MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 40194 bp
Accession: NZ_CP065031 Location: 2954602..2994795 Organism: Pectobacterium brasiliense strain F126 Replicon: chromosome
Accession: NZ_CP065031 Location: 2954602..2994795 Organism: Pectobacterium brasiliense strain F126 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F126LOC_RS13000 () | 2949935..2950843 | - | 909 | WP_039516916.1 | lipid kinase | - |
| F126LOC_RS13005 () | 2951127..2952602 | + | 1476 | WP_119870550.1 | sensor domain-containing diguanylate cyclase | - |
| F126LOC_RS13010 () | 2952685..2952852 | - | 168 | WP_010280855.1 | YqaE/Pmp3 family membrane protein | - |
| F126LOC_RS13015 () | 2953007..2953393 | + | 387 | WP_014914890.1 | lysozyme inhibitor LprI family protein | - |
| F126LOC_RS13025 () | 2953634..2954431 | + | 798 | WP_119870413.1 | DgsA anti-repressor MtfA | - |
| F126LOC_RS13035 () | 2954779..2956050 | + | 1272 | WP_119870412.1 | Prophage integrase IntA ; Integrase | Integrase |
| F126LOC_RS13040 () | 2956184..2956498 | - | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| F126LOC_RS13045 () | 2956684..2956998 | - | 315 | WP_025918866.1 | helix-turn-helix domain-containing protein | - |
| F126LOC_RS13050 () | 2957145..2957417 | + | 273 | WP_014699383.1 | helix-turn-helix domain-containing protein | - |
| F126LOC_RS13055 () | 2957832..2958749 | + | 918 | WP_119870410.1 | hypothetical protein | - |
| F126LOC_RS13060 () | 2958903..2959097 | + | 195 | WP_025918863.1 | AlpA family transcriptional regulator | - |
| F126LOC_RS13065 () | 2959114..2959698 | + | 585 | WP_119870409.1 | DUF2857 domain-containing protein | - |
| F126LOC_RS13070 () | 2959688..2959897 | + | 210 | WP_119870408.1 | TraR/DksA family transcriptional regulator | - |
| F126LOC_RS13075 () | 2960042..2961730 | - | 1689 | WP_119870407.1 | ATP-binding protein | - |
| F126LOC_RS13080 () | 2961741..2962952 | - | 1212 | WP_119870406.1 | hypothetical protein | - |
| F126LOC_RS13085 () | 2963600..2963821 | + | 222 | WP_039285692.1 | hypothetical protein | - |
| F126LOC_RS13090 () | 2963900..2964565 | + | 666 | WP_119870405.1 | Type IV secretion system protein virB1 | VF |
| F126LOC_RS13095 () | 2964562..2964843 | + | 282 | WP_086002448.1 | TrbC/VirB2 family protein | - |
| F126LOC_RS13100 () | 2964853..2967600 | + | 2748 | WP_119870404.1 | Type IV secretion system protein virB4 | VF |
| F126LOC_RS13105 () | 2967624..2968340 | + | 717 | WP_119870403.1 | type IV secretion system protein | - |
| F126LOC_RS13110 () | 2968351..2968575 | + | 225 | WP_039551199.1 | EexN family lipoprotein | - |
| F126LOC_RS13115 () | 2968587..2969627 | + | 1041 | WP_119870402.1 | type IV secretion system protein | - |
| F126LOC_RS13120 () | 2969715..2969855 | + | 141 | WP_025918851.1 | hypothetical protein | - |
| F126LOC_RS13125 () | 2969848..2970531 | + | 684 | WP_119870401.1 | type IV secretion system protein | - |
| F126LOC_RS13130 () | 2970531..2971421 | + | 891 | WP_119870400.1 | P-type conjugative transfer protein VirB9 | - |
| F126LOC_RS13135 () | 2971418..2972641 | + | 1224 | WP_119870399.1 | Type IV secretion system protein virB10 | VF |
| F126LOC_RS13140 () | 2972631..2973647 | + | 1017 | WP_119870398.1 | Type IV secretion system protein VirB11 | VF |
| F126LOC_RS13145 () | 2973691..2973993 | + | 303 | WP_119870397.1 | conjugal transfer protein | - |
| F126LOC_RS13150 () | 2974718..2976580 | + | 1863 | WP_119870396.1 | type IV secretory system conjugative DNA transfer family protein | - |
| F126LOC_RS13155 () | 2976589..2977335 | + | 747 | WP_119870395.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| F126LOC_RS13160 () | 2977532..2978074 | + | 543 | WP_119870394.1 | DUF3916 domain-containing protein | - |
| F126LOC_RS13165 () | 2978237..2979235 | - | 999 | WP_119870393.1 | hypothetical protein | - |
| F126LOC_RS13170 () | 2979659..2979973 | - | 315 | WP_119870392.1 | CcdB family protein | Toxin Detail |
| F126LOC_RS13175 () | 2979976..2980212 | - | 237 | WP_029729596.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| F126LOC_RS13180 () | 2980532..2981476 | - | 945 | WP_119870391.1 | DUF1738 domain-containing protein | - |
| F126LOC_RS13185 () | 2982241..2984550 | + | 2310 | WP_119870906.1 | TerB N-terminal domain-containing protein | - |
| F126LOC_RS13190 () | 2984554..2985867 | + | 1314 | WP_119870905.1 | ATP-binding protein | - |
| F126LOC_RS13195 () | 2985864..2988062 | + | 2199 | WP_119870904.1 | DEAD/DEAH box helicase | - |
| F126LOC_RS13200 () | 2988727..2988900 | + | 174 | WP_119870910.1 | DNA cytosine methyltransferase | - |
| F126LOC_RS13205 () | 2989070..2990668 | - | 1599 | WP_119870903.1 | TIGR04141 family sporadically distributed protein | - |
| F126LOC_RS13210 () | 2991416..2992684 | - | 1269 | WP_119870902.1 | hypothetical protein | - |
| F126LOC_RS13215 () | 2992907..2993905 | - | 999 | WP_127110943.1 | hypothetical protein | - |
| F126LOC_RS13220 () | 2994970..2995134 | + | 165 | Protein_2584 | DUF4102 domain-containing protein | - |
| F126LOC_RS13225 () | 2995679..2999713 | + | 4035 | WP_119870900.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|