MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 34472 bp
Accession: NZ_CP065534 Location: 2377500..2411971 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Accession: NZ_CP065534 Location: 2377500..2411971 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6N93_RS10425 () | 2373043..2373699 | - | 657 | WP_026741054.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| I6N93_RS10430 () | 2374326..2374550 | + | 225 | WP_085689679.1 | DUF2594 family protein | - |
| I6N93_RS10440 () | 2375267..2376673 | + | 1407 | WP_085689681.1 | D-serine/D-alanine/glycine transporter | - |
| I6N93_RS10445 () | 2376797..2377069 | - | 273 | Protein_2032 | LysR family transcriptional regulator | - |
| I6N93_RS10455 () | 2377678..2378949 | + | 1272 | WP_085689683.1 | HTH-type transcriptional regulator MlrA ; Integrase | Integrase |
| I6N93_RS10460 () | 2379083..2379397 | - | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| I6N93_RS10465 () | 2379583..2379897 | - | 315 | WP_085689685.1 | helix-turn-helix domain-containing protein | - |
| I6N93_RS10470 () | 2380044..2380325 | + | 282 | WP_085689687.1 | helix-turn-helix domain-containing protein | - |
| I6N93_RS10475 () | 2380740..2381654 | + | 915 | WP_085689689.1 | hypothetical protein | - |
| I6N93_RS10480 () | 2381808..2382002 | + | 195 | WP_039359985.1 | AlpA family transcriptional regulator | - |
| I6N93_RS10485 () | 2382019..2382603 | + | 585 | WP_085689691.1 | DUF2857 domain-containing protein | - |
| I6N93_RS10490 () | 2382593..2382802 | + | 210 | WP_014699379.1 | TraR/DksA family transcriptional regulator | - |
| I6N93_RS10495 () | 2383262..2384578 | + | 1317 | WP_085689692.1 | hypothetical protein | - |
| I6N93_RS10500 () | 2384562..2385266 | + | 705 | WP_085689694.1 | hypothetical protein | - |
| I6N93_RS10505 () | 2385250..2387604 | + | 2355 | WP_085689696.1 | AAA family ATPase | - |
| I6N93_RS10510 () | 2388005..2388235 | - | 231 | WP_139829945.1 | hypothetical protein | - |
| I6N93_RS10515 () | 2388389..2388601 | - | 213 | WP_139829946.1 | hypothetical protein | - |
| I6N93_RS10520 () | 2389212..2389433 | + | 222 | WP_085689699.1 | hypothetical protein | - |
| I6N93_RS10525 () | 2389507..2390172 | + | 666 | WP_085689701.1 | L-amino acid amidase | VF |
| I6N93_RS10530 () | 2390169..2390450 | + | 282 | WP_099017452.1 | TrbC/VirB2 family protein | - |
| I6N93_RS10535 () | 2390460..2393207 | + | 2748 | WP_085689703.1 | Pyruvate kinase I | VF |
| I6N93_RS10540 () | 2393231..2393947 | + | 717 | WP_085689705.1 | type IV secretion system protein | - |
| I6N93_RS10545 () | 2393958..2394182 | + | 225 | WP_085689707.1 | EexN family lipoprotein | - |
| I6N93_RS10550 () | 2394194..2395234 | + | 1041 | WP_085689709.1 | type IV secretion system protein | - |
| I6N93_RS10555 () | 2395322..2395462 | + | 141 | WP_176222567.1 | hypothetical protein | - |
| I6N93_RS10560 () | 2395455..2396138 | + | 684 | WP_085689711.1 | Cysteine desulfuration protein SufE | VF |
| I6N93_RS10565 () | 2396135..2397028 | + | 894 | WP_176222568.1 | P-type conjugative transfer protein VirB9 | - |
| I6N93_RS10570 () | 2397025..2398257 | + | 1233 | WP_085689713.1 | FeS cluster assembly protein SufD | VF |
| I6N93_RS10575 () | 2398247..2399263 | + | 1017 | WP_085689715.1 | putative ATP-dependent transporter SufC | VF |
| I6N93_RS10580 () | 2399307..2399609 | + | 303 | WP_085689717.1 | conjugal transfer protein | - |
| I6N93_RS10585 () | 2400407..2402143 | + | 1737 | WP_085689719.1 | type IV secretory system conjugative DNA transfer family protein | - |
| I6N93_RS10590 () | 2402152..2402904 | + | 753 | WP_085689721.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| I6N93_RS10595 () | 2402938..2403252 | - | 315 | WP_039360030.1 | CcdB family protein | Toxin Detail |
| I6N93_RS10600 () | 2403255..2403491 | - | 237 | WP_029729596.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| I6N93_RS10605 () | 2403811..2404064 | - | 254 | Protein_2063 | DNA primase | - |
| I6N93_RS10610 () | 2404477..2405562 | + | 1086 | WP_085689723.1 | SIR2 family protein | - |
| I6N93_RS10615 () | 2405564..2406931 | + | 1368 | Protein_2065 | ATP-binding protein | - |
| I6N93_RS10625 () | 2408132..2408464 | + | 333 | Protein_2067 | IS3 family transposase ISEc14 | Transposase |
| I6N93_RS10630 () | 2408544..2408798 | + | 255 | Protein_2068 | IS30 family transposase | - |
| I6N93_RS10635 () | 2408914..2410008 | - | 1095 | WP_085690239.1 | hypothetical protein | - |
| I6N93_RS10640 () | 2410526..2411641 | + | 1116 | WP_085690241.1 | DUF2971 domain-containing protein | - |
| I6N93_RS10645 () | 2412138..2413401 | + | 1264 | Protein_2071 | integrase arm-type DNA-binding domain-containing protein | - |
| I6N93_RS10650 () | 2413578..2413862 | + | 285 | WP_197669153.1 | transposase | - |
| I6N93_RS10655 () | 2413874..2414712 | + | 839 | Protein_2073 | IS3 family transposase | - |
| I6N93_RS10660 () | 2415131..2416048 | + | 918 | WP_085689842.1 | Gfo/Idh/MocA family oxidoreductase | - |
| I6N93_RS10665 () | 2416028..2416201 | - | 174 | WP_176222572.1 | hypothetical protein | - |
| I6N93_RS10670 () | 2416218..2416862 | - | 645 | WP_085689834.1 | LysE family translocator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|