MGE detailed information
MGE type: Genomic_island MGE length: 42485 bp
Accession: NZ_CP066928 Location: 3647635..3690119 Organism: Xanthomonas campestris pv. incanae strain CFBP1371 Replicon: chromosome
Accession: NZ_CP066928 Location: 3647635..3690119 Organism: Xanthomonas campestris pv. incanae strain CFBP1371 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH299_RS16150 (JH299_16110) | 3643359..3644240 | + | 882 | WP_042594911.1 | outer membrane protein assembly factor BamD | - |
| JH299_RS16155 (JH299_16115) | 3644688..3645680 | + | 993 | WP_076037047.1 | hypothetical protein | - |
| JH299_RS16160 (JH299_16120) | 3645674..3647329 | - | 1656 | WP_175611668.1 | NAD+ synthase | - |
| JH299_RS16165 (JH299_16125) | 3647329..3647631 | - | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JH299_RS16170 (JH299_16130) | 3647635..3647919 | - | 285 | WP_040942253.1 | CopG family transcriptional regulator | - |
| JH299_RS16175 (JH299_16135) | 3648149..3649024 | - | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| JH299_RS16180 (JH299_16140) | 3649049..3650218 | - | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH299_RS16185 (JH299_16145) | 3650452..3652062 | + | 1611 | WP_076037049.1 | Globin-coupled histidine kinase | VF |
| JH299_RS16190 (JH299_16150) | 3652271..3653665 | + | 1395 | WP_043921909.1 | Regulatory protein AtoC | VF |
| JH299_RS16195 (JH299_16155) | 3653863..3654219 | + | 357 | WP_139328384.1 | hypothetical protein | - |
| JH299_RS16200 (JH299_16160) | 3654219..3654956 | + | 738 | WP_070690009.1 | zeta toxin family protein | - |
| JH299_RS16205 (JH299_16165) | 3655139..3656845 | - | 1707 | WP_175611860.1 | putative type II secretion system protein HxcR | VF |
| JH299_RS16210 (JH299_16170) | 3657028..3657435 | - | 408 | WP_076037052.1 | Fimbrial protein | VF |
| JH299_RS16215 (JH299_16175) | 3657780..3659036 | + | 1257 | WP_076037882.1 | Type II secretion system protein F | VF |
| JH299_RS16220 (JH299_16180) | 3659043..3659906 | + | 864 | WP_040940797.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| JH299_RS16225 (JH299_16185) | 3659920..3660543 | + | 624 | WP_076037053.1 | dephospho-CoA kinase | - |
| JH299_RS16230 (JH299_16190) | 3661072..3661473 | + | 402 | WP_076037054.1 | SymE family type I addiction module toxin | - |
| JH299_RS16235 (JH299_16195) | 3661549..3661839 | + | 291 | WP_014508712.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| JH299_RS16240 (JH299_16200) | 3661836..3662327 | + | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | Toxin Detail |
| JH299_RS16245 (JH299_16205) | 3662470..3663804 | - | 1335 | WP_019237347.1 | HAMP domain-containing sensor histidine kinase | - |
| JH299_RS16250 (JH299_16210) | 3663797..3664474 | - | 678 | WP_003490678.1 | Transcriptional regulatory protein TcrA | VF |
| JH299_RS16255 (JH299_16215) | 3665124..3665999 | - | 876 | WP_076037055.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH299_RS16260 (JH299_16220) | 3666492..3668621 | + | 2130 | WP_016945001.1 | glycogen debranching protein GlgX | - |
| JH299_RS16265 (JH299_16225) | 3669152..3669544 | - | 393 | WP_011038224.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH299_RS16270 (JH299_16230) | 3669635..3670030 | - | 396 | WP_011038225.1 | hypothetical protein | - |
| JH299_RS16275 (JH299_16235) | 3670215..3670361 | - | 147 | WP_076037056.1 | hypothetical protein | - |
| JH299_RS16280 | 3670479..3670820 | - | 342 | WP_228438057.1 | hypothetical protein | - |
| JH299_RS16285 (JH299_16245) | 3670953..3671324 | - | 372 | WP_076037057.1 | hypothetical protein | - |
| JH299_RS16290 (JH299_16250) | 3672027..3672368 | + | 342 | WP_070689991.1 | hypothetical protein | - |
| JH299_RS16295 (JH299_16255) | 3672433..3672714 | + | 282 | WP_076037058.1 | DUF6516 family protein | - |
| JH299_RS16300 (JH299_16260) | 3672722..3673090 | + | 369 | WP_065628137.1 | transcriptional regulator | - |
| JH299_RS16305 (JH299_16265) | 3673162..3673953 | - | 792 | WP_076037059.1 | hypothetical protein | - |
| JH299_RS16310 (JH299_16270) | 3674069..3675171 | + | 1103 | WP_100101058.1 | IS3 family transposase IS1404 | Transposase |
| JH299_RS16315 (JH299_16275) | 3675330..3675983 | - | 654 | WP_147309026.1 | hypothetical protein | - |
| JH299_RS16320 (JH299_16280) | 3676601..3676945 | + | 345 | WP_228438129.1 | hypothetical protein | - |
| JH299_RS16325 (JH299_16285) | 3676942..3677358 | + | 417 | WP_076037060.1 | hypothetical protein | - |
| JH299_RS16330 (JH299_16290) | 3677568..3679199 | - | 1632 | WP_076037061.1 | type III secretion system effector XopAE | - |
| JH299_RS16335 (JH299_16295) | 3679782..3680060 | + | 279 | WP_139328385.1 | hypothetical protein | - |
| JH299_RS16340 (JH299_16300) | 3680494..3680718 | - | 225 | WP_175611669.1 | hypothetical protein | - |
| JH299_RS16345 (JH299_16305) | 3681263..3682663 | + | 1401 | WP_076037063.1 | hypothetical protein ; Integrase | Integrase |
| JH299_RS16350 (JH299_16310) | 3682865..3683338 | + | 474 | WP_139328386.1 | hypothetical protein | - |
| JH299_RS16355 (JH299_16315) | 3683465..3684337 | + | 873 | WP_139328387.1 | hypothetical protein | - |
| JH299_RS16360 (JH299_16320) | 3684573..3684896 | - | 324 | WP_175611861.1 | helix-turn-helix transcriptional regulator | - |
| JH299_RS16370 (JH299_16330) | 3686939..3687737 | + | 799 | WP_100097398.1 | IS5 family transposase IS1480b | Transposase |
| JH299_RS16375 (JH299_16335) | 3688257..3688481 | + | 225 | WP_139328388.1 | hypothetical protein | - |
| JH299_RS16380 (JH299_16340) | 3688608..3690167 | - | 1560 | WP_076037065.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| JH299_RS16390 (JH299_16350) | 3690432..3692216 | - | 1785 | WP_076037066.1 | autotransporter domain-containing protein | - |
| JH299_RS16395 (JH299_16355) | 3692405..3692605 | + | 201 | WP_076037067.1 | sulfur carrier protein ThiS | - |
| JH299_RS16400 (JH299_16360) | 3692654..3693448 | + | 795 | WP_011038257.1 | thiazole synthase | - |
| JH299_RS16405 (JH299_16365) | 3693591..3694376 | + | 786 | WP_070689962.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|