MGE detailed information
MGE type: Prophage MGE length: 38255 bp
Accession: NZ_CP058849 Location: 2220400..2258654 Organism: Shigella flexneri strain STLEFF_36 Replicon: chromosome
Accession: NZ_CP058849 Location: 2220400..2258654 Organism: Shigella flexneri strain STLEFF_36 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT28_RS10810 (2216299) | 2216299..2217519 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| HZT28_RS10815 (2217644) | 2217644..2218339 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| HZT28_RS10820 (2218292) | 2218292..2219584 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| HZT28_RS10825 (2219743) | 2219743..2220357 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| HZT28_RS10830 (2220400) | 2220400..2221254 | - | 855 | WP_049254808.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| HZT28_RS10835 (2221256) | 2221256..2221873 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| HZT28_RS10840 (2221884) | 2221884..2224307 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| HZT28_RS10845 (2224368) | 2224368..2226794 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| HZT28_RS10850 (2226993) | 2226993..2227298 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| HZT28_RS10855 (2227406) | 2227406..2228116 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| HZT28_RS10860 (2228119) | 2228119..2228679 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| HZT28_RS10865 (2228714) | 2228714..2229055 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| HZT28_RS10870 (2229190) | 2229190..2229516 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| HZT28_RS10875 (2229722) | 2229722..2230936 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| HZT28_RS10880 (2230948) | 2230948..2231967 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| HZT28_RS10885 (2232155) | 2232155..2233435 | - | 1281 | WP_000876958.1 | site-specific integrase | - |
| HZT28_RS10890 (2233470) | 2233470..2233721 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| HZT28_RS10895 (2233794) | 2233794..2235503 | - | 1710 | Protein_2136 | 3'-5' exoribonuclease | - |
| HZT28_RS10900 (2235491) | 2235491..2235748 | + | 258 | Protein_2137 | hypothetical protein | - |
| HZT28_RS10905 (2235789) | 2235789..2236211 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| HZT28_RS10910 (2236208) | 2236208..2236697 | + | 490 | Protein_2139 | class I SAM-dependent methyltransferase | - |
| HZT28_RS10915 (2237080) | 2237080..2238619 | - | 1540 | Protein_2140 | IS66-like element ISEc22 family transposase | - |
| HZT28_RS10920 (2238668) | 2238668..2238898 | - | 231 | Protein_2141 | IS66 family insertion sequence element accessory protein TnpB | - |
| HZT28_RS10925 (2238904) | 2238904..2239026 | - | 123 | Protein_2142 | transposase | - |
| HZT28_RS10930 (2239269) | 2239269..2239690 | + | 422 | Protein_2143 | hypothetical protein | - |
| HZT28_RS10935 (2240325) | 2240325..2241638 | + | 1314 | WP_000589005.1 | ISNCY family transposase | - |
| HZT28_RS10940 (2242075) | 2242075..2242407 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| HZT28_RS10945 (2242610) | 2242610..2242915 | - | 306 | WP_001326990.1 | protein YdfV | - |
| HZT28_RS10950 (2242940) | 2242940..2243179 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HZT28_RS10955 (2243179) | 2243179..2243466 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HZT28_RS10960 (2243538) | 2243538..2243693 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HZT28_RS10965 (2243910) | 2243910..2244161 | + | 252 | WP_000980994.1 | protein Rem | - |
| HZT28_RS10970 (2244228) | 2244228..2244506 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| HZT28_RS10975 (2244508) | 2244508..2245557 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| HZT28_RS10980 (2245571) | 2245571..2246323 | + | 753 | WP_001047135.1 | antitermination protein | - |
| HZT28_RS10985 (2246601) | 2246601..2246690 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| HZT28_RS10990 (2246745) | 2246745..2246957 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HZT28_RS10995 (2247258) | 2247258..2247473 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HZT28_RS11000 (2247837) | 2247837..2248007 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| HZT28_RS11005 (2248227) | 2248227..2248442 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HZT28_RS11010 (2248447) | 2248447..2248758 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| HZT28_RS11015 (2248755) | 2248755..2249288 | + | 534 | WP_001092971.1 | lysozyme | - |
| HZT28_RS11020 (2249285) | 2249285..2249782 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| HZT28_RS11025 (2250145) | 2250145..2250357 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HZT28_RS11030 (2250368) | 2250368..2250556 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| HZT28_RS11035 (2250559) | 2250559..2250624 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| HZT28_RS11040 (2250629) | 2250629..2250859 | + | 231 | WP_000720962.1 | protein YnfN | - |
| HZT28_RS11045 (2251031) | 2251031..2251204 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HZT28_RS11050 (2251356) | 2251356..2251766 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| HZT28_RS11055 (2251824) | 2251824..2252057 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HZT28_RS11060 (2252446) | 2252446..2252991 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| HZT28_RS11065 (2252966) | 2252966..2254771 | + | 1806 | WP_049254577.1 | phage terminase large subunit family protein | - |
| HZT28_RS11070 (2254771) | 2254771..2255346 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| HZT28_RS11075 (2255444) | 2255444..2256034 | - | 591 | WP_000078177.1 | recombinase family protein | - |
| HZT28_RS11080 (2256351) | 2256351..2256584 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HZT28_RS11085 (2256653) | 2256653..2256766 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| HZT28_RS11090 (2257287) | 2257287..2258654 | + | 1368 | Protein_2175 | MHS family MFS transporter | - |
| HZT28_RS11095 (2258743) | 2258743..2260203 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| HZT28_RS11100 (2260238) | 2260238..2260441 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HZT28_RS11105 (2260618) | 2260618..2261304 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| HZT28_RS11110 (2261393) | 2261393..2262139 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|