MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 40198 bp
Accession: NZ_CP059960 Location: 3294754..3334951 Organism: Pectobacterium brasiliense strain IPO:4060 NAK:251 Replicon: chromosome
Accession: NZ_CP059960 Location: 3294754..3334951 Organism: Pectobacterium brasiliense strain IPO:4060 NAK:251 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5A37_RS14520 () | 3289840..3293874 | - | 4035 | WP_119870900.1 | hypothetical protein | - |
| H5A37_RS14525 () | 3294419..3294583 | - | 165 | Protein_2817 | DUF4102 domain-containing protein | - |
| H5A37_RS14530 () | 3295648..3296646 | + | 999 | WP_127110943.1 | hypothetical protein | - |
| H5A37_RS14535 () | 3296869..3298137 | + | 1269 | WP_119870902.1 | hypothetical protein | - |
| H5A37_RS14540 () | 3298885..3300483 | + | 1599 | WP_119870903.1 | TIGR04141 family sporadically distributed protein | - |
| H5A37_RS14545 () | 3300653..3300826 | - | 174 | WP_119870910.1 | DNA cytosine methyltransferase | - |
| H5A37_RS14550 () | 3301491..3303689 | - | 2199 | WP_119870904.1 | DEAD/DEAH box helicase | - |
| H5A37_RS14555 () | 3303686..3304999 | - | 1314 | WP_119870905.1 | ATP-binding protein | - |
| H5A37_RS14560 () | 3305003..3307312 | - | 2310 | WP_119870906.1 | TerB N-terminal domain-containing protein | - |
| H5A37_RS14565 () | 3308077..3309021 | + | 945 | WP_119870391.1 | DUF1738 domain-containing protein | - |
| H5A37_RS14570 () | 3309341..3309577 | + | 237 | WP_029729596.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| H5A37_RS14575 () | 3309580..3309894 | + | 315 | WP_119870392.1 | CcdB family protein | Toxin Detail |
| H5A37_RS14580 () | 3310318..3311316 | + | 999 | WP_119870393.1 | hypothetical protein | - |
| H5A37_RS14585 () | 3311479..3312021 | - | 543 | WP_119870394.1 | DUF3916 domain-containing protein | - |
| H5A37_RS14590 () | 3312218..3312964 | - | 747 | WP_119870395.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| H5A37_RS14595 () | 3312973..3314835 | - | 1863 | WP_119870396.1 | type IV secretory system conjugative DNA transfer family protein | - |
| H5A37_RS14600 () | 3315560..3315862 | - | 303 | WP_119870397.1 | conjugal transfer protein | - |
| H5A37_RS14605 () | 3315906..3316922 | - | 1017 | WP_119870398.1 | hypothetical protein | VF |
| H5A37_RS14610 () | 3316912..3318135 | - | 1224 | WP_119870399.1 | hypothetical protein | VF |
| H5A37_RS14615 () | 3318132..3319022 | - | 891 | WP_119870400.1 | P-type conjugative transfer protein VirB9 | - |
| H5A37_RS14620 () | 3319022..3319705 | - | 684 | WP_119870401.1 | type IV secretion system protein | - |
| H5A37_RS14625 () | 3319698..3319838 | - | 141 | WP_025918851.1 | hypothetical protein | - |
| H5A37_RS14630 () | 3319926..3320966 | - | 1041 | WP_119870402.1 | type IV secretion system protein | - |
| H5A37_RS14635 () | 3320978..3321202 | - | 225 | WP_039551199.1 | EexN family lipoprotein | - |
| H5A37_RS14640 () | 3321213..3321929 | - | 717 | WP_119870403.1 | type IV secretion system protein | - |
| H5A37_RS14645 () | 3321953..3324700 | - | 2748 | WP_119870404.1 | hypothetical protein | VF |
| H5A37_RS14650 () | 3324710..3324991 | - | 282 | WP_086002448.1 | TrbC/VirB2 family protein | - |
| H5A37_RS14655 () | 3324988..3325653 | - | 666 | WP_119870405.1 | hypothetical protein | VF |
| H5A37_RS14660 () | 3325732..3325953 | - | 222 | WP_039285692.1 | hypothetical protein | - |
| H5A37_RS14665 () | 3326601..3327812 | + | 1212 | WP_119870406.1 | hypothetical protein | - |
| H5A37_RS14670 () | 3327829..3329511 | + | 1683 | WP_199679133.1 | ATP-binding protein | - |
| H5A37_RS14675 () | 3329656..3329865 | - | 210 | WP_119870408.1 | TraR/DksA family transcriptional regulator | - |
| H5A37_RS14680 () | 3329855..3330439 | - | 585 | WP_119870409.1 | DUF2857 domain-containing protein | - |
| H5A37_RS14685 () | 3330456..3330650 | - | 195 | WP_025918863.1 | AlpA family transcriptional regulator | - |
| H5A37_RS14690 () | 3330804..3331721 | - | 918 | WP_119870410.1 | hypothetical protein | - |
| H5A37_RS14695 () | 3332136..3332408 | - | 273 | WP_014699383.1 | helix-turn-helix domain-containing protein | - |
| H5A37_RS14700 () | 3332555..3332869 | + | 315 | WP_025918866.1 | helix-turn-helix domain-containing protein | - |
| H5A37_RS14705 () | 3333055..3333369 | + | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| H5A37_RS14710 () | 3333503..3334774 | - | 1272 | WP_119870412.1 | hypothetical protein ; Integrase | Integrase |
| H5A37_RS14720 () | 3335122..3335919 | - | 798 | WP_119870413.1 | DgsA anti-repressor MtfA | - |
| H5A37_RS14730 () | 3336160..3336546 | - | 387 | WP_014914890.1 | lysozyme inhibitor LprI family protein | - |
| H5A37_RS14735 () | 3336701..3336868 | + | 168 | WP_010280855.1 | YqaE/Pmp3 family membrane protein | - |
| H5A37_RS14740 () | 3336951..3338426 | - | 1476 | WP_119870550.1 | sensor domain-containing diguanylate cyclase | - |
| H5A37_RS14745 () | 3338710..3339618 | + | 909 | WP_039516916.1 | lipid kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|