MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 177355 bp
Accession: NZ_CP065209 Location: 1333345..1510699 Organism: Bifidobacterium longum subsp. longum strain BB-46 Replicon: chromosome
Accession: NZ_CP065209 Location: 1333345..1510699 Organism: Bifidobacterium longum subsp. longum strain BB-46 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3242_RS05955 (I3242_05955) | 1329615..1331246 | + | 1632 | WP_013582778.1 | substrate-binding domain-containing protein | - |
| I3242_RS05960 (I3242_05960) | 1331324..1332013 | - | 690 | WP_007054320.1 | M23 family metallopeptidase | - |
| I3242_RS05980 (I3242_05980) | 1333020..1334063 | - | 1044 | WP_007054363.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| I3242_RS05985 (I3242_05985) | 1334060..1334614 | - | 555 | WP_008783284.1 | Mycothiol acetyltransferase | VF |
| I3242_RS05990 (I3242_05990) | 1334631..1335512 | - | 882 | WP_007054365.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| I3242_RS05995 (I3242_05995) | 1335574..1336140 | - | 567 | WP_007052688.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| I3242_RS06000 (I3242_06000) | 1336161..1337132 | - | 972 | WP_007057620.1 | DNA polymerase III subunit delta | - |
| I3242_RS06005 (I3242_06005) | 1337199..1338545 | - | 1347 | WP_013582779.1 | amidohydrolase family protein | - |
| I3242_RS06010 (I3242_06010) | 1338685..1340439 | - | 1755 | WP_016507697.1 | ComEC/Rec2 family competence protein | - |
| I3242_RS06015 (I3242_06015) | 1340436..1340933 | - | 498 | WP_007054369.1 | helix-hairpin-helix domain-containing protein | - |
| I3242_RS06020 (I3242_06020) | 1341375..1344338 | - | 2964 | WP_010080746.1 | leucine--tRNA ligase | - |
| I3242_RS06025 (I3242_06025) | 1344381..1345226 | - | 846 | WP_010080747.1 | glutamate ABC transporter substrate-binding protein | - |
| I3242_RS06030 (I3242_06030) | 1345322..1346272 | - | 951 | WP_007054371.1 | magnesium transporter CorA family protein | - |
| I3242_RS06035 (I3242_06035) | 1346387..1347232 | - | 846 | WP_007052680.1 | histidine phosphatase family protein | - |
| I3242_RS06040 (I3242_06040) | 1347301..1348596 | + | 1296 | WP_013582782.1 | DNA methyltransferase | - |
| I3242_RS06045 (I3242_06045) | 1348624..1349028 | - | 405 | WP_007052678.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| I3242_RS06050 (I3242_06050) | 1349307..1350242 | + | 936 | WP_007052677.1 | DMT family transporter | - |
| I3242_RS06055 (I3242_06060) | 1350626..1351594 | + | 969 | WP_007052675.1 | hypothetical protein | - |
| I3242_RS06060 (I3242_06065) | 1351667..1352206 | + | 540 | WP_032735440.1 | hypothetical protein | VF |
| I3242_RS06065 (I3242_06070) | 1352303..1352818 | + | 516 | WP_032743275.1 | IS3 family transposase ISBlo3 | Transposase |
| I3242_RS06070 (I3242_06075) | 1352818..1353390 | + | 573 | Protein_1157 | IS3 family transposase ISBlo3 | Transposase |
| I3242_RS06075 (I3242_06080) | 1353524..1354726 | + | 1203 | WP_007053137.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| I3242_RS06080 (I3242_06085) | 1354723..1355688 | + | 966 | WP_013582545.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| I3242_RS06085 (I3242_06090) | 1355685..1356740 | + | 1056 | WP_013582544.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| I3242_RS06090 (I3242_06095) | 1356855..1357145 | + | 291 | Protein_1161 | IS3 family transposase ISBlo3 | Transposase |
| I3242_RS06095 (I3242_06100) | 1357263..1359587 | - | 2325 | WP_181989105.1 | Bifunctional (p)ppGpp synthase/hydrolase RelA | VF |
| I3242_RS06100 (I3242_06105) | 1359721..1360197 | - | 477 | WP_007055963.1 | dUTP diphosphatase | - |
| I3242_RS06105 (I3242_06110) | 1360197..1360490 | - | 294 | WP_007052669.1 | DUF4193 domain-containing protein | - |
| I3242_RS06110 (I3242_06115) | 1360649..1361740 | + | 1092 | WP_007056777.1 | septation protein SepH | - |
| I3242_RS06115 (I3242_06120) | 1361750..1363018 | - | 1269 | WP_007054496.1 | alkaline phosphatase family protein | - |
| I3242_RS06120 (I3242_06125) | 1363269..1365998 | + | 2730 | WP_007052666.1 | DNA topoisomerase IV subunit A | - |
| I3242_RS06125 (I3242_06130) | 1366143..1366931 | + | 789 | WP_013582787.1 | Transcriptional regulatory protein TcrA | VF |
| I3242_RS06130 (I3242_06135) | 1366942..1371675 | - | 4734 | WP_013582788.1 | DEAD/DEAH box helicase | - |
| I3242_RS06135 (I3242_06140) | 1371691..1372683 | - | 993 | WP_013582789.1 | ribokinase | - |
| I3242_RS06140 (I3242_06145) | 1372727..1373953 | - | 1227 | WP_013582790.1 | MFS transporter | - |
| I3242_RS06145 (I3242_06150) | 1374120..1376396 | - | 2277 | WP_013582791.1 | DNA topoisomerase IV subunit B | - |
| I3242_RS06150 (I3242_06155) | 1376454..1377878 | - | 1425 | WP_007055162.1 | RNA polymerase sigma factor RpoD | VF |
| I3242_RS06155 (I3242_06160) | 1378081..1378743 | - | 663 | WP_007055157.1 | DUF4192 family protein | - |
| I3242_RS06160 (I3242_06165) | 1378948..1380030 | + | 1083 | WP_007055156.1 | polyprenyl synthetase family protein | - |
| I3242_RS06165 (I3242_06170) | 1380174..1382447 | + | 2274 | WP_032740855.1 | Serine/threonine-protein kinase PknD | VF |
| I3242_RS06170 (I3242_06175) | 1382499..1383203 | - | 705 | WP_007058769.1 | lysophospholipid acyltransferase family protein | - |
| I3242_RS06175 (I3242_06180) | 1383264..1383959 | + | 696 | WP_013582793.1 | hypothetical protein | - |
| I3242_RS06180 (I3242_06185) | 1384113..1384301 | - | 189 | WP_007054484.1 | hypothetical protein | - |
| I3242_RS06185 (I3242_06190) | 1384348..1385394 | - | 1047 | WP_013582794.1 | anthranilate phosphoribosyltransferase | - |
| I3242_RS06190 (I3242_06195) | 1386122..1386337 | + | 216 | WP_007055155.1 | transposase | - |
| I3242_RS06195 (I3242_06200) | 1386648..1389542 | - | 2895 | WP_007055154.1 | preprotein translocase subunit SecA | - |
| I3242_RS06200 (I3242_06205) | 1389704..1390366 | - | 663 | WP_007054480.1 | ribosome-associated translation inhibitor RaiA | - |
| I3242_RS06210 (I3242_06215) | 1391243..1391836 | - | 594 | WP_032736307.1 | regulatory protein RecX | - |
| I3242_RS06215 (I3242_06220) | 1391839..1393032 | - | 1194 | WP_007052644.1 | recombinase RecA | - |
| I3242_RS06220 (I3242_06225) | 1393333..1393566 | - | 234 | WP_007052642.1 | DUF3046 domain-containing protein | - |
| I3242_RS06225 (I3242_06230) | 1393678..1394193 | - | 516 | WP_007052641.1 | helix-turn-helix transcriptional regulator | - |
| I3242_RS06230 (I3242_06235) | 1394253..1394786 | - | 534 | WP_007054477.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| I3242_RS06235 (I3242_06240) | 1394798..1395448 | - | 651 | WP_007058588.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| I3242_RS06240 (I3242_06245) | 1395610..1398519 | - | 2910 | WP_013582797.1 | DNA translocase FtsK | - |
| I3242_RS06245 (I3242_06250) | 1398731..1399480 | + | 750 | WP_013582798.1 | putative adenosine monophosphate-protein transferase fic | VF |
| I3242_RS06250 (I3242_06255) | 1399514..1400500 | - | 987 | WP_007052636.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| I3242_RS06255 (I3242_06260) | 1400511..1401965 | - | 1455 | WP_032743317.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| I3242_RS06260 (I3242_06265) | 1402097..1402837 | + | 741 | WP_007056209.1 | GTP pyrophosphokinase YwaC | VF |
| I3242_RS06265 (I3242_06270) | 1402870..1403886 | - | 1017 | WP_007052632.1 | DMT family transporter | - |
| I3242_RS06270 (I3242_06275) | 1404026..1404925 | - | 900 | WP_007052631.1 | Bax inhibitor-1/YccA family protein | - |
| I3242_RS06275 (I3242_06280) | 1405106..1405966 | - | 861 | WP_013582800.1 | DUF5067 domain-containing protein | - |
| I3242_RS06280 (I3242_06285) | 1406329..1407534 | + | 1206 | WP_010080850.1 | histidine kinase | - |
| I3242_RS06285 (I3242_06290) | 1407569..1408294 | + | 726 | WP_007056206.1 | Transcriptional regulatory protein LiaR | VF |
| I3242_RS06290 (I3242_06295) | 1408334..1408975 | + | 642 | WP_007052627.1 | GNAT family N-acetyltransferase | - |
| I3242_RS06295 (I3242_06300) | 1409065..1411170 | + | 2106 | WP_013582801.1 | DUF262 domain-containing protein | - |
| I3242_RS06300 (I3242_06305) | 1411220..1411711 | - | 492 | WP_007052625.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| I3242_RS06305 (I3242_06310) | 1411708..1412100 | - | 393 | WP_013410773.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| I3242_RS06310 (I3242_06315) | 1412245..1414944 | - | 2700 | WP_013582802.1 | aconitate hydratase AcnA | - |
| I3242_RS06315 (I3242_06320) | 1415062..1417650 | - | 2589 | WP_013582803.1 | cation-translocating P-type ATPase | - |
| I3242_RS06320 (I3242_06325) | 1417741..1418436 | - | 696 | WP_007055252.1 | hypothetical protein | - |
| I3242_RS06325 (I3242_06330) | 1418448..1419716 | - | 1269 | WP_007055251.1 | RsmD family RNA methyltransferase | - |
| I3242_RS06330 (I3242_06335) | 1419706..1420464 | - | 759 | WP_008783114.1 | DUF3159 domain-containing protein | - |
| I3242_RS06335 (I3242_06340) | 1420480..1421334 | - | 855 | WP_011068026.1 | DUF3710 domain-containing protein | - |
| I3242_RS06340 (I3242_06345) | 1421402..1422262 | - | 861 | WP_007058594.1 | exodeoxyribonuclease III | - |
| I3242_RS06345 (I3242_06350) | 1422367..1424376 | - | 2010 | WP_013582805.1 | Glutathione import ATP-binding protein GsiA | VF |
| I3242_RS06350 (I3242_06355) | 1424399..1425403 | - | 1005 | WP_003832139.1 | ABC transporter permease | - |
| I3242_RS06355 (I3242_06360) | 1425422..1426348 | - | 927 | Protein_1213 | ABC transporter permease | - |
| I3242_RS06360 (I3242_06365) | 1426649..1428289 | - | 1641 | WP_007054457.1 | ABC transporter substrate-binding protein | - |
| I3242_RS06365 (I3242_06370) | 1428541..1429614 | - | 1074 | WP_013582807.1 | Tyrosine recombinase XerC | VF |
| I3242_RS06370 (I3242_06375) | 1429649..1429906 | - | 258 | WP_007052610.1 | hypothetical protein | - |
| I3242_RS06375 (I3242_06380) | 1430118..1431185 | - | 1068 | WP_013582808.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| I3242_RS06380 (I3242_06385) | 1431179..1432156 | - | 978 | WP_008783121.1 | prephenate dehydratase domain-containing protein | - |
| I3242_RS06385 (I3242_06390) | 1432236..1432682 | - | 447 | WP_007052607.1 | alcohol dehydrogenase | - |
| I3242_RS06390 (I3242_06395) | 1432782..1434713 | - | 1932 | WP_007052606.1 | GTP-binding protein TypA/BipA | VF |
| I3242_RS06395 (I3242_06400) | 1435028..1436377 | - | 1350 | WP_007052605.1 | MFS transporter | - |
| I3242_RS06400 (I3242_06405) | 1436409..1437656 | - | 1248 | WP_007054451.1 | cysteine desulfurase family protein | - |
| I3242_RS06405 (I3242_06410) | 1437659..1438552 | - | 894 | WP_007052603.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| I3242_RS06410 (I3242_06415) | 1438556..1440187 | - | 1632 | WP_007054450.1 | L-aspartate oxidase | - |
| I3242_RS06415 (I3242_06420) | 1440279..1441559 | - | 1281 | WP_007052601.1 | quinolinate synthase NadA | - |
| I3242_RS06420 (I3242_06425) | 1441619..1442446 | - | 828 | WP_013582809.1 | NUDIX domain-containing protein | - |
| I3242_RS06425 (I3242_06430) | 1442578..1443294 | - | 717 | WP_007055260.1 | SMC-Scp complex subunit ScpB | - |
| I3242_RS06430 (I3242_06435) | 1443307..1444221 | - | 915 | WP_007052598.1 | ScpA family protein | - |
| I3242_RS06435 (I3242_06440) | 1444240..1445079 | - | 840 | WP_007052597.1 | Nitrogenase iron protein | VF |
| I3242_RS06440 (I3242_06445) | 1445341..1448187 | - | 2847 | WP_013582810.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| I3242_RS06445 (I3242_06450) | 1448315..1449241 | - | 927 | WP_032743318.1 | Tyrosine recombinase XerD | VF |
| I3242_RS06450 (I3242_06455) | 1449311..1449694 | - | 384 | WP_007052594.1 | 50S ribosomal protein L20 | - |
| I3242_RS06455 (I3242_06460) | 1449747..1449941 | - | 195 | WP_007052593.1 | 50S ribosomal protein L35 | - |
| I3242_RS06460 (I3242_06465) | 1449922..1450644 | - | 723 | WP_032682519.1 | translation initiation factor IF-3 | - |
| I3242_RS06465 (I3242_06470) | 1450929..1451912 | - | 984 | WP_225090007.1 | fused MFS/spermidine synthase | - |
| I3242_RS06470 (I3242_06475) | 1451848..1452063 | - | 216 | WP_162094057.1 | hypothetical protein | - |
| I3242_RS06475 (I3242_06480) | 1452165..1452890 | + | 726 | WP_007054441.1 | thiamine diphosphokinase | - |
| I3242_RS06480 (I3242_06485) | 1453131..1454189 | + | 1059 | WP_007052589.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| I3242_RS06485 (I3242_06490) | 1454283..1454792 | + | 510 | WP_007054439.1 | Cys-tRNA(Pro) deacylase | - |
| I3242_RS06490 (I3242_06495) | 1454832..1455845 | - | 1014 | WP_256337108.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| I3242_RS06495 (I3242_06500) | 1456115..1457071 | + | 957 | WP_007054437.1 | aldose 1-epimerase family protein | - |
| I3242_RS06500 (I3242_06505) | 1457196..1458140 | + | 945 | WP_007057264.1 | aldose 1-epimerase family protein | - |
| I3242_RS06505 (I3242_06510) | 1458406..1458726 | - | 321 | WP_007055264.1 | hypothetical protein | - |
| I3242_RS06510 (I3242_06515) | 1458726..1459478 | - | 753 | WP_007057260.1 | sigma-70 family RNA polymerase sigma factor | - |
| I3242_RS06515 (I3242_06520) | 1459653..1461206 | + | 1554 | WP_013582813.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| I3242_RS06520 (I3242_06525) | 1461328..1462323 | + | 996 | WP_013410747.1 | GNAT family N-acetyltransferase | - |
| I3242_RS06525 (I3242_06530) | 1462442..1466119 | - | 3678 | WP_013582814.1 | chromosome segregation protein SMC | - |
| I3242_RS06530 (I3242_06535) | 1466180..1467784 | - | 1605 | WP_007052575.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| I3242_RS06535 (I3242_06540) | 1468910..1469890 | + | 981 | WP_032736338.1 | hypothetical protein | - |
| I3242_RS06540 (I3242_06545) | 1470194..1471789 | + | 1596 | WP_013582815.1 | aminopeptidase P family protein | - |
| I3242_RS06545 (I3242_06550) | 1471838..1472359 | + | 522 | WP_007057255.1 | NUDIX domain-containing protein | - |
| I3242_RS06550 (I3242_06555) | 1472409..1474118 | - | 1710 | WP_007052568.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| I3242_RS06555 (I3242_06560) | 1474122..1475291 | - | 1170 | WP_007052567.1 | ABC transporter permease | - |
| I3242_RS06560 (I3242_06565) | 1475293..1476384 | - | 1092 | WP_007052566.1 | ABC transporter permease | - |
| I3242_RS06565 (I3242_06570) | 1476553..1478187 | - | 1635 | WP_007057390.1 | ABC transporter substrate-binding protein | - |
| I3242_RS06570 (I3242_06575) | 1478467..1479750 | - | 1284 | WP_007057958.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
| I3242_RS06575 (I3242_06580) | 1479806..1480618 | - | 813 | WP_007052563.1 | glucosamine-6-phosphate deaminase | - |
| I3242_RS06580 (I3242_06585) | 1480956..1482080 | + | 1125 | WP_007052562.1 | ROK family transcriptional regulator | - |
| I3242_RS06585 (I3242_06590) | 1482220..1483134 | - | 915 | WP_023658453.1 | ROK family protein | - |
| I3242_RS06590 (I3242_06595) | 1483361..1484575 | + | 1215 | WP_032740859.1 | ROK family transcriptional regulator | - |
| I3242_RS06595 (I3242_06600) | 1484648..1485544 | + | 897 | WP_013582817.1 | carbohydrate kinase | - |
| I3242_RS06600 (I3242_06605) | 1485619..1486008 | + | 390 | WP_013582818.1 | VOC family protein | - |
| I3242_RS06605 (I3242_06610) | 1486114..1487358 | + | 1245 | WP_013582819.1 | MFS transporter | - |
| I3242_RS06610 (I3242_06615) | 1487455..1487943 | - | 489 | WP_013582820.1 | D-aminoacyl-tRNA deacylase | - |
| I3242_RS06615 (I3242_06620) | 1488033..1488719 | - | 687 | WP_007052555.1 | VWA domain-containing protein | - |
| I3242_RS06620 (I3242_06625) | 1488863..1489966 | - | 1104 | WP_007056379.1 | macro domain-containing protein | - |
| I3242_RS06630 (I3242_06635) | 1490707..1491636 | - | 930 | WP_013582822.1 | FtsQ-type POTRA domain-containing protein | - |
| I3242_RS06635 (I3242_06640) | 1491771..1493309 | - | 1539 | WP_013582823.1 | UDP-N-acetylmuramate--L-alanine ligase | - |
| I3242_RS06640 (I3242_06645) | 1493410..1494591 | - | 1182 | WP_007052550.1 | UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase | - |
| I3242_RS06645 (I3242_06650) | 1494607..1495824 | - | 1218 | WP_007054401.1 | putative lipid II flippase FtsW | - |
| I3242_RS06650 (I3242_06655) | 1495811..1497256 | - | 1446 | WP_007054400.1 | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase | - |
| I3242_RS06655 (I3242_06660) | 1497311..1498417 | - | 1107 | WP_007052547.1 | phospho-N-acetylmuramoyl-pentapeptide- transferase | - |
| I3242_RS06660 (I3242_06665) | 1498462..1499913 | - | 1452 | WP_007054398.1 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase | - |
| I3242_RS06665 (I3242_06670) | 1499962..1500834 | - | 873 | WP_007054397.1 | hypothetical protein | - |
| I3242_RS06670 (I3242_06675) | 1500861..1502663 | - | 1803 | WP_013582825.1 | penicillin-binding protein 2 | - |
| I3242_RS06675 (I3242_06680) | 1502660..1503109 | - | 450 | WP_007052543.1 | hypothetical protein | - |
| I3242_RS06680 (I3242_06685) | 1503116..1504195 | - | 1080 | WP_007052542.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| I3242_RS06685 (I3242_06690) | 1504195..1504716 | - | 522 | WP_007052541.1 | division/cell wall cluster transcriptional repressor MraZ | - |
| I3242_RS06690 (I3242_06695) | 1505049..1507328 | + | 2280 | WP_007052539.1 | AAA family ATPase | - |
| I3242_RS06695 (I3242_06700) | 1507339..1508538 | + | 1200 | WP_007054393.1 | phosphoglycerate dehydrogenase | - |
| I3242_RS06700 (I3242_06705) | 1508673..1509113 | - | 441 | WP_007056380.1 | transcriptional regulator NrdR | - |
| I3242_RS06705 (I3242_06710) | 1509166..1509333 | - | 168 | WP_013582826.1 | LysM peptidoglycan-binding domain-containing protein | - |
| I3242_RS06710 (I3242_06715) | 1509482..1510243 | - | 762 | WP_013582291.1 | IS21 family transposase ISBlo2 | Transposase |
| I3242_RS06715 (I3242_06720) | 1510240..1511697 | - | 1458 | WP_013582292.1 | IS21 family transposase | - |
| I3242_RS06720 (I3242_06725) | 1512117..1512842 | + | 726 | WP_007052535.1 | transcriptional repressor LexA | - |
| I3242_RS06725 (I3242_06730) | 1513008..1513946 | + | 939 | WP_007052534.1 | cation diffusion facilitator family transporter | - |
| I3242_RS06730 (I3242_06735) | 1514088..1515050 | - | 963 | WP_007052533.1 | L-lactate dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|