MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 40198 bp
Accession: NZ_CP059962 Location: 1354539..1394736 Organism: Pectobacterium brasiliense strain IPO:3710 NAK:380 Replicon: chromosome
Accession: NZ_CP059962 Location: 1354539..1394736 Organism: Pectobacterium brasiliense strain IPO:3710 NAK:380 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5A25_RS05830 () | 1349625..1353659 | - | 4035 | WP_119870900.1 | hypothetical protein | - |
| H5A25_RS05835 () | 1354204..1354368 | - | 165 | Protein_1143 | DUF4102 domain-containing protein | - |
| H5A25_RS05840 () | 1355433..1356431 | + | 999 | WP_127110943.1 | hypothetical protein | - |
| H5A25_RS05845 () | 1356654..1357922 | + | 1269 | WP_119870902.1 | hypothetical protein | - |
| H5A25_RS05850 () | 1358670..1360268 | + | 1599 | WP_119870903.1 | TIGR04141 family sporadically distributed protein | - |
| H5A25_RS05855 () | 1360438..1360611 | - | 174 | WP_119870910.1 | DNA cytosine methyltransferase | - |
| H5A25_RS05860 () | 1361276..1363474 | - | 2199 | WP_119870904.1 | DEAD/DEAH box helicase | - |
| H5A25_RS05865 () | 1363471..1364784 | - | 1314 | WP_119870905.1 | ATP-binding protein | - |
| H5A25_RS05870 () | 1364788..1367097 | - | 2310 | WP_119870906.1 | TerB N-terminal domain-containing protein | - |
| H5A25_RS05875 () | 1367862..1368806 | + | 945 | WP_119870391.1 | DUF1738 domain-containing protein | - |
| H5A25_RS05880 () | 1369126..1369362 | + | 237 | WP_029729596.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| H5A25_RS05885 () | 1369365..1369679 | + | 315 | WP_119870392.1 | CcdB family protein | Toxin Detail |
| H5A25_RS05890 () | 1370103..1371101 | + | 999 | WP_119870393.1 | hypothetical protein | - |
| H5A25_RS05895 () | 1371264..1371806 | - | 543 | WP_119870394.1 | DUF3916 domain-containing protein | - |
| H5A25_RS05900 () | 1372003..1372749 | - | 747 | WP_119870395.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| H5A25_RS05905 () | 1372758..1374620 | - | 1863 | WP_119870396.1 | type IV secretory system conjugative DNA transfer family protein | - |
| H5A25_RS05910 () | 1375345..1375647 | - | 303 | WP_119870397.1 | conjugal transfer protein | - |
| H5A25_RS05915 () | 1375691..1376707 | - | 1017 | WP_119870398.1 | Type IV secretion system protein VirB11 | VF |
| H5A25_RS05920 () | 1376697..1377920 | - | 1224 | WP_119870399.1 | Type IV secretion system protein virB10 | VF |
| H5A25_RS05925 () | 1377917..1378807 | - | 891 | WP_119870400.1 | P-type conjugative transfer protein VirB9 | - |
| H5A25_RS05930 () | 1378807..1379490 | - | 684 | WP_119870401.1 | type IV secretion system protein | - |
| H5A25_RS05935 () | 1379483..1379623 | - | 141 | WP_025918851.1 | hypothetical protein | - |
| H5A25_RS05940 () | 1379711..1380751 | - | 1041 | WP_119870402.1 | type IV secretion system protein | - |
| H5A25_RS05945 () | 1380763..1380987 | - | 225 | WP_039551199.1 | EexN family lipoprotein | - |
| H5A25_RS05950 () | 1380998..1381714 | - | 717 | WP_119870403.1 | type IV secretion system protein | - |
| H5A25_RS05955 () | 1381738..1384485 | - | 2748 | WP_119870404.1 | Type IV secretion system protein virB4 | VF |
| H5A25_RS05960 () | 1384495..1384776 | - | 282 | WP_086002448.1 | TrbC/VirB2 family protein | - |
| H5A25_RS05965 () | 1384773..1385438 | - | 666 | WP_119870405.1 | Type IV secretion system protein virB1 | VF |
| H5A25_RS05970 () | 1385517..1385738 | - | 222 | WP_039285692.1 | hypothetical protein | - |
| H5A25_RS05975 () | 1386386..1387597 | + | 1212 | WP_119870406.1 | hypothetical protein | - |
| H5A25_RS05980 () | 1387614..1389296 | + | 1683 | WP_199679133.1 | ATP-binding protein | - |
| H5A25_RS05985 () | 1389441..1389650 | - | 210 | WP_119870408.1 | TraR/DksA family transcriptional regulator | - |
| H5A25_RS05990 () | 1389640..1390224 | - | 585 | WP_119870409.1 | DUF2857 domain-containing protein | - |
| H5A25_RS05995 () | 1390241..1390435 | - | 195 | WP_025918863.1 | AlpA family transcriptional regulator | - |
| H5A25_RS06000 () | 1390589..1391506 | - | 918 | WP_119870410.1 | hypothetical protein | - |
| H5A25_RS06005 () | 1391921..1392193 | - | 273 | WP_014699383.1 | helix-turn-helix domain-containing protein | - |
| H5A25_RS06010 () | 1392340..1392654 | + | 315 | WP_025918866.1 | helix-turn-helix domain-containing protein | - |
| H5A25_RS06015 () | 1392840..1393154 | + | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| H5A25_RS06020 () | 1393288..1394559 | - | 1272 | WP_119870412.1 | Prophage integrase IntA ; Integrase | Integrase |
| H5A25_RS06030 () | 1394907..1395704 | - | 798 | WP_119870413.1 | DgsA anti-repressor MtfA | - |
| H5A25_RS06040 () | 1395945..1396331 | - | 387 | WP_014914890.1 | lysozyme inhibitor LprI family protein | - |
| H5A25_RS06045 () | 1396486..1396653 | + | 168 | WP_010280855.1 | YqaE/Pmp3 family membrane protein | - |
| H5A25_RS06050 () | 1396736..1398211 | - | 1476 | WP_119870550.1 | sensor domain-containing diguanylate cyclase | - |
| H5A25_RS06055 () | 1398495..1399403 | + | 909 | WP_039516916.1 | lipid kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|