MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 40198 bp
Accession: NZ_CP059961 Location: 3057564..3097761 Organism: Pectobacterium brasiliense strain IPO:4057 NAK:249 Replicon: chromosome
Accession: NZ_CP059961 Location: 3057564..3097761 Organism: Pectobacterium brasiliense strain IPO:4057 NAK:249 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5A39_RS13585 () | 3052650..3056684 | - | 4035 | WP_119870900.1 | hypothetical protein | - |
| H5A39_RS13590 () | 3057229..3057393 | - | 165 | Protein_2654 | DUF4102 domain-containing protein | - |
| H5A39_RS13595 () | 3058458..3059456 | + | 999 | WP_127110943.1 | hypothetical protein | - |
| H5A39_RS13600 () | 3059679..3060947 | + | 1269 | WP_119870902.1 | hypothetical protein | - |
| H5A39_RS13605 () | 3061695..3063293 | + | 1599 | WP_119870903.1 | TIGR04141 family sporadically distributed protein | - |
| H5A39_RS13610 () | 3063463..3063636 | - | 174 | WP_119870910.1 | DNA cytosine methyltransferase | - |
| H5A39_RS13615 () | 3064301..3066499 | - | 2199 | WP_119870904.1 | DEAD/DEAH box helicase | - |
| H5A39_RS13620 () | 3066496..3067809 | - | 1314 | WP_119870905.1 | ATP-binding protein | - |
| H5A39_RS13625 () | 3067813..3070122 | - | 2310 | WP_119870906.1 | TerB N-terminal domain-containing protein | - |
| H5A39_RS13630 () | 3070887..3071831 | + | 945 | WP_119870391.1 | DUF1738 domain-containing protein | - |
| H5A39_RS13635 () | 3072151..3072387 | + | 237 | WP_029729596.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| H5A39_RS13640 () | 3072390..3072704 | + | 315 | WP_119870392.1 | CcdB family protein | Toxin Detail |
| H5A39_RS13645 () | 3073128..3074126 | + | 999 | WP_119870393.1 | hypothetical protein | - |
| H5A39_RS13650 () | 3074289..3074831 | - | 543 | WP_119870394.1 | DUF3916 domain-containing protein | - |
| H5A39_RS13655 () | 3075028..3075774 | - | 747 | WP_119870395.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| H5A39_RS13660 () | 3075783..3077645 | - | 1863 | WP_119870396.1 | type IV secretory system conjugative DNA transfer family protein | - |
| H5A39_RS13665 () | 3078370..3078672 | - | 303 | WP_119870397.1 | conjugal transfer protein | - |
| H5A39_RS13670 () | 3078716..3079732 | - | 1017 | WP_119870398.1 | hypothetical protein | VF |
| H5A39_RS13675 () | 3079722..3080945 | - | 1224 | WP_119870399.1 | hypothetical protein | VF |
| H5A39_RS13680 () | 3080942..3081832 | - | 891 | WP_119870400.1 | P-type conjugative transfer protein VirB9 | - |
| H5A39_RS13685 () | 3081832..3082515 | - | 684 | WP_119870401.1 | type IV secretion system protein | - |
| H5A39_RS13690 () | 3082508..3082648 | - | 141 | WP_025918851.1 | hypothetical protein | - |
| H5A39_RS13695 () | 3082736..3083776 | - | 1041 | WP_119870402.1 | type IV secretion system protein | - |
| H5A39_RS13700 () | 3083788..3084012 | - | 225 | WP_039551199.1 | EexN family lipoprotein | - |
| H5A39_RS13705 () | 3084023..3084739 | - | 717 | WP_119870403.1 | type IV secretion system protein | - |
| H5A39_RS13710 () | 3084763..3087510 | - | 2748 | WP_119870404.1 | hypothetical protein | VF |
| H5A39_RS13715 () | 3087520..3087801 | - | 282 | WP_086002448.1 | TrbC/VirB2 family protein | - |
| H5A39_RS13720 () | 3087798..3088463 | - | 666 | WP_119870405.1 | hypothetical protein | VF |
| H5A39_RS13725 () | 3088542..3088763 | - | 222 | WP_039285692.1 | hypothetical protein | - |
| H5A39_RS13730 () | 3089411..3090622 | + | 1212 | WP_119870406.1 | hypothetical protein | - |
| H5A39_RS13735 () | 3090639..3092321 | + | 1683 | WP_199679133.1 | ATP-binding protein | - |
| H5A39_RS13740 () | 3092466..3092675 | - | 210 | WP_119870408.1 | TraR/DksA family transcriptional regulator | - |
| H5A39_RS13745 () | 3092665..3093249 | - | 585 | WP_119870409.1 | DUF2857 domain-containing protein | - |
| H5A39_RS13750 () | 3093266..3093460 | - | 195 | WP_025918863.1 | AlpA family transcriptional regulator | - |
| H5A39_RS13755 () | 3093614..3094531 | - | 918 | WP_119870410.1 | hypothetical protein | - |
| H5A39_RS13760 () | 3094946..3095218 | - | 273 | WP_014699383.1 | helix-turn-helix domain-containing protein | - |
| H5A39_RS13765 () | 3095365..3095679 | + | 315 | WP_025918866.1 | helix-turn-helix domain-containing protein | - |
| H5A39_RS13770 () | 3095865..3096179 | + | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| H5A39_RS13775 () | 3096313..3097584 | - | 1272 | WP_119870412.1 | hypothetical protein ; Integrase | Integrase |
| H5A39_RS13785 () | 3097932..3098729 | - | 798 | WP_119870413.1 | DgsA anti-repressor MtfA | - |
| H5A39_RS13795 () | 3098970..3099356 | - | 387 | WP_014914890.1 | lysozyme inhibitor LprI family protein | - |
| H5A39_RS13800 () | 3099511..3099678 | + | 168 | WP_010280855.1 | YqaE/Pmp3 family membrane protein | - |
| H5A39_RS13805 () | 3099761..3101236 | - | 1476 | WP_119870550.1 | sensor domain-containing diguanylate cyclase | - |
| H5A39_RS13810 () | 3101520..3102428 | + | 909 | WP_039516916.1 | lipid kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|