MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 89201 bp
Accession: NZ_CP063392 Location: 5318213..5407413 Organism: Pseudomonas aeruginosa strain ST167_d68blood1 Replicon: chromosome
Accession: NZ_CP063392 Location: 5318213..5407413 Organism: Pseudomonas aeruginosa strain ST167_d68blood1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IPV42_RS24565 (IPV42_24565) | 5313785..5317984 | + | 4200 | WP_003455748.1 | two-partner secretion system exoprotein TpsA4 | - |
| IPV42_RS24575 (IPV42_24575) | 5318350..5319216 | + | 867 | WP_003111785.1 | ParA family protein | - |
| IPV42_RS24580 (IPV42_24580) | 5319218..5319955 | + | 738 | WP_004347984.1 | hypothetical protein | - |
| IPV42_RS24585 (IPV42_24585) | 5319952..5320449 | + | 498 | WP_003111783.1 | hypothetical protein | - |
| IPV42_RS24590 (IPV42_24590) | 5320446..5321276 | + | 831 | WP_004352853.1 | hypothetical protein | - |
| IPV42_RS24595 (IPV42_24595) | 5321273..5321959 | + | 687 | WP_003122071.1 | hypothetical protein | - |
| IPV42_RS24600 (IPV42_24600) | 5321959..5322660 | + | 702 | WP_004347982.1 | DUF2786 domain-containing protein | - |
| IPV42_RS24605 (IPV42_24605) | 5322657..5323364 | + | 708 | WP_004352852.1 | HNH endonuclease signature motif containing protein | - |
| IPV42_RS24610 (IPV42_24610) | 5323348..5323566 | + | 219 | WP_003122068.1 | hypothetical protein | - |
| IPV42_RS24615 (IPV42_24615) | 5323563..5324906 | + | 1344 | WP_019486079.1 | replicative DNA helicase | - |
| IPV42_RS24620 (IPV42_24620) | 5325345..5325791 | - | 447 | WP_031631896.1 | hypothetical protein | - |
| IPV42_RS24625 (IPV42_24625) | 5325969..5326154 | + | 186 | WP_023083214.1 | hypothetical protein | - |
| IPV42_RS24630 (IPV42_24630) | 5326144..5326671 | + | 528 | WP_004352849.1 | hypothetical protein | - |
| IPV42_RS24635 (IPV42_24635) | 5326668..5326925 | + | 258 | WP_004352848.1 | hypothetical protein | - |
| IPV42_RS24640 (IPV42_24640) | 5326918..5327160 | + | 243 | WP_023083215.1 | hypothetical protein | - |
| IPV42_RS24645 (IPV42_24645) | 5327153..5327386 | + | 234 | WP_003103841.1 | hypothetical protein | - |
| IPV42_RS24650 (IPV42_24650) | 5327386..5328402 | + | 1017 | WP_004352847.1 | nucleoid-associated protein YejK | - |
| IPV42_RS24655 (IPV42_24655) | 5328405..5328659 | + | 255 | WP_009316384.1 | Arc family DNA-binding protein | - |
| IPV42_RS24660 (IPV42_24660) | 5328656..5330392 | + | 1737 | WP_004352845.1 | ParB family protein | - |
| IPV42_RS24665 (IPV42_24665) | 5330420..5331187 | + | 768 | WP_004352844.1 | DUF2857 domain-containing protein | - |
| IPV42_RS24670 (IPV42_24670) | 5331184..5332455 | + | 1272 | WP_023083217.1 | STY4528 family pathogenicity island replication protein | - |
| IPV42_RS24675 | 5332452..5333249 | + | 798 | WP_235597565.1 | hypothetical protein | - |
| IPV42_RS24680 (IPV42_24680) | 5333406..5334134 | + | 729 | WP_004352842.1 | TIGR03761 family integrating conjugative element protein | - |
| IPV42_RS24685 (IPV42_24685) | 5334140..5334688 | + | 549 | WP_004352841.1 | DUF3158 family protein | - |
| IPV42_RS24690 (IPV42_24690) | 5334735..5335574 | + | 840 | WP_003105750.1 | Rha family transcriptional regulator | - |
| IPV42_RS24695 (IPV42_24695) | 5335604..5336092 | + | 489 | WP_004352840.1 | single-stranded DNA-binding protein | - |
| IPV42_RS24700 (IPV42_24700) | 5336248..5336415 | + | 168 | WP_128729268.1 | CrpP family ICE-associated protein | - |
| IPV42_RS24705 (IPV42_24705) | 5336481..5336699 | - | 219 | WP_023083218.1 | hypothetical protein | - |
| IPV42_RS24710 (IPV42_24710) | 5336713..5336910 | - | 198 | WP_023083219.1 | hypothetical protein | - |
| IPV42_RS24715 (IPV42_24715) | 5336926..5337336 | - | 411 | WP_003134109.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| IPV42_RS24720 (IPV42_24720) | 5337336..5337566 | - | 231 | WP_031634724.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| IPV42_RS24725 (IPV42_24725) | 5337822..5339741 | + | 1920 | WP_004352838.1 | type I DNA topoisomerase | - |
| IPV42_RS24730 (IPV42_24730) | 5340049..5340258 | + | 210 | WP_003105733.1 | cold-shock protein | - |
| IPV42_RS24735 (IPV42_24735) | 5340479..5342368 | + | 1890 | WP_003105732.1 | hypothetical protein | - |
| IPV42_RS24740 (IPV42_24740) | 5342365..5344338 | + | 1974 | WP_003105731.1 | DEAD/DEAH box helicase | - |
| IPV42_RS24745 (IPV42_24745) | 5344460..5345242 | + | 783 | WP_004352836.1 | phage Gp37/Gp68 family protein | - |
| IPV42_RS24750 (IPV42_24750) | 5345275..5346528 | + | 1254 | WP_004352835.1 | three-Cys-motif partner protein TcmP | - |
| IPV42_RS24755 (IPV42_24755) | 5346702..5347826 | + | 1125 | WP_003099755.1 | hypothetical protein | VF |
| IPV42_RS24760 (IPV42_24760) | 5347826..5349535 | + | 1710 | WP_004352834.1 | hypothetical protein | VF |
| IPV42_RS24765 (IPV42_24765) | 5349539..5350864 | + | 1326 | WP_004352832.1 | type 4b pilus protein PilO2 | - |
| IPV42_RS24770 (IPV42_24770) | 5350854..5351387 | + | 534 | WP_004352829.1 | type IV pilus biogenesis protein PilP | - |
| IPV42_RS24775 (IPV42_24775) | 5351396..5352976 | + | 1581 | WP_003123334.1 | hypothetical protein | VF |
| IPV42_RS24780 (IPV42_24780) | 5352976..5354055 | + | 1080 | WP_003123335.1 | hypothetical protein | VF |
| IPV42_RS24785 (IPV42_24785) | 5354077..5354607 | + | 531 | WP_004352827.1 | hypothetical protein | VF |
| IPV42_RS24790 (IPV42_24790) | 5354604..5355545 | + | 942 | WP_004352826.1 | ATPase, T2SS/T4P/T4SS family | - |
| IPV42_RS24795 (IPV42_24795) | 5355550..5356878 | + | 1329 | WP_004352824.1 | hypothetical protein | VF |
| IPV42_RS24800 (IPV42_24800) | 5356907..5357344 | + | 438 | WP_004352822.1 | hypothetical protein | VF |
| IPV42_RS24805 | 5358266..5358655 | + | 390 | WP_004352820.1 | hypothetical protein | - |
| IPV42_RS24810 (IPV42_24810) | 5358730..5358906 | + | 177 | WP_015503587.1 | hypothetical protein | - |
| IPV42_RS30750 | 5358908..5359042 | + | 135 | WP_003099783.1 | hypothetical protein | - |
| IPV42_RS24815 (IPV42_24815) | 5359367..5359846 | + | 480 | WP_003117056.1 | STY4534 family ICE replication protein | - |
| IPV42_RS24820 (IPV42_24820) | 5359984..5360142 | + | 159 | WP_003109368.1 | hypothetical protein | - |
| IPV42_RS24825 (IPV42_24825) | 5360216..5360413 | + | 198 | WP_015503588.1 | hypothetical protein | - |
| IPV42_RS24830 (IPV42_24830) | 5360898..5361605 | + | 708 | WP_004352808.1 | hypothetical protein | - |
| IPV42_RS24835 (IPV42_24835) | 5361841..5362191 | + | 351 | WP_004347949.1 | hypothetical protein | - |
| IPV42_RS24840 (IPV42_24840) | 5362248..5362859 | + | 612 | Protein_4921 | DUF3275 family protein | - |
| IPV42_RS24845 (IPV42_24845) | 5363142..5363504 | + | 363 | WP_003117061.1 | hypothetical protein | - |
| IPV42_RS24850 (IPV42_24850) | 5363572..5363826 | + | 255 | WP_003117062.1 | hypothetical protein | - |
| IPV42_RS24855 (IPV42_24855) | 5363919..5364524 | + | 606 | WP_003125296.1 | hypothetical protein | - |
| IPV42_RS24860 (IPV42_24860) | 5364554..5365999 | + | 1446 | WP_003125297.1 | DUF6094 domain-containing protein | - |
| IPV42_RS24865 (IPV42_24865) | 5366104..5368353 | + | 2250 | WP_023083221.1 | DEAD/DEAH box helicase | - |
| IPV42_RS24870 (IPV42_24870) | 5368378..5368761 | - | 384 | WP_123789178.1 | hypothetical protein | - |
| IPV42_RS24875 (IPV42_24875) | 5368967..5369260 | + | 294 | WP_021264362.1 | IS3 family transposase ISCARN64 | Transposase |
| IPV42_RS24880 (IPV42_24880) | 5369257..5370123 | + | 867 | WP_004352797.1 | IS3 family transposase ISPosp5 | Transposase |
| IPV42_RS24885 (IPV42_24885) | 5370383..5371075 | + | 693 | WP_004352794.1 | hypothetical protein | - |
| IPV42_RS24890 (IPV42_24890) | 5371086..5371841 | + | 756 | WP_003099814.1 | TIGR03759 family integrating conjugative element protein | - |
| IPV42_RS24895 (IPV42_24895) | 5371826..5372407 | + | 582 | WP_003123352.1 | hypothetical protein | VF |
| IPV42_RS24900 (IPV42_24900) | 5372404..5372904 | + | 501 | WP_004352788.1 | integrating conjugative element protein | - |
| IPV42_RS24905 (IPV42_24905) | 5372913..5373182 | + | 270 | WP_003099820.1 | hypothetical protein | - |
| IPV42_RS24910 (IPV42_24910) | 5373186..5375417 | + | 2232 | WP_003159694.1 | type IV conjugative transfer system coupling protein TraD | - |
| IPV42_RS24915 (IPV42_24915) | 5375417..5376163 | + | 747 | WP_023083223.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| IPV42_RS24920 (IPV42_24920) | 5376181..5376672 | + | 492 | WP_031631905.1 | hypothetical protein | - |
| IPV42_RS24925 (IPV42_24925) | 5376913..5378394 | + | 1482 | WP_003109390.1 | UvrD-helicase domain-containing protein | - |
| IPV42_RS24930 (IPV42_24930) | 5378526..5379635 | + | 1110 | WP_003125327.1 | hypothetical protein | - |
| IPV42_RS24935 (IPV42_24935) | 5379680..5379946 | - | 267 | WP_223703940.1 | DUF2845 domain-containing protein | - |
| IPV42_RS24940 (IPV42_24940) | 5380164..5380463 | + | 300 | WP_003125328.1 | hypothetical protein | - |
| IPV42_RS24945 (IPV42_24945) | 5380557..5380895 | + | 339 | WP_016561610.1 | RAQPRD family integrative conjugative element protein | - |
| IPV42_RS24950 (IPV42_24950) | 5380892..5381131 | + | 240 | WP_003125330.1 | TIGR03758 family integrating conjugative element protein | - |
| IPV42_RS24955 (IPV42_24955) | 5381149..5381505 | + | 357 | WP_003159691.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| IPV42_RS24960 (IPV42_24960) | 5381516..5381902 | + | 387 | WP_003125333.1 | TIGR03750 family conjugal transfer protein | - |
| IPV42_RS24965 (IPV42_24965) | 5381899..5382558 | + | 660 | WP_003158155.1 | TIGR03746 family integrating conjugative element protein | - |
| IPV42_RS24970 (IPV42_24970) | 5382555..5383439 | + | 885 | WP_003125336.1 | TIGR03749 family integrating conjugative element protein | - |
| IPV42_RS24975 (IPV42_24975) | 5383423..5384928 | + | 1506 | WP_243496775.1 | TIGR03752 family integrating conjugative element protein | - |
| IPV42_RS24980 (IPV42_24980) | 5384906..5385349 | + | 444 | WP_023083781.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| IPV42_RS24985 (IPV42_24985) | 5385349..5388291 | + | 2943 | WP_023083782.1 | conjugative transfer ATPase | - |
| IPV42_RS24990 (IPV42_24990) | 5388288..5388572 | + | 285 | WP_003086159.1 | hypothetical protein | - |
| IPV42_RS24995 (IPV42_24995) | 5388569..5389228 | + | 660 | WP_019484424.1 | DsbA family protein | - |
| IPV42_RS25000 (IPV42_25000) | 5389225..5389443 | - | 219 | WP_019484423.1 | hypothetical protein | - |
| IPV42_RS25005 (IPV42_25005) | 5391584..5392015 | + | 432 | WP_023083783.1 | TIGR03757 family integrating conjugative element protein | - |
| IPV42_RS25010 (IPV42_25010) | 5392015..5392953 | + | 939 | WP_019484421.1 | TIGR03756 family integrating conjugative element protein | - |
| IPV42_RS25015 (IPV42_25015) | 5392971..5394353 | + | 1383 | WP_023083784.1 | integrating conjugative element protein | - |
| IPV42_RS25020 (IPV42_25020) | 5394353..5394700 | + | 348 | WP_016851629.1 | hypothetical protein | - |
| IPV42_RS25025 (IPV42_25025) | 5394697..5396211 | + | 1515 | WP_023083785.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| IPV42_RS25030 (IPV42_25030) | 5396268..5396606 | - | 339 | WP_023083786.1 | hypothetical protein | - |
| IPV42_RS25035 (IPV42_25035) | 5396725..5396997 | + | 273 | WP_023083787.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| IPV42_RS25040 (IPV42_25040) | 5397001..5397351 | + | 351 | WP_023083788.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| IPV42_RS25045 (IPV42_25045) | 5397762..5400221 | - | 2460 | WP_023083789.1 | ATP-binding protein | - |
| IPV42_RS25050 (IPV42_25050) | 5400509..5402236 | - | 1728 | WP_023083790.1 | ATP-binding protein | - |
| IPV42_RS25055 (IPV42_25055) | 5402247..5403260 | - | 1014 | WP_023083791.1 | SIR2 family protein | - |
| IPV42_RS25060 (IPV42_25060) | 5403802..5405721 | + | 1920 | WP_023083792.1 | MobH family relaxase | - |
| IPV42_RS25065 (IPV42_25065) | 5405718..5406998 | + | 1281 | WP_023083793.1 | hypothetical protein ; Integrase | Integrase |
| IPV42_RS25085 (IPV42_25085) | 5407851..5410415 | - | 2565 | WP_003145976.1 | ATP-dependent chaperone ClpB | - |
| IPV42_RS25090 (IPV42_25090) | 5410571..5411299 | - | 729 | WP_023086644.1 | peptidoglycan editing factor PgeF | - |
| IPV42_RS25095 (IPV42_25095) | 5411296..5412258 | - | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|