MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 40198 bp
Accession: NZ_CP059955 Location: 3314007..3354204 Organism: Pectobacterium brasiliense strain IPO:4134 NAK:395 Replicon: chromosome
Accession: NZ_CP059955 Location: 3314007..3354204 Organism: Pectobacterium brasiliense strain IPO:4134 NAK:395 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5A16_RS14675 () | 3309093..3313127 | - | 4035 | WP_119870900.1 | hypothetical protein | - |
| H5A16_RS14680 () | 3313672..3313836 | - | 165 | Protein_2848 | DUF4102 domain-containing protein | - |
| H5A16_RS14685 () | 3314901..3315899 | + | 999 | WP_127110943.1 | hypothetical protein | - |
| H5A16_RS14690 () | 3316122..3317390 | + | 1269 | WP_119870902.1 | hypothetical protein | - |
| H5A16_RS14695 () | 3318138..3319736 | + | 1599 | WP_119870903.1 | TIGR04141 family sporadically distributed protein | - |
| H5A16_RS14700 () | 3319906..3320079 | - | 174 | WP_119870910.1 | DNA cytosine methyltransferase | - |
| H5A16_RS14705 () | 3320744..3322942 | - | 2199 | WP_119870904.1 | DEAD/DEAH box helicase | - |
| H5A16_RS14710 () | 3322939..3324252 | - | 1314 | WP_119870905.1 | ATP-binding protein | - |
| H5A16_RS14715 () | 3324256..3326565 | - | 2310 | WP_119870906.1 | TerB N-terminal domain-containing protein | - |
| H5A16_RS14720 () | 3327330..3328274 | + | 945 | WP_119870391.1 | DUF1738 domain-containing protein | - |
| H5A16_RS14725 () | 3328594..3328830 | + | 237 | WP_029729596.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| H5A16_RS14730 () | 3328833..3329147 | + | 315 | WP_119870392.1 | CcdB family protein | Toxin Detail |
| H5A16_RS14735 () | 3329571..3330569 | + | 999 | WP_119870393.1 | hypothetical protein | - |
| H5A16_RS14740 () | 3330732..3331274 | - | 543 | WP_119870394.1 | DUF3916 domain-containing protein | - |
| H5A16_RS14745 () | 3331471..3332217 | - | 747 | WP_119870395.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| H5A16_RS14750 () | 3332226..3334088 | - | 1863 | WP_119870396.1 | type IV secretory system conjugative DNA transfer family protein | - |
| H5A16_RS14755 () | 3334813..3335115 | - | 303 | WP_119870397.1 | conjugal transfer protein | - |
| H5A16_RS14760 () | 3335159..3336175 | - | 1017 | WP_119870398.1 | Type IV secretion system protein VirB11 | VF |
| H5A16_RS14765 () | 3336165..3337388 | - | 1224 | WP_119870399.1 | Type IV secretion system protein virB10 | VF |
| H5A16_RS14770 () | 3337385..3338275 | - | 891 | WP_119870400.1 | P-type conjugative transfer protein VirB9 | - |
| H5A16_RS14775 () | 3338275..3338958 | - | 684 | WP_119870401.1 | type IV secretion system protein | - |
| H5A16_RS14780 () | 3338951..3339091 | - | 141 | WP_025918851.1 | hypothetical protein | - |
| H5A16_RS14785 () | 3339179..3340219 | - | 1041 | WP_119870402.1 | type IV secretion system protein | - |
| H5A16_RS14790 () | 3340231..3340455 | - | 225 | WP_039551199.1 | EexN family lipoprotein | - |
| H5A16_RS14795 () | 3340466..3341182 | - | 717 | WP_119870403.1 | type IV secretion system protein | - |
| H5A16_RS14800 () | 3341206..3343953 | - | 2748 | WP_119870404.1 | Type IV secretion system protein virB4 | VF |
| H5A16_RS14805 () | 3343963..3344244 | - | 282 | WP_086002448.1 | TrbC/VirB2 family protein | - |
| H5A16_RS14810 () | 3344241..3344906 | - | 666 | WP_119870405.1 | Type IV secretion system protein virB1 | VF |
| H5A16_RS14815 () | 3344985..3345206 | - | 222 | WP_039285692.1 | hypothetical protein | - |
| H5A16_RS14820 () | 3345854..3347065 | + | 1212 | WP_119870406.1 | hypothetical protein | - |
| H5A16_RS14825 () | 3347082..3348764 | + | 1683 | WP_199679133.1 | ATP-binding protein | - |
| H5A16_RS14830 () | 3348909..3349118 | - | 210 | WP_119870408.1 | TraR/DksA family transcriptional regulator | - |
| H5A16_RS14835 () | 3349108..3349692 | - | 585 | WP_119870409.1 | DUF2857 domain-containing protein | - |
| H5A16_RS14840 () | 3349709..3349903 | - | 195 | WP_025918863.1 | AlpA family transcriptional regulator | - |
| H5A16_RS14845 () | 3350057..3350974 | - | 918 | WP_119870410.1 | hypothetical protein | - |
| H5A16_RS14850 () | 3351389..3351661 | - | 273 | WP_014699383.1 | helix-turn-helix domain-containing protein | - |
| H5A16_RS14855 () | 3351808..3352122 | + | 315 | WP_025918866.1 | helix-turn-helix domain-containing protein | - |
| H5A16_RS14860 () | 3352308..3352622 | + | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| H5A16_RS14865 () | 3352756..3354027 | - | 1272 | WP_119870412.1 | Prophage integrase IntA ; Integrase | Integrase |
| H5A16_RS14875 () | 3354375..3355172 | - | 798 | WP_119870413.1 | DgsA anti-repressor MtfA | - |
| H5A16_RS14885 () | 3355413..3355799 | - | 387 | WP_014914890.1 | lysozyme inhibitor LprI family protein | - |
| H5A16_RS14890 () | 3355954..3356121 | + | 168 | WP_010280855.1 | YqaE/Pmp3 family membrane protein | - |
| H5A16_RS14895 () | 3356204..3357679 | - | 1476 | WP_119870550.1 | sensor domain-containing diguanylate cyclase | - |
| H5A16_RS14900 () | 3357963..3358871 | + | 909 | WP_039516916.1 | lipid kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|