MGE detailed information
MGE type: Prophage MGE length: 84742 bp
Accession: NZ_CP059849 Location: 1930679..2015420 Organism: Citrobacter freundii strain 3863 Replicon: chromosome
Accession: NZ_CP059849 Location: 1930679..2015420 Organism: Citrobacter freundii strain 3863 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
H4O05_RS09105 () | 1926171..1926737 | + | 567 | WP_003034677.1 | VOC family protein | - |
H4O05_RS09110 () | 1926740..1927486 | + | 747 | WP_016150525.1 | copper homeostasis protein CutC | - |
H4O05_RS09115 () | 1927730..1928698 | - | 969 | WP_185228647.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
H4O05_RS09120 () | 1928695..1929438 | - | 744 | WP_003034686.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
H4O05_RS09125 () | 1929479..1929874 | - | 396 | WP_003034689.1 | MAPEG family protein | - |
H4O05_RS09130 () | 1929927..1930700 | - | 774 | WP_164850799.1 | DUF72 domain-containing protein | - |
H4O05_RS09135 () | 1930679..1931992 | - | 1314 | WP_185228648.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
H4O05_RS09140 () | 1932051..1932287 | - | 237 | WP_003839185.1 | excisionase family protein | - |
H4O05_RS09145 () | 1932328..1932897 | - | 570 | WP_185228649.1 | 3'-5' exonuclease | - |
H4O05_RS09150 () | 1932899..1933567 | - | 669 | WP_221629019.1 | hypothetical protein | - |
H4O05_RS09155 () | 1933843..1934040 | - | 198 | WP_242188188.1 | hypothetical protein | - |
H4O05_RS09160 () | 1934048..1934392 | - | 345 | WP_072667373.1 | hypothetical protein | - |
H4O05_RS09165 () | 1934389..1934643 | - | 255 | WP_049015418.1 | hypothetical protein | - |
H4O05_RS09170 () | 1934640..1934816 | - | 177 | WP_170855027.1 | hypothetical protein | - |
H4O05_RS09175 () | 1934804..1935343 | - | 540 | WP_072667372.1 | hypothetical protein | - |
H4O05_RS09180 () | 1935451..1936368 | - | 918 | WP_185228651.1 | recombination-associated protein RdgC | - |
H4O05_RS09185 () | 1937412..1938104 | - | 693 | WP_110497677.1 | helix-turn-helix transcriptional regulator | - |
H4O05_RS09190 () | 1938202..1938447 | + | 246 | WP_185228652.1 | helix-turn-helix transcriptional regulator | - |
H4O05_RS09195 () | 1938458..1939009 | + | 552 | WP_048216423.1 | YmfL family putative regulatory protein | - |
H4O05_RS09200 () | 1939182..1939361 | + | 180 | WP_003034732.1 | DUF4222 domain-containing protein | - |
H4O05_RS09205 () | 1939351..1940208 | + | 858 | WP_185228653.1 | conserved phage C-terminal domain-containing protein | - |
H4O05_RS09210 () | 1940205..1941527 | + | 1323 | WP_185228654.1 | phage N-6-adenine-methyltransferase | - |
H4O05_RS09215 () | 1941520..1943517 | + | 1998 | WP_185228655.1 | DNA cytosine methyltransferase | - |
H4O05_RS09220 () | 1943514..1943900 | + | 387 | WP_003034741.1 | RusA family crossover junction endodeoxyribonuclease | - |
H4O05_RS09225 () | 1943914..1944597 | + | 684 | WP_185228656.1 | DNA-binding protein | - |
H4O05_RS09230 () | 1944594..1945589 | + | 996 | WP_185228657.1 | DUF968 domain-containing protein | - |
H4O05_RS09235 () | 1945606..1946436 | + | 831 | WP_185228658.1 | antitermination protein | - |
H4O05_RS09240 () | 1946624..1946866 | + | 243 | WP_075551253.1 | hypothetical protein | - |
H4O05_RS09245 () | 1947113..1947445 | + | 333 | WP_127649219.1 | phage holin, lambda family | - |
H4O05_RS09250 () | 1947429..1947917 | + | 489 | WP_048240885.1 | TIGR02594 family protein | - |
H4O05_RS09255 () | 1947914..1948477 | + | 564 | WP_080398151.1 | hypothetical protein | - |
H4O05_RS09260 () | 1948856..1949557 | + | 702 | WP_224774996.1 | Fur-regulated protein | - |
H4O05_RS09265 () | 1949573..1949806 | + | 234 | WP_121581705.1 | hypothetical protein | - |
H4O05_RS09270 () | 1949794..1949889 | + | 96 | Protein_1812 | HNH endonuclease | - |
H4O05_RS09275 () | 1950182..1950523 | + | 342 | WP_104651449.1 | HNH endonuclease signature motif containing protein | - |
H4O05_RS09280 () | 1950643..1951107 | + | 465 | WP_046671192.1 | phage terminase small subunit P27 family | - |
H4O05_RS09285 () | 1951061..1952803 | + | 1743 | WP_185228659.1 | terminase large subunit | - |
H4O05_RS09290 () | 1952803..1954110 | + | 1308 | WP_185228660.1 | phage portal protein | - |
H4O05_RS09295 () | 1954123..1954977 | + | 855 | WP_185228661.1 | Clp protease ClpP | - |
H4O05_RS09300 () | 1954988..1956205 | + | 1218 | WP_046671188.1 | phage major capsid protein | - |
H4O05_RS09305 () | 1956248..1956508 | + | 261 | WP_185228662.1 | hypothetical protein | VF |
H4O05_RS09310 () | 1956508..1956834 | + | 327 | WP_185228663.1 | head-tail connector protein | - |
H4O05_RS09315 () | 1956898..1957110 | + | 213 | WP_087051098.1 | hypothetical protein | - |
H4O05_RS09320 () | 1957112..1957444 | + | 333 | WP_087051099.1 | phage head closure protein | - |
H4O05_RS09325 () | 1957437..1957976 | + | 540 | WP_087051100.1 | HK97 gp10 family phage protein | - |
H4O05_RS09330 () | 1957973..1958338 | + | 366 | WP_003841715.1 | DUF3168 domain-containing protein | - |
H4O05_RS09335 () | 1958398..1958889 | + | 492 | WP_103848985.1 | phage tail tube protein | - |
H4O05_RS09340 () | 1958942..1959322 | + | 381 | WP_003841709.1 | phage tail assembly chaperone family protein, TAC | - |
H4O05_RS09345 () | 1959433..1959609 | + | 177 | WP_221629020.1 | hypothetical protein | - |
H4O05_RS09350 () | 1959672..1960391 | + | 720 | WP_077224034.1 | zinc ribbon domain-containing protein | - |
H4O05_RS09355 () | 1960466..1962940 | + | 2475 | WP_185228664.1 | phage tail tape measure protein | - |
H4O05_RS09360 () | 1963007..1963225 | - | 219 | WP_172693154.1 | hypothetical protein | - |
H4O05_RS09365 () | 1963311..1963904 | + | 594 | WP_185228665.1 | hypothetical protein | - |
H4O05_RS09370 () | 1963904..1964488 | + | 585 | WP_038642083.1 | hypothetical protein | - |
H4O05_RS09375 () | 1964495..1964893 | + | 399 | WP_185228666.1 | hypothetical protein | - |
H4O05_RS09380 () | 1964893..1967607 | + | 2715 | WP_185228667.1 | DUF1983 domain-containing protein | - |
H4O05_RS09385 () | 1967607..1968551 | + | 945 | WP_185228668.1 | DUF6453 family protein | - |
H4O05_RS09390 () | 1968561..1969982 | + | 1422 | WP_185228669.1 | phage tail protein | - |
H4O05_RS09395 () | 1970121..1970363 | - | 243 | WP_000497432.1 | DinI family protein | - |
H4O05_RS09400 () | 1970442..1970774 | + | 333 | WP_003841689.1 | hypothetical protein | - |
H4O05_RS09405 () | 1970966..1971376 | + | 411 | WP_071701222.1 | hemerythrin domain-containing protein | - |
H4O05_RS09410 () | 1971462..1971701 | - | 240 | WP_000497460.1 | DinI family protein | - |
H4O05_RS09415 () | 1971963..1972058 | - | 96 | Protein_1841 | hypothetical protein | - |
H4O05_RS09420 () | 1972055..1972621 | - | 567 | WP_003841685.1 | hydrolase | - |
H4O05_RS09425 () | 1972888..1974660 | + | 1773 | WP_003034862.1 | aspartate--tRNA ligase | - |
H4O05_RS09430 () | 1974662..1975105 | + | 444 | WP_003034863.1 | dihydroneopterin triphosphate diphosphatase | - |
H4O05_RS09435 () | 1975134..1975877 | + | 744 | WP_003034865.1 | transcriptional regulatory protein YebC | VF |
H4O05_RS09440 () | 1975912..1976433 | + | 522 | WP_048232240.1 | crossover junction endodeoxyribonuclease RuvC | - |
H4O05_RS09445 () | 1976434..1977036 | - | 603 | WP_048232238.1 | YebB family permuted papain-like enzyme | - |
H4O05_RS09450 () | 1977301..1978197 | - | 897 | WP_087878987.1 | DUF4034 domain-containing protein | - |
H4O05_RS09455 () | 1978594..1978794 | - | 201 | WP_048232235.1 | hypothetical protein | - |
H4O05_RS09460 () | 1978863..1979474 | + | 612 | WP_003844153.1 | Holliday junction branch migration protein RuvA | - |
H4O05_RS09465 () | 1979483..1980493 | + | 1011 | WP_003034872.1 | Holliday junction branch migration DNA helicase RuvB | - |
H4O05_RS09470 () | 1980572..1981357 | - | 786 | WP_003034874.1 | hypothetical protein | VF |
H4O05_RS09475 () | 1981354..1982109 | - | 756 | WP_003034877.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
H4O05_RS09480 () | 1982188..1983132 | + | 945 | WP_049002353.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
H4O05_RS09485 () | 1983148..1984467 | + | 1320 | WP_003034883.1 | murein DD-endopeptidase MepM | - |
H4O05_RS09490 () | 1984587..1985558 | + | 972 | WP_003841672.1 | Lipid A biosynthesis myristoyltransferase | VF |
H4O05_RS09495 () | 1985602..1987044 | - | 1443 | WP_003034890.1 | pyruvate kinase | - |
H4O05_RS09500 () | 1987163..1988032 | - | 870 | WP_003034893.1 | MurR/RpiR family transcriptional regulator | - |
H4O05_RS09505 () | 1988400..1989875 | + | 1476 | WP_003034896.1 | glucose-6-phosphate dehydrogenase | - |
H4O05_RS09510 () | 1990109..1991920 | + | 1812 | WP_003841668.1 | phosphogluconate dehydratase | - |
H4O05_RS09515 () | 1991955..1992596 | + | 642 | WP_185228670.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
H4O05_RS09520 () | 1992664..1993842 | - | 1179 | WP_048232229.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
H4O05_RS09525 () | 1993974..1994264 | + | 291 | WP_003034906.1 | DNA damage-inducible protein YebG | - |
H4O05_RS09530 () | 1994386..1994739 | + | 354 | WP_003034909.1 | protein YebF | - |
H4O05_RS09535 () | 1994834..1995493 | + | 660 | WP_087878961.1 | tellurite resistance TerB family protein | - |
H4O05_RS09540 () | 1995580..1997634 | + | 2055 | WP_174775182.1 | oligopeptidase B | - |
H4O05_RS09545 () | 1997625..1998287 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
H4O05_RS09550 () | 1998311..1998967 | - | 657 | WP_046671220.1 | carbon-nitrogen hydrolase family protein | - |
H4O05_RS09555 () | 1999074..1999304 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
H4O05_RS09560 () | 1999448..1999822 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
H4O05_RS09565 () | 1999826..2000698 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
H4O05_RS09570 () | 2000719..2001057 | + | 339 | WP_003034934.1 | YebY family protein | - |
- | 2001178..2001321 | - | 144 | - | - | Antitoxin Detail |
- | 2001213..2001316 | + | 104 | - | - | Toxin Detail |
H4O05_RS09575 () | 2001470..2002111 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
H4O05_RS09580 () | 2002112..2002303 | - | 192 | WP_003034941.1 | YebW family protein | - |
H4O05_RS09585 () | 2002406..2002642 | - | 237 | WP_029139506.1 | YebV family protein | - |
H4O05_RS09590 () | 2002743..2004131 | - | 1389 | WP_061548593.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
H4O05_RS09595 () | 2004244..2006877 | - | 2634 | WP_003034947.1 | hypothetical protein | VF |
H4O05_RS09600 () | 2006846..2008129 | - | 1284 | WP_003841983.1 | membrane integrity lipid transport subunit YebS | - |
H4O05_RS09605 () | 2008258..2008755 | + | 498 | WP_003034953.1 | GAF domain-containing protein | - |
H4O05_RS09610 () | 2008852..2009538 | + | 687 | WP_003034957.1 | RNA chaperone ProQ | - |
H4O05_RS09615 () | 2009558..2011606 | + | 2049 | WP_003034960.1 | carboxy terminal-processing peptidase | - |
H4O05_RS09620 () | 2011799..2012680 | + | 882 | WP_003034964.1 | protease HtpX | - |
H4O05_RS09625 () | 2012727..2014100 | - | 1374 | WP_185228671.1 | MFS transporter | - |
H4O05_RS09630 () | 2014275..2015066 | + | 792 | WP_003833778.1 | DNA-binding transcriptional regulator KdgR | - |
H4O05_RS09635 () | 2015181..2015420 | - | 240 | WP_003841988.1 | YobH family protein | - |
H4O05_RS09640 () | 2015585..2015728 | + | 144 | WP_003034977.1 | PhoP/PhoQ regulator MgrB | - |
H4O05_RS09645 () | 2015803..2016087 | + | 285 | WP_003841991.1 | YebO family protein | - |
H4O05_RS09650 () | 2016724..2016867 | + | 144 | WP_003034983.1 | DUF2627 domain-containing protein | - |
H4O05_RS09655 () | 2016880..2017089 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
H4O05_RS09660 () | 2017309..2019054 | + | 1746 | WP_103798130.1 | peptidoglycan glycosyltransferase FtsI | - |
H4O05_RS09665 () | 2019118..2019927 | + | 810 | WP_003841628.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
---|