MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93832 bp
Accession: NZ_CP067340 Location: 1..93832 Organism: Salmonella enterica subsp. enterica strain Se32 Replicon: plasmid pSe32
Accession: NZ_CP067340 Location: 1..93832 Organism: Salmonella enterica subsp. enterica strain Se32 Replicon: plasmid pSe32
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JG558_RS23545 () | 1237..1681 | - | 445 | Protein_1 | site-specific integrase | - |
| JG558_RS23550 () | 1850..2231 | - | 382 | Protein_2 | YgiW/YdeI family stress tolerance OB fold protein | - |
| JG558_RS23555 () | 2950..3252 | + | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| JG558_RS23560 () | 3527..4045 | + | 519 | WP_000748205.1 | major pilin PefA | - |
| JG558_RS23565 () | 4273..6681 | + | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| JG558_RS23570 () | 6674..7366 | + | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| JG558_RS23575 () | 7381..7938 | + | 558 | WP_010999940.1 | membrane protein | - |
| JG558_RS23580 () | 8191..9066 | + | 876 | WP_014343944.1 | hypothetical protein | - |
| JG558_RS23585 () | 9498..9710 | + | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| JG558_RS23590 () | 9695..10045 | + | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| JG558_RS23595 () | 10290..10943 | + | 654 | WP_000178592.1 | DsbA family protein | - |
| JG558_RS23600 () | 10933..11079 | + | 147 | WP_001192557.1 | hypothetical protein | - |
| JG558_RS23605 () | 11076..11975 | + | 900 | WP_010999938.1 | YjiK family protein | - |
| JG558_RS23610 () | 12065..12622 | + | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| JG558_RS23615 () | 12889..13647 | + | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| JG558_RS23620 () | 13744..13965 | - | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| JG558_RS23625 () | 14825..15706 | - | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| JG558_RS23630 () | 15687..15764 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| JG558_RS23635 () | 16014..16280 | - | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| JG558_RS23640 () | 16459..16901 | - | 443 | Protein_20 | phospholipase | - |
| JG558_RS23645 () | 17067..17222 | - | 156 | WP_000983042.1 | hypothetical protein | - |
| JG558_RS23650 () | 17235..17519 | - | 285 | WP_000477658.1 | hypothetical protein | - |
| JG558_RS23655 () | 17634..18197 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| JG558_RS23660 () | 18252..18992 | - | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| JG558_RS23665 () | 19012..24270 | - | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| JG558_RS23670 () | 24352..24579 | + | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| JG558_RS23675 () | 24579..24977 | + | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| JG558_RS23680 () | 24986..27148 | - | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| JG558_RS23685 () | 27525..28256 | - | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| JG558_RS23690 () | 28292..28786 | - | 495 | WP_010999946.1 | entry exclusion protein | - |
| JG558_RS23695 () | 28802..31624 | - | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| JG558_RS23700 () | 31621..33003 | - | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| JG558_RS23705 () | 32993..33541 | - | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JG558_RS23710 () | 33528..33821 | - | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JG558_RS23715 () | 34035..34784 | - | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JG558_RS23720 () | 34796..35011 | - | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| JG558_RS23725 () | 35022..36848 | - | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JG558_RS23730 () | 36845..37264 | - | 420 | WP_001229397.1 | HNH endonuclease | - |
| JG558_RS23735 () | 37301..37939 | - | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JG558_RS23740 () | 37924..38232 | - | 309 | WP_010999945.1 | hypothetical protein | - |
| JG558_RS23745 () | 38251..39243 | - | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| JG558_RS23750 () | 39240..39872 | - | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| JG558_RS23755 () | 39869..40255 | - | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| JG558_RS23760 () | 40230..42878 | - | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| JG558_RS23765 () | 42894..43157 | - | 264 | WP_001239255.1 | hypothetical protein | - |
| JG558_RS23770 () | 43274..43741 | - | 468 | WP_000549562.1 | hypothetical protein | - |
| JG558_RS23775 () | 43734..43955 | - | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| JG558_RS23780 () | 44090..44605 | - | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JG558_RS23785 () | 44602..44847 | - | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| JG558_RS23790 () | 44825..45421 | - | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| JG558_RS23795 () | 45411..46832 | - | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| JG558_RS23800 () | 46832..47572 | - | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| JG558_RS23805 () | 47559..48125 | - | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| JG558_RS23810 () | 48147..48458 | - | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| JG558_RS23815 () | 48473..48835 | - | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| JG558_RS23820 () | 48877..49104 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| JG558_RS23825 () | 49198..49884 | - | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| JG558_RS23830 () | 50077..50457 | - | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| JG558_RS23835 () | 50872..51342 | + | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| JG558_RS23840 () | 51653..52471 | - | 819 | Protein_60 | DUF945 domain-containing protein | - |
| JG558_RS23845 () | 52574..52732 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| JG558_RS23850 () | 52981..53718 | - | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| JG558_RS23855 () | 53715..54149 | - | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| JG558_RS23860 () | 54189..56186 | - | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| JG558_RS23865 () | 56255..56497 | - | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| JG558_RS23870 () | 56552..57070 | - | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| JG558_RS23875 () | 57771..58094 | - | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| JG558_RS23880 () | 58330..58764 | - | 435 | WP_000274533.1 | DUF1380 family protein | - |
| JG558_RS23885 () | 58831..59265 | - | 435 | WP_001200150.1 | antirestriction protein | - |
| JG558_RS23890 () | 59761..60525 | - | 765 | WP_001246548.1 | membrane protein | - |
| JG558_RS23895 () | 60597..61010 | - | 414 | WP_000990114.1 | DUF1380 family protein | - |
| JG558_RS23900 () | 61066..61287 | - | 222 | WP_001109588.1 | hypothetical protein | - |
| JG558_RS23905 () | 61287..61967 | - | 681 | WP_000088645.1 | DNA methylase | - |
| JG558_RS23910 () | 62349..62705 | - | 357 | WP_000369839.1 | hypothetical protein | - |
| JG558_RS23915 () | 62698..63168 | - | 471 | WP_000490265.1 | hypothetical protein | - |
| JG558_RS23920 () | 63679..64101 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JG558_RS23925 () | 64101..65375 | + | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| JG558_RS23930 () | 65457..66431 | - | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| JG558_RS23935 () | 66431..67636 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| JG558_RS23940 () | 68051..68992 | + | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| JG558_RS23945 () | 69024..69590 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| JG558_RS23950 () | 69647..69982 | - | 336 | WP_001527010.1 | hypothetical protein | - |
| JG558_RS23955 () | 70166..70582 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| JG558_RS23960 () | 70668..71783 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| JG558_RS23965 () | 72042..72530 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| JG558_RS23970 () | 73185..73925 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| JG558_RS23975 () | 74132..74692 | + | 561 | WP_001240331.1 | recombinase family protein | - |
| JG558_RS23980 () | 74676..76340 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| JG558_RS23985 () | 76273..77298 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| JG558_RS23990 () | 77487..78524 | - | 1038 | WP_001121399.1 | IS630 family transposase | - |
| JG558_RS23995 () | 79133..80026 | + | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| JG558_RS24000 () | 80200..80364 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| JG558_RS24005 () | 80538..81305 | + | 768 | WP_001526990.1 | virulence protein SpvA | - |
| JG558_RS24010 () | 81268..81435 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| JG558_RS24015 () | 81487..83262 | + | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| JG558_RS24020 () | 83543..84268 | + | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| JG558_RS24025 () | 84529..85179 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| JG558_RS24030 () | 85306..85730 | - | 425 | Protein_98 | IS200/IS605 family transposase | - |
| JG558_RS24035 () | 85787..86137 | + | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| JG558_RS24040 () | 86204..86764 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| JG558_RS24045 () | 86920..87207 | + | 288 | WP_071530243.1 | hypothetical protein | - |
| JG558_RS24050 () | 87484..87969 | - | 486 | WP_000905606.1 | membrane protein | - |
| JG558_RS24055 () | 87963..88472 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| JG558_RS24060 () | 88476..89189 | - | 714 | Protein_104 | EAL domain-containing protein | - |
| JG558_RS24065 () | 89198..89980 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| JG558_RS24070 () | 90015..90536 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| JG558_RS24075 () | 90533..90823 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| JG558_RS24080 () | 90825..91130 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | - |
| JG558_RS24085 () | 91132..91350 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| JG558_RS24090 () | 92026..92547 | + | 522 | WP_010999942.1 | hypothetical protein | - |
| JG558_RS24095 () | 93031..93327 | + | 297 | WP_001687482.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|