003582147.1 | IS3 family transposase ISSth1b | Transposase |
| JK384_RS03340 () | 686900..687763 | + | 864 | WP_099973802.1 | IS3 family transposase IS1520 | Transposase |
| JK384_RS03345 () | 687923..688894 | + | 972 | WP_032771614.1 | LysM peptidoglycan-binding domain-containing protein | - |
| JK384_RS03350 () | 689578..690366 | + | 789 | WP_003587240.1 | hypothetical protein | - |
| JK384_RS03355 () | 690452..691588 | - | 1137 | WP_003587241.1 | PLP-dependent transferase | - |
| JK384_RS03360 () | 691690..692502 | - | 813 | WP_003607400.1 | transporter substrate-binding domain-containing protein | - |
| JK384_RS03365 () | 692534..693247 | - | 714 | WP_003573812.1 | amino acid ABC transporter permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|