MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 36024 bp
Accession: NZ_CP063773 Location: 3119230..3155253 Organism: Pectobacterium carotovorum subsp. carotovorum PCCS1 Replicon: chromosome
Accession: NZ_CP063773 Location: 3119230..3155253 Organism: Pectobacterium carotovorum subsp. carotovorum PCCS1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQ281_RS13915 () | 3114419..3115396 | - | 978 | WP_194429934.1 | DUF1852 domain-containing protein | - |
| IQ281_RS13920 () | 3115854..3116099 | + | 246 | WP_180777137.1 | YmjA family protein | - |
| IQ281_RS13925 () | 3116271..3116606 | - | 336 | WP_194429935.1 | gamma-glutamylcyclotransferase | - |
| IQ281_RS13930 () | 3116924..3118126 | + | 1203 | WP_194429936.1 | tyrosine--tRNA ligase | - |
| IQ281_RS13935 () | 3118250..3119140 | + | 891 | WP_194429937.1 | oxidoreductase | - |
| IQ281_RS13940 () | 3119492..3121105 | + | 1614 | WP_194429938.1 | restriction endonuclease subunit S | - |
| IQ281_RS13945 () | 3121109..3122761 | + | 1653 | WP_194429939.1 | AAA family ATPase | - |
| IQ281_RS13950 () | 3122764..3123687 | + | 924 | WP_194429940.1 | hypothetical protein | - |
| IQ281_RS13955 () | 3123687..3125168 | + | 1482 | WP_194429941.1 | N-6 DNA methylase | - |
| IQ281_RS13960 () | 3125760..3126707 | + | 948 | WP_194429942.1 | DUF1738 domain-containing protein | - |
| IQ281_RS13965 () | 3127027..3127263 | + | 237 | WP_194429943.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| IQ281_RS13970 () | 3127266..3127580 | + | 315 | WP_194429944.1 | CcdB family protein | Toxin Detail |
| IQ281_RS13975 () | 3127931..3128383 | - | 453 | WP_194429945.1 | Lrp/AsnC family transcriptional regulator | - |
| IQ281_RS13980 () | 3128562..3129176 | + | 615 | WP_194429946.1 | LysE family translocator | - |
| IQ281_RS13985 () | 3129424..3130224 | + | 801 | WP_194429947.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| IQ281_RS13990 () | 3130390..3131136 | - | 747 | WP_194429948.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| IQ281_RS13995 () | 3131145..3133007 | - | 1863 | WP_194429949.1 | type IV secretory system conjugative DNA transfer family protein | - |
| IQ281_RS14000 () | 3133731..3134033 | - | 303 | WP_194429950.1 | conjugal transfer protein | - |
| IQ281_RS14005 () | 3134077..3135093 | - | 1017 | WP_194429951.1 | hypothetical protein | VF |
| IQ281_RS14010 () | 3135083..3136315 | - | 1233 | WP_194429952.1 | hypothetical protein | VF |
| IQ281_RS14015 () | 3136312..3137202 | - | 891 | WP_194429953.1 | P-type conjugative transfer protein VirB9 | - |
| IQ281_RS14020 () | 3137202..3137885 | - | 684 | WP_194429954.1 | hypothetical protein | VF |
| IQ281_RS14025 () | 3137878..3138018 | - | 141 | WP_025918851.1 | hypothetical protein | - |
| IQ281_RS14030 () | 3138107..3139147 | - | 1041 | WP_194429955.1 | type IV secretion system protein | - |
| IQ281_RS14035 () | 3139160..3139384 | - | 225 | WP_052903379.1 | EexN family lipoprotein | - |
| IQ281_RS14040 () | 3139395..3140111 | - | 717 | WP_194429956.1 | type IV secretion system protein | - |
| IQ281_RS14045 () | 3140135..3142882 | - | 2748 | WP_194429957.1 | hypothetical protein | VF |
| IQ281_RS14050 () | 3142892..3143173 | - | 282 | WP_194429958.1 | TrbC/VirB2 family protein | - |
| IQ281_RS14055 () | 3143170..3143835 | - | 666 | WP_194429959.1 | hypothetical protein | VF |
| IQ281_RS14060 () | 3143915..3144136 | - | 222 | WP_194429960.1 | hypothetical protein | - |
| IQ281_RS14065 () | 3144862..3146163 | + | 1302 | WP_194429961.1 | hypothetical protein | - |
| IQ281_RS14070 () | 3146533..3147270 | + | 738 | WP_194429962.1 | hypothetical protein | - |
| IQ281_RS14075 () | 3147626..3149350 | - | 1725 | WP_194429963.1 | retron Ec67 family RNA-directed DNA polymerase/endonuclease | - |
| IQ281_RS14080 () | 3149959..3150168 | - | 210 | WP_039302513.1 | TraR/DksA family transcriptional regulator | - |
| IQ281_RS14085 () | 3150158..3150742 | - | 585 | WP_180788606.1 | DUF2857 domain-containing protein | - |
| IQ281_RS14090 () | 3150759..3150953 | - | 195 | WP_025918863.1 | AlpA family transcriptional regulator | - |
| IQ281_RS14095 () | 3151107..3152021 | - | 915 | WP_180788605.1 | hypothetical protein | - |
| IQ281_RS14100 () | 3152438..3152710 | - | 273 | WP_014699383.1 | helix-turn-helix domain-containing protein | - |
| IQ281_RS14105 () | 3152857..3153171 | + | 315 | WP_025918866.1 | helix-turn-helix domain-containing protein | - |
| IQ281_RS14110 () | 3153356..3153670 | + | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| IQ281_RS14115 () | 3153805..3155076 | - | 1272 | WP_194429964.1 | hypothetical protein ; Integrase | Integrase |
| IQ281_RS14125 () | 3155424..3156221 | - | 798 | WP_194429965.1 | DgsA anti-repressor MtfA | - |
| IQ281_RS14135 () | 3156463..3156849 | - | 387 | WP_194429966.1 | lysozyme inhibitor LprI family protein | - |
| IQ281_RS14140 () | 3157026..3157193 | + | 168 | WP_180777106.1 | YqaE/Pmp3 family membrane protein | - |
| IQ281_RS14145 () | 3157278..3158699 | - | 1422 | WP_181829558.1 | DASS family sodium-coupled anion symporter | - |
| IQ281_RS14150 () | 3158844..3160196 | - | 1353 | WP_194429967.1 | 3-carboxy-cis,cis-muconate cycloisomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|