MGE detailed information
MGE type: Conjugative plasmid MGE length: 67545 bp
Accession: NZ_CP068280 Location: 1..67545 Organism: Escherichia coli strain CY708 Replicon: plasmid pCY708
Accession: NZ_CP068280 Location: 1..67545 Organism: Escherichia coli strain CY708 Replicon: plasmid pCY708
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJW05_RS23015 (14) | 14..133 | + | 120 | WP_014106970.1 | hypothetical protein | - |
| JJW05_RS22475 (158) | 158..445 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| JJW05_RS22480 (564) | 564..1385 | + | 822 | WP_001234417.1 | DUF932 domain-containing protein | - |
| JJW05_RS22485 (1681) | 1681..2271 | - | 591 | WP_001375132.1 | hypothetical protein | VF |
| JJW05_RS22490 (2604) | 2604..2987 | + | 384 | WP_001151527.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| JJW05_RS22495 (3174) | 3174..3863 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| JJW05_RS22500 (3956) | 3956..4357 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| JJW05_RS22505 (4390) | 4390..4755 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| JJW05_RS22510 (4770) | 4770..5081 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| JJW05_RS22515 (5103) | 5103..5669 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| JJW05_RS22520 (5656) | 5656..6384 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| JJW05_RS22525 (6384) | 6384..7811 | + | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| JJW05_RS22530 (7801) | 7801..8391 | + | 591 | WP_000002792.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| JJW05_RS22535 (8378) | 8378..8575 | + | 198 | WP_001443030.1 | conjugal transfer protein TrbD | - |
| JJW05_RS22540 (8587) | 8587..8838 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| JJW05_RS22545 (8835) | 8835..9350 | + | 516 | WP_000809843.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JJW05_RS22550 (9485) | 9485..9706 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| JJW05_RS22555 (9866) | 9866..12493 | + | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| JJW05_RS22560 (12490) | 12490..12876 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| JJW05_RS22565 (12873) | 12873..13505 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| JJW05_RS22570 (13502) | 13502..14494 | + | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| JJW05_RS22575 (14503) | 14503..15141 | + | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JJW05_RS22580 (15138) | 15138..16946 | + | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JJW05_RS22585 (16973) | 16973..17230 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| JJW05_RS22590 (17223) | 17223..17966 | + | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JJW05_RS22595 (17982) | 17982..18329 | + | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| JJW05_RS22600 (18331) | 18331..18645 | - | 315 | WP_000415566.1 | protein ArtA | - |
| JJW05_RS22605 (18726) | 18726..19010 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JJW05_RS22610 (18997) | 18997..19542 | + | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JJW05_RS22615 (19472) | 19472..19813 | + | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| JJW05_RS22620 (19800) | 19800..20180 | + | 381 | WP_001366201.1 | F-type conjugal transfer protein TrbF | - |
| JJW05_RS22625 (20180) | 20180..21553 | + | 1374 | WP_021553026.1 | conjugal transfer pilus assembly protein TraH | - |
| JJW05_RS22630 (21550) | 21550..24366 | + | 2817 | WP_001007055.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| JJW05_RS22635 (24399) | 24399..24920 | + | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| JJW05_RS22640 (24945) | 24945..25676 | + | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| JJW05_RS22645 (25929) | 25929..28082 | + | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| JJW05_RS22650 (28091) | 28091..28489 | - | 399 | WP_000911324.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| JJW05_RS22655 (28489) | 28489..28716 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| JJW05_RS22660 (28798) | 28798..34068 | + | 5271 | WP_000987005.1 | Multifunctional conjugation protein TraI | Relaxase |
| JJW05_RS22665 (34088) | 34088..34834 | + | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| JJW05_RS22670 (34889) | 34889..35449 | + | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| JJW05_RS22675 (35584) | 35584..35772 | + | 189 | WP_001345829.1 | hypothetical protein | - |
| JJW05_RS22680 (35970) | 35970..36056 | + | 87 | Protein_42 | endonuclease | - |
| JJW05_RS22685 (36237) | 36237..36548 | - | 312 | WP_000802277.1 | hypothetical protein | - |
| - (36844) | 36844..36905 | - | 62 | NuclAT_1 | - | - |
| - (36844) | 36844..36905 | - | 62 | NuclAT_1 | - | - |
| - (36844) | 36844..36905 | - | 62 | NuclAT_1 | - | - |
| - (36844) | 36844..36905 | - | 62 | NuclAT_1 | - | - |
| JJW05_RS22690 (36949) | 36949..37098 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
| JJW05_RS22695 (37382) | 37382..37639 | + | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| JJW05_RS22700 (37873) | 37873..37947 | + | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| JJW05_RS22705 (37940) | 37940..38422 | + | 483 | WP_001443034.1 | hypothetical protein | - |
| JJW05_RS22710 (38415) | 38415..39272 | + | 858 | WP_000774301.1 | incFII family plasmid replication initiator RepA | - |
| JJW05_RS22715 (40206) | 40206..41090 | + | 885 | WP_001345827.1 | hypothetical protein | - |
| JJW05_RS22720 (41086) | 41086..41255 | + | 170 | Protein_50 | resolvase | - |
| JJW05_RS22725 (41510) | 41510..41656 | + | 147 | Protein_51 | 3'-5' exonuclease | - |
| JJW05_RS22730 (41848) | 41848..44523 | - | 2676 | WP_000233113.1 | hypothetical protein | - |
| JJW05_RS22735 (44750) | 44750..45040 | + | 291 | WP_000538310.1 | hypothetical protein | - |
| JJW05_RS22740 (45030) | 45030..45929 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| JJW05_RS22745 (45979) | 45979..48204 | - | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| JJW05_RS22750 (48206) | 48206..49294 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| JJW05_RS22755 (49874) | 49874..50092 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| JJW05_RS22760 (50094) | 50094..50399 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| JJW05_RS22765 (50400) | 50400..51206 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| JJW05_RS22770 (51980) | 51980..52735 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| JJW05_RS22775 (53323) | 53323..54489 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| JJW05_RS22780 (54489) | 54489..55460 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| JJW05_RS22785 (56413) | 56413..57314 | + | 902 | Protein_63 | DUF1281 domain-containing protein | - |
| JJW05_RS22790 (57318) | 57318..57623 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| JJW05_RS22795 (57700) | 57700..58383 | + | 684 | WP_000085939.1 | DNA methylase | - |
| JJW05_RS22800 (58384) | 58384..58605 | + | 222 | WP_001104904.1 | hypothetical protein | - |
| JJW05_RS22805 (58499) | 58499..59053 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| JJW05_RS22810 (59099) | 59099..59875 | + | 777 | WP_001005032.1 | hypothetical protein | - |
| JJW05_RS22815 (60289) | 60289..60714 | + | 426 | WP_001198920.1 | antirestriction protein | - |
| JJW05_RS22820 (60761) | 60761..61183 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| JJW05_RS22825 (61180) | 61180..61371 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| JJW05_RS22830 (62177) | 62177..62716 | + | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| JJW05_RS22835 (62773) | 62773..63006 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| JJW05_RS22840 (63072) | 63072..65030 | + | 1959 | WP_000117173.1 | ParB/RepB/Spo0J family partition protein | - |
| JJW05_RS22845 (65085) | 65085..65519 | + | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| JJW05_RS22850 (65516) | 65516..66278 | + | 763 | Protein_76 | plasmid SOS inhibition protein A | - |
| - (66247) | 66247..66445 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (66247) | 66247..66445 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (66247) | 66247..66445 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (66247) | 66247..66445 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| JJW05_RS23020 (66452) | 66452..66601 | + | 150 | Protein_77 | DUF5431 family protein | - |
| JJW05_RS22855 (66543) | 66543..66668 | + | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| JJW05_RS22860 (66969) | 66969..67265 | - | 297 | Protein_79 | hypothetical protein | - |
| JJW05_RS22865 (67335) | 67335..67541 | + | 207 | WP_000547965.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|