MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 117720 bp
Accession: NZ_CP063456 Location: 1426502..1544221 Organism: Pseudomonas shirazica strain A28 Replicon: chromosome
Accession: NZ_CP063456 Location: 1426502..1544221 Organism: Pseudomonas shirazica strain A28 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMX18_RS06445 | 1421785..1422171 | + | 387 | WP_015271039.1 | DUF488 family protein | - |
| IMX18_RS06450 | 1422314..1422745 | + | 432 | WP_015271038.1 | GNAT family N-acetyltransferase | - |
| IMX18_RS06455 | 1422863..1423252 | + | 390 | WP_054572496.1 | helix-turn-helix domain-containing protein | - |
| IMX18_RS06460 | 1423316..1423954 | + | 639 | WP_015271036.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| IMX18_RS06465 | 1423961..1425784 | + | 1824 | WP_013973365.1 | excinuclease ABC subunit UvrC | - |
| IMX18_RS06470 | 1425817..1426377 | + | 561 | WP_039613116.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| IMX18_RS06480 | 1426744..1428687 | + | 1944 | WP_217190181.1 | N-acetylmuramoyl-L-alanine amidase AmiA ; Integrase | Integrase |
| IMX18_RS06485 | 1428754..1429395 | - | 642 | WP_012614047.1 | LysR substrate-binding domain-containing protein | - |
| IMX18_RS06490 | 1429500..1429793 | + | 294 | WP_024082527.1 | helix-turn-helix transcriptional regulator | - |
| IMX18_RS06495 | 1429820..1430713 | - | 894 | WP_012614048.1 | LysR family transcriptional regulator | - |
| IMX18_RS06500 | 1431034..1431603 | - | 570 | Protein_1283 | VOC family protein | - |
| IMX18_RS06505 | 1431629..1431847 | + | 219 | WP_017511446.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| IMX18_RS06510 | 1431948..1432142 | + | 195 | WP_012614049.1 | heavy-metal-associated domain-containing protein | - |
| IMX18_RS27935 | 1432217..1432585 | - | 369 | WP_223656233.1 | hypothetical protein | - |
| IMX18_RS27940 | 1432681..1432953 | - | 273 | WP_012614050.1 | glutaredoxin | - |
| IMX18_RS06520 | 1433177..1433515 | - | 339 | WP_012614051.1 | ISC system 2Fe-2S type ferredoxin | - |
| IMX18_RS06525 | 1433531..1434010 | - | 480 | WP_012614052.1 | Cu(I)-responsive transcriptional regulator | - |
| IMX18_RS06530 | 1434026..1436521 | - | 2496 | WP_017511447.1 | heavy metal translocating P-type ATPase | - |
| IMX18_RS06535 | 1436757..1437113 | + | 357 | WP_015912826.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| IMX18_RS06540 | 1437223..1438650 | - | 1428 | WP_015912827.1 | dihydrolipoyl dehydrogenase | - |
| IMX18_RS06545 | 1438756..1439154 | - | 399 | WP_015912828.1 | hypothetical protein | - |
| IMX18_RS06550 | 1439208..1442354 | - | 3147 | WP_012614056.1 | efflux RND transporter permease subunit | - |
| IMX18_RS06555 | 1442368..1443483 | - | 1116 | WP_003821159.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| IMX18_RS06560 | 1443480..1444031 | - | 552 | WP_015912829.1 | hypothetical protein | - |
| IMX18_RS06565 | 1444066..1445277 | - | 1212 | WP_223656232.1 | TolC family protein | - |
| IMX18_RS06570 | 1445677..1445934 | + | 258 | WP_003821156.1 | metal-sensing transcriptional repressor | - |
| IMX18_RS06575 | 1445944..1447254 | + | 1311 | WP_003821155.1 | MFS transporter | - |
| IMX18_RS06580 | 1447388..1448410 | + | 1023 | WP_003821153.1 | cation diffusion facilitator family transporter | - |
| IMX18_RS06585 | 1448454..1448831 | + | 378 | WP_003821152.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| IMX18_RS06590 | 1449061..1449630 | + | 570 | WP_034018378.1 | DUF4148 domain-containing protein | - |
| IMX18_RS06595 | 1449797..1452511 | + | 2715 | WP_012614060.1 | heavy metal translocating P-type ATPase | - |
| IMX18_RS06600 | 1452623..1453930 | + | 1308 | WP_003821145.1 | efflux RND transporter periplasmic adaptor subunit | - |
| IMX18_RS06605 | 1453927..1457103 | + | 3177 | WP_012614062.1 | efflux RND transporter permease subunit | - |
| IMX18_RS06610 | 1457124..1458629 | + | 1506 | WP_003821143.1 | efflux transporter outer membrane subunit | - |
| IMX18_RS06615 | 1458679..1459065 | + | 387 | WP_015912830.1 | MerR family transcriptional regulator | - |
| IMX18_RS06620 | 1459145..1460275 | + | 1131 | WP_049285238.1 | MFS transporter | - |
| IMX18_RS06625 | 1460419..1463730 | + | 3312 | WP_233454300.1 | molybdopterin-dependent oxidoreductase | - |
| IMX18_RS06630 | 1464536..1464537 | - | 2 | WP_161789755.1 | IS630 family transposase | - |
| IMX18_RS06635 | 1465110..1466342 | + | 1233 | WP_121314803.1 | efflux RND transporter periplasmic adaptor subunit | - |
| IMX18_RS06640 | 1466339..1468075 | + | 1737 | Protein_1312 | efflux RND transporter permease subunit | - |
| IMX18_RS06645 | 1468177..1468872 | + | 696 | WP_003821135.1 | FadR/GntR family transcriptional regulator | - |
| IMX18_RS06650 | 1469028..1469438 | - | 411 | WP_012614065.1 | hypothetical protein | - |
| IMX18_RS06655 | 1469619..1470320 | + | 702 | WP_003821133.1 | DUF305 domain-containing protein | - |
| IMX18_RS06660 | 1470331..1470588 | + | 258 | WP_003821132.1 | glutaredoxin family protein | - |
| IMX18_RS06665 | 1470763..1471635 | + | 873 | WP_003821131.1 | 3-deoxy-8-phosphooctulonate synthase | - |
| IMX18_RS06670 | 1471686..1473557 | - | 1872 | WP_003821130.1 | MobH family relaxase | - |
| IMX18_RS06675 | 1473874..1474500 | + | 627 | WP_003821129.1 | integrase | - |
| IMX18_RS06680 | 1474513..1475145 | + | 633 | WP_012614066.1 | RES family NAD+ phosphorylase | - |
| IMX18_RS06685 | 1475230..1475595 | + | 366 | WP_003821127.1 | DUF3742 family protein | - |
| IMX18_RS06690 | 1475607..1477127 | - | 1521 | WP_003821126.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| IMX18_RS06695 | 1477143..1477514 | - | 372 | WP_003821125.1 | hypothetical protein | - |
| IMX18_RS06700 | 1477511..1478908 | - | 1398 | WP_122048404.1 | integrating conjugative element protein | - |
| IMX18_RS06705 | 1478918..1479865 | - | 948 | WP_012614067.1 | TIGR03756 family integrating conjugative element protein | - |
| IMX18_RS06710 | 1479862..1480308 | - | 447 | WP_003821119.1 | TIGR03757 family integrating conjugative element protein | - |
| IMX18_RS06715 | 1480471..1480965 | - | 495 | WP_003821118.1 | JAB domain-containing protein | - |
| IMX18_RS06720 | 1481148..1481933 | - | 786 | WP_012614069.1 | thioredoxin domain-containing protein | - |
| IMX18_RS06725 | 1481947..1484832 | - | 2886 | WP_012614070.1 | conjugative transfer ATPase | - |
| IMX18_RS06730 | 1484832..1485272 | - | 441 | WP_003149753.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| IMX18_RS06735 | 1485253..1486671 | - | 1419 | WP_004350605.1 | TIGR03752 family integrating conjugative element protein | - |
| IMX18_RS06740 | 1486661..1487572 | - | 912 | WP_004350604.1 | TIGR03749 family integrating conjugative element protein | - |
| IMX18_RS06745 | 1487569..1488261 | - | 693 | WP_012614071.1 | TIGR03746 family integrating conjugative element protein | - |
| IMX18_RS06750 | 1488258..1488668 | - | 411 | WP_003821108.1 | TIGR03750 family conjugal transfer protein | - |
| IMX18_RS06755 | 1488681..1489040 | - | 360 | WP_003153634.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| IMX18_RS06760 | 1489057..1489290 | - | 234 | WP_003050225.1 | TIGR03758 family integrating conjugative element protein | - |
| IMX18_RS06765 | 1489287..1489670 | - | 384 | WP_003090167.1 | RAQPRD family integrative conjugative element protein | - |
| IMX18_RS06770 | 1489874..1490344 | + | 471 | WP_003050245.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| IMX18_RS06775 | 1490341..1490916 | + | 576 | WP_003153636.1 | PIN domain-containing protein | Toxin Detail |
| IMX18_RS06780 | 1490934..1491848 | + | 915 | WP_003050256.1 | AAA family ATPase | - |
| IMX18_RS06785 | 1491845..1492315 | + | 471 | WP_003153638.1 | type III CBASS phage resistance system CD-NTase-associated protein Cap8 | - |
| IMX18_RS06790 | 1492312..1492812 | + | 501 | WP_003090159.1 | type III CBASS phage resistance system CD-NTase-associated protein Cap7 | - |
| IMX18_RS06795 | 1492812..1493714 | + | 903 | WP_003153640.1 | CBASS oligonucleotide cyclase | - |
| IMX18_RS06800 | 1493753..1494478 | + | 726 | WP_003050273.1 | CBASS effector endonuclease NucC | - |
| IMX18_RS06805 | 1494488..1497112 | + | 2625 | WP_003153642.1 | AAA family ATPase | - |
| IMX18_RS06810 | 1497153..1497902 | - | 750 | WP_003153644.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| IMX18_RS06815 | 1497899..1500088 | - | 2190 | WP_004350569.1 | type IV conjugative transfer system coupling protein TraD | - |
| IMX18_RS06820 | 1500093..1500641 | - | 549 | WP_003109779.1 | integrating conjugative element protein | - |
| IMX18_RS06825 | 1500638..1501228 | - | 591 | WP_003109780.1 | transglycosylase SLT domain-containing protein | - |
| IMX18_RS06830 | 1501210..1501947 | - | 738 | WP_003098886.1 | TIGR03759 family integrating conjugative element protein | - |
| IMX18_RS06835 | 1501960..1502604 | - | 645 | WP_003098888.1 | hypothetical protein | - |
| IMX18_RS06840 | 1502601..1503200 | - | 600 | WP_003098890.1 | PilL N-terminal domain-containing protein | - |
| IMX18_RS06845 | 1503339..1505618 | - | 2280 | WP_004350563.1 | helicase-related protein | - |
| IMX18_RS06850 | 1505755..1506060 | - | 306 | WP_003116817.1 | hypothetical protein | - |
| IMX18_RS06855 | 1506150..1506470 | - | 321 | WP_003116818.1 | hypothetical protein | - |
| IMX18_RS06860 | 1506521..1507630 | - | 1110 | WP_217190180.1 | DUF6094 domain-containing protein | - |
| IMX18_RS06865 | 1507695..1508342 | - | 648 | WP_003116820.1 | hypothetical protein | - |
| IMX18_RS06870 | 1508419..1508679 | - | 261 | WP_003090124.1 | hypothetical protein | - |
| IMX18_RS06875 | 1508696..1509103 | - | 408 | WP_003116821.1 | hypothetical protein | - |
| IMX18_RS06880 | 1509208..1509549 | - | 342 | WP_003116822.1 | hypothetical protein | - |
| IMX18_RS06885 | 1509644..1510333 | - | 690 | WP_003116823.1 | DUF3275 family protein | - |
| IMX18_RS06890 | 1510428..1511255 | - | 828 | WP_003116824.1 | DUF932 domain-containing protein | - |
| IMX18_RS06895 | 1511401..1512306 | - | 906 | WP_003116825.1 | DUF3577 domain-containing protein | - |
| IMX18_RS06900 | 1512617..1512901 | - | 285 | WP_003098923.1 | hypothetical protein | - |
| IMX18_RS06905 | 1513209..1513493 | - | 285 | WP_031629745.1 | DUF3085 domain-containing protein | - |
| IMX18_RS06910 | 1513539..1514530 | - | 992 | Protein_1366 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| IMX18_RS06915 | 1514555..1516243 | - | 1689 | WP_003098932.1 | mercury(II) reductase | - |
| IMX18_RS06920 | 1516254..1516541 | - | 288 | WP_003116826.1 | mercury resistance system periplasmic binding protein MerP | - |
| IMX18_RS06925 | 1516554..1516904 | - | 351 | WP_003116827.1 | mercuric ion transporter MerT | - |
| IMX18_RS06930 | 1516976..1517383 | + | 408 | WP_003098939.1 | Hg(II)-responsive transcriptional regulator | - |
| IMX18_RS06940 | 1517645..1518469 | - | 825 | WP_003098941.1 | hypothetical protein | - |
| IMX18_RS06945 | 1518758..1519036 | - | 279 | WP_003116828.1 | hypothetical protein | - |
| IMX18_RS06950 | 1519134..1519871 | - | 738 | WP_003116829.1 | hypothetical protein | - |
| IMX18_RS06955 | 1519955..1520641 | - | 687 | WP_003116830.1 | hypothetical protein | - |
| IMX18_RS06960 | 1520824..1521216 | - | 393 | WP_003116832.1 | hypothetical protein | - |
| IMX18_RS06965 | 1521238..1521450 | - | 213 | WP_003116833.1 | hypothetical protein | - |
| IMX18_RS06970 | 1521788..1522093 | - | 306 | WP_223656317.1 | hypothetical protein | - |
| IMX18_RS06975 | 1522436..1522936 | - | 501 | WP_003098955.1 | signal peptidase II | - |
| IMX18_RS06980 | 1522940..1525852 | - | 2913 | WP_003098961.1 | heavy metal translocating P-type ATPase | - |
| IMX18_RS06985 | 1525944..1526342 | + | 399 | WP_003098965.1 | Cd(II)/Pb(II)-responsive transcriptional regulator | - |
| IMX18_RS27950 | 1526797..1527000 | - | 204 | WP_023657334.1 | hypothetical protein | - |
| IMX18_RS06995 | 1527418..1528053 | + | 636 | WP_003098972.1 | cation transporter | - |
| IMX18_RS28165 | 1528796..1528930 | - | 135 | WP_228777765.1 | hypothetical protein | - |
| IMX18_RS07000 | 1528870..1530807 | - | 1938 | Protein_1384 | DNA topoisomerase III | - |
| IMX18_RS07005 | 1531091..1531531 | - | 441 | WP_003098976.1 | single-stranded DNA-binding protein | - |
| IMX18_RS07010 | 1531605..1532132 | - | 528 | WP_049323458.1 | DUF3158 family protein | - |
| IMX18_RS07015 | 1532129..1532908 | - | 780 | WP_011871436.1 | TIGR03761 family integrating conjugative element protein | - |
| IMX18_RS07020 | 1533240..1534490 | - | 1251 | WP_011871435.1 | STY4528 family pathogenicity island replication protein | - |
| IMX18_RS07025 | 1534494..1535054 | - | 561 | WP_009876573.1 | DUF2857 domain-containing protein | - |
| IMX18_RS07030 | 1535070..1536734 | - | 1665 | WP_009876572.1 | ParB family protein | - |
| IMX18_RS07035 | 1536727..1536987 | - | 261 | WP_009876571.1 | hypothetical protein | - |
| IMX18_RS07040 | 1536971..1537846 | - | 876 | WP_011871433.1 | ParA family protein | - |
| IMX18_RS07045 | 1537889..1538101 | - | 213 | WP_009876569.1 | AlpA family transcriptional regulator | - |
| IMX18_RS07050 | 1538220..1538966 | - | 747 | WP_011871432.1 | hypothetical protein | - |
| IMX18_RS07055 | 1539692..1540015 | + | 324 | WP_009876567.1 | helix-turn-helix domain-containing protein | - |
| IMX18_RS07060 | 1540020..1540514 | + | 495 | WP_009876566.1 | arsenate reductase ArsC | - |
| IMX18_RS07065 | 1540525..1541595 | + | 1071 | WP_011871431.1 | ACR3 family arsenite efflux transporter | - |
| IMX18_RS07070 | 1541598..1542830 | + | 1233 | WP_009876564.1 | MFS transporter | - |
| IMX18_RS07075 | 1542827..1543249 | + | 423 | WP_009876563.1 | arsenate reductase (glutaredoxin) | - |
| IMX18_RS07080 | 1543242..1543964 | + | 723 | WP_011871430.1 | arsenical resistance protein ArsH | - |
| IMX18_RS28210 | 1544517..1544821 | - | 305 | Protein_1401 | type VI secretion system tip protein VgrG | - |
| IMX18_RS07085 | 1545430..1546533 | - | 1104 | Protein_1402 | hypothetical protein | - |
| IMX18_RS07090 | 1546526..1548115 | - | 1590 | WP_085720513.1 | PAS domain-containing methyl-accepting chemotaxis protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|