MGE detailed information
MGE type: Prophage MGE length: 56275 bp
Accession: NZ_CP060933 Location: 894237..950511 Organism: Escherichia coli strain EC12 Replicon: chromosome
Accession: NZ_CP060933 Location: 894237..950511 Organism: Escherichia coli strain EC12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9199_RS04385 (889386) | 889386..892478 | - | 3093 | WP_001082882.1 | beta-galactosidase subunit alpha | - |
| H9199_RS04390 (892661) | 892661..893644 | - | 984 | WP_000212470.1 | transcriptional regulator EbgR | - |
| H9199_RS04395 (893863) | 893863..894195 | + | 333 | WP_000450589.1 | tRNA-binding protein | - |
| H9199_RS04400 (894237) | 894237..895616 | - | 1380 | WP_001297164.1 | Putrescine aminotransferase | VF |
| H9199_RS04405 (896034) | 896034..897554 | + | 1521 | WP_000094682.1 | Aerotaxis receptor | VF |
| H9199_RS04410 (897708) | 897708..898331 | - | 624 | WP_000018003.1 | DNA-binding transcriptional regulator NfeR | - |
| H9199_RS04415 (898608) | 898608..899372 | + | 765 | WP_001065895.1 | NADPH-dependent ferric chelate reductase NfeF | - |
| H9199_RS04420 (899669) | 899669..900985 | + | 1317 | WP_000290290.1 | Prophage integrase IntA ; Integrase | Integrase |
| H9199_RS04425 (901115) | 901115..901711 | + | 597 | WP_000268404.1 | hypothetical protein | - |
| H9199_RS04430 (901794) | 901794..903398 | - | 1605 | WP_000256688.1 | hypothetical protein | - |
| H9199_RS04435 (904178) | 904178..904405 | + | 228 | WP_000265818.1 | AlpA family phage regulatory protein | - |
| H9199_RS04440 (904468) | 904468..905214 | + | 747 | WP_024201514.1 | hypothetical protein | - |
| H9199_RS04445 (905436) | 905436..905996 | + | 561 | WP_000135718.1 | hypothetical protein | - |
| H9199_RS04450 (906378) | 906378..906992 | + | 615 | WP_000628304.1 | inovirus Gp2 family protein | - |
| H9199_RS04455 (907020) | 907020..907586 | + | 567 | WP_000287905.1 | inovirus-type Gp2 protein | - |
| H9199_RS04465 (907793) | 907793..908779 | - | 987 | WP_001354443.1 | IS3 family transposase IS2 | Transposase |
| H9199_RS04470 (908859) | 908859..909563 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| H9199_RS04475 (909949) | 909949..910365 | + | 417 | WP_014839980.1 | Glutathione transferase FosA | ARG |
| H9199_RS04480 (910370) | 910370..910888 | - | 519 | WP_014839979.1 | FidL-like protein | - |
| H9199_RS04485 (910888) | 910888..911676 | - | 789 | WP_014839978.1 | winged helix-turn-helix domain-containing protein | - |
| H9199_RS04490 (911696) | 911696..912121 | - | 426 | Protein_868 | TetR/AcrR family transcriptional regulator | - |
| H9199_RS04495 (912176) | 912176..912880 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| H9199_RS04500 (912949) | 912949..914127 | - | 1179 | WP_001065546.1 | GIY-YIG nuclease family protein | - |
| H9199_RS04505 (914120) | 914120..916165 | - | 2046 | WP_001060305.1 | DEAD/DEAH box helicase | - |
| H9199_RS04510 (916162) | 916162..918948 | - | 2787 | WP_001385107.1 | class I SAM-dependent DNA methyltransferase | - |
| H9199_RS04515 (919196) | 919196..919561 | + | 366 | Protein_873 | transposase | - |
| H9199_RS04520 (919701) | 919701..920120 | + | 420 | WP_032313936.1 | IS66 family transposase ISEc43 | Transposase |
| H9199_RS04525 (920117) | 920117..920191 | + | 75 | Protein_875 | IS66 family transposase ISEc47 | Transposase |
| H9199_RS04530 (920420) | 920420..920602 | - | 183 | WP_000282126.1 | hypothetical protein | - |
| H9199_RS04535 (920933) | 920933..921805 | + | 873 | WP_058343187.1 | GTPase family protein | - |
| H9199_RS04540 (922178) | 922178..925024 | + | 2847 | WP_040234914.1 | Ag43/Cah family autotransporter adhesin | - |
| H9199_RS04545 (925351) | 925351..926169 | + | 819 | WP_001234702.1 | DUF932 domain-containing protein | - |
| H9199_RS04550 (926260) | 926260..926745 | + | 486 | WP_000214317.1 | antirestriction protein | - |
| H9199_RS04555 (926760) | 926760..927236 | + | 477 | WP_001186747.1 | RadC family protein | - |
| H9199_RS04560 (927305) | 927305..927526 | + | 222 | WP_000692312.1 | DUF987 domain-containing protein | - |
| H9199_RS04565 (927606) | 927606..927974 | + | 369 | WP_053271974.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| H9199_RS04570 (928064) | 928064..928447 | + | 384 | WP_000854822.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin Detail |
| H9199_RS04575 (928438) | 928438..928926 | + | 489 | WP_001177592.1 | DUF5983 family protein | - |
| H9199_RS04580 (928938) | 928938..929135 | + | 198 | WP_000839263.1 | DUF957 domain-containing protein | - |
| H9199_RS04585 (929232) | 929232..930077 | + | 846 | WP_040234917.1 | DUF4942 domain-containing protein | - |
| H9199_RS04595 (930376) | 930376..930882 | + | 507 | WP_000228937.1 | G/U mismatch-specific DNA glycosylase | - |
| H9199_RS04600 (930960) | 930960..932801 | - | 1842 | WP_000437371.1 | RNA polymerase sigma factor RpoD | - |
| H9199_RS04605 (932996) | 932996..934741 | - | 1746 | WP_000918827.1 | DNA primase | - |
| H9199_RS04610 (934852) | 934852..935067 | - | 216 | WP_001144069.1 | 30S ribosomal protein S21 | - |
| H9199_RS04615 (935304) | 935304..936317 | + | 1014 | WP_001264365.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| H9199_RS04620 (936360) | 936360..937823 | - | 1464 | WP_000804911.1 | L-tartrate/succinate antiporter | - |
| H9199_RS04625 (937872) | 937872..938477 | - | 606 | WP_000722962.1 | L(+)-tartrate dehydratase subunit beta | - |
| H9199_RS04630 (938474) | 938474..939385 | - | 912 | WP_000986797.1 | L(+)-tartrate dehydratase subunit alpha | - |
| H9199_RS04635 (939592) | 939592..940524 | + | 933 | WP_000935209.1 | DNA-binding transcriptional activator TtdR | - |
| H9199_RS04640 (940537) | 940537..941154 | - | 618 | WP_001272796.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| H9199_RS04645 (941259) | 941259..941627 | + | 369 | WP_001295541.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| H9199_RS04650 (941718) | 941718..942539 | + | 822 | WP_001305111.1 | undecaprenyl-diphosphate phosphatase | - |
| H9199_RS04655 (942702) | 942702..943940 | - | 1239 | WP_000708501.1 | fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca | - |
| H9199_RS04660 (944004) | 944004..944624 | - | 621 | WP_001125332.1 | TIGR04211 family SH3 domain-containing protein | - |
| H9199_RS04665 (944866) | 944866..946167 | + | 1302 | WP_000046272.1 | inorganic triphosphatase | - |
| H9199_RS04670 (946190) | 946190..949030 | + | 2841 | WP_001298736.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| H9199_RS04675 (949078) | 949078..950511 | + | 1434 | WP_000869178.1 | Bifunctional protein HldE | VF |
| H9199_RS04680 (950631) | 950631..950690 | - | 60 | WP_001387082.1 | type I toxin-antitoxin system Ibs family toxin | - |
| - (950591) | 950591..950732 | + | 142 | NuclAT_3 | - | - |
| - (950591) | 950591..950732 | + | 142 | NuclAT_3 | - | - |
| - (950591) | 950591..950732 | + | 142 | NuclAT_3 | - | - |
| - (950591) | 950591..950732 | + | 142 | NuclAT_3 | - | - |
| H9199_RS04685 (951007) | 951007..951066 | - | 60 | WP_100249846.1 | type I toxin-antitoxin system Ibs family toxin | - |
| - (950967) | 950967..951108 | + | 142 | NuclAT_2 | - | - |
| - (950967) | 950967..951108 | + | 142 | NuclAT_2 | - | - |
| - (950967) | 950967..951108 | + | 142 | NuclAT_2 | - | - |
| - (950967) | 950967..951108 | + | 142 | NuclAT_2 | - | - |
| - (950967) | 950967..951108 | + | 142 | NuclAT_4 | - | - |
| - (950967) | 950967..951108 | + | 142 | NuclAT_4 | - | - |
| - (950967) | 950967..951108 | + | 142 | NuclAT_4 | - | - |
| - (950967) | 950967..951108 | + | 142 | NuclAT_4 | - | - |
| H9199_RS04690 (951305) | 951305..952966 | - | 1662 | WP_000341046.1 | flotillin family protein | - |
| H9199_RS04695 (952993) | 952993..953622 | - | 630 | WP_000599947.1 | DUF1449 family protein | - |
| H9199_RS04700 (953891) | 953891..954091 | + | 201 | WP_100729273.1 | cell surface composition regulator GlgS | - |
| H9199_RS04705 (954134) | 954134..955198 | - | 1065 | WP_001269793.1 | fimbrial protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|