MGE detailed information
MGE type: Conjugative plasmid MGE length: 145381 bp
Accession: NZ_CP056410 Location: 1..145381 Organism: Citrobacter sp. RHBSTW-00535 Replicon: plasmid pRHBSTW-00535_2
Accession: NZ_CP056410 Location: 1..145381 Organism: Citrobacter sp. RHBSTW-00535 Replicon: plasmid pRHBSTW-00535_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV232_RS24060 () | 1..942 | + | 942 | WP_165690017.1 | replication initiator protein RepA | - |
| HV232_RS24065 () | 2300..2758 | - | 459 | WP_040190671.1 | helix-turn-helix transcriptional regulator | - |
| HV232_RS24070 () | 2820..3056 | + | 237 | WP_181553870.1 | tautomerase family protein | - |
| HV232_RS24075 () | 3292..3435 | + | 144 | Protein_4 | transposase | - |
| HV232_RS24080 () | 4187..6379 | + | 2193 | WP_094169335.1 | 1,4-alpha-glucan branching enzyme | - |
| HV232_RS24085 () | 6509..7792 | + | 1284 | WP_032690514.1 | glucose-1-phosphate adenylyltransferase | - |
| HV232_RS24090 () | 7882..9315 | + | 1434 | WP_181553833.1 | glycogen synthase GlgA | - |
| HV232_RS24095 () | 9334..11781 | + | 2448 | WP_094169334.1 | glycogen phosphorylase | - |
| HV232_RS24100 () | 11886..13529 | + | 1644 | WP_032743938.1 | phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) | - |
| HV232_RS24105 () | 13623..14519 | - | 897 | Protein_10 | IS3 family transposase ISEhe3 | Transposase |
| HV232_RS24110 () | 14529..15680 | - | 1152 | WP_048242354.1 | IS30 family transposase IS30H | Transposase |
| HV232_RS24115 () | 15745..15993 | - | 249 | Protein_12 | IS3 family transposase ISEhe3 | Transposase |
| HV232_RS24120 () | 16131..16700 | + | 570 | WP_040190629.1 | helix-turn-helix transcriptional regulator | - |
| HV232_RS24125 () | 16784..17857 | - | 1074 | WP_075262229.1 | oligosaccharide MFS transporter | - |
| HV232_RS24130 () | 18159..19163 | - | 1005 | WP_117273198.1 | IS110 family transposase IS4321R | Transposase |
| HV232_RS24135 () | 19351..19959 | + | 609 | WP_004393990.1 | TetR/AcrR family transcriptional regulator | - |
| HV232_RS24140 () | 19956..21107 | + | 1152 | WP_022652304.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HV232_RS24145 () | 21104..22309 | + | 1206 | WP_022652303.1 | ABC transporter permease | - |
| HV232_RS24150 () | 22311..23021 | + | 711 | WP_022652302.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| HV232_RS24155 () | 23050..23577 | + | 528 | WP_044258217.1 | hypothetical protein | - |
| HV232_RS24160 () | 23642..24595 | + | 954 | WP_022652300.1 | IS110 family transposase IS4321R | Transposase |
| HV232_RS24165 () | 25014..25343 | + | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HV232_RS24170 () | 25324..25605 | + | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| HV232_RS24175 () | 25883..26359 | + | 477 | Protein_24 | IS5 family transposase ISKpn26 | Transposase |
| HV232_RS24185 () | 27555..28064 | + | 510 | Protein_26 | IS5 family transposase ISKpn26 | Transposase |
| HV232_RS24195 () | 29717..30217 | - | 501 | WP_001752509.1 | non-heme ferritin-like protein | - |
| HV232_RS24200 () | 30544..31248 | - | 705 | WP_047389788.1 | IS6 family transposase IS26 | Transposase |
| HV232_RS24205 () | 31312..31479 | - | 168 | Protein_30 | arsenic metallochaperone ArsD family protein | - |
| HV232_RS24210 () | 31527..31880 | - | 354 | WP_001114073.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| HV232_RS24215 () | 32156..32371 | + | 216 | Protein_32 | HigA family addiction module antidote protein | - |
| HV232_RS24220 () | 32554..33906 | + | 1353 | WP_036983243.1 | hypothetical protein | - |
| HV232_RS24225 () | 34361..34582 | + | 222 | Protein_34 | IS1 family transposase | - |
| HV232_RS24230 () | 34906..36015 | - | 1110 | Protein_35 | alpha/beta fold hydrolase | - |
| HV232_RS24235 () | 36244..37119 | + | 876 | WP_011191349.1 | LysR family transcriptional regulator | - |
| HV232_RS24240 () | 37265..37708 | + | 444 | WP_004099035.1 | Peptide methionine sulfoxide reductase MsrB | VF |
| HV232_RS24245 () | 37710..38249 | + | 540 | WP_004099036.1 | Peptide methionine sulfoxide reductase MsrA 3 | VF |
| HV232_RS24250 () | 38382..39086 | + | 705 | WP_004099038.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| HV232_RS24255 () | 39083..40051 | + | 969 | WP_045269763.1 | magnesium and cobalt transport protein CorA | - |
| HV232_RS24260 () | 40143..40715 | + | 573 | WP_047722653.1 | hypothetical protein | - |
| HV232_RS24265 () | 40803..41252 | + | 450 | WP_004099042.1 | hypothetical protein | - |
| HV232_RS24270 () | 41359..41760 | + | 402 | WP_004099044.1 | hypothetical protein | - |
| HV232_RS24275 () | 41791..42015 | - | 225 | Protein_44 | MFS transporter | - |
| HV232_RS24280 () | 42385..43389 | + | 1005 | WP_117273198.1 | IS110 family transposase IS4321R | Transposase |
| HV232_RS24285 () | 43663..43884 | - | 222 | Protein_46 | IS1 family transposase | - |
| HV232_RS24290 () | 43992..44597 | - | 606 | WP_000509966.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| HV232_RS24295 () | 44692..47589 | + | 2898 | WP_023307208.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| HV232_RS24300 () | 47623..47805 | + | 183 | Protein_49 | MerR family transcriptional regulator | - |
| HV232_RS24305 () | 48666..50141 | + | 1476 | WP_020324153.1 | SEC-C domain-containing protein | - |
| HV232_RS24310 () | 51234..51644 | - | 411 | Protein_51 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| HV232_RS24315 () | 51698..52402 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HV232_RS24320 () | 52461..52712 | + | 252 | WP_001515736.1 | hypothetical protein | - |
| HV232_RS24325 () | 52826..53971 | + | 1146 | WP_181553871.1 | ABC transporter permease | - |
| HV232_RS24330 () | 53977..54768 | + | 792 | WP_001325019.1 | putative ribonucleotide transport ATP-binding protein mkl | VF |
| HV232_RS24335 () | 54770..55708 | + | 939 | WP_000449980.1 | MCE family protein | - |
| HV232_RS24340 () | 55708..56349 | + | 642 | WP_000948259.1 | membrane integrity-associated transporter subunit PqiC | - |
| HV232_RS24345 () | 56697..57974 | + | 1278 | WP_001515737.1 | serine dehydratase subunit alpha family protein | - |
| HV232_RS24350 () | 58056..58574 | + | 519 | Protein_59 | PLP-dependent transferase | - |
| HV232_RS24355 () | 58631..59328 | + | 698 | Protein_60 | IS1 family transposase IS1X2 | Transposase |
| HV232_RS24360 () | 59344..59502 | - | 159 | Protein_61 | hypothetical protein | - |
| HV232_RS24365 () | 59517..59723 | - | 207 | WP_032736819.1 | hypothetical protein | - |
| HV232_RS24370 () | 60380..61384 | - | 1005 | WP_117273198.1 | IS110 family transposase IS4321R | Transposase |
| HV232_RS24375 () | 61558..62157 | - | 600 | WP_032736817.1 | GNAT family N-acetyltransferase | - |
| HV232_RS24380 () | 62423..63376 | + | 954 | WP_022652300.1 | IS110 family transposase IS4321R | Transposase |
| HV232_RS24385 () | 63967..64476 | + | 510 | WP_050483874.1 | sigma-70 family RNA polymerase sigma factor | - |
| HV232_RS24390 () | 64633..65634 | + | 1002 | WP_094169444.1 | permease | - |
| HV232_RS24395 () | 65648..65878 | + | 231 | WP_021314637.1 | thioredoxin family protein | - |
| HV232_RS24400 () | 66156..66359 | - | 204 | WP_021314636.1 | hypothetical protein | - |
| HV232_RS24405 () | 66441..67268 | - | 828 | WP_032430841.1 | universal stress protein | - |
| HV232_RS24410 () | 67286..68764 | - | 1479 | WP_022652309.1 | SulP family inorganic anion transporter | - |
| HV232_RS24415 () | 69271..70293 | + | 1023 | WP_001572362.1 | IS110 family transposase IS1618 | Transposase |
| HV232_RS24420 () | 70585..70892 | - | 308 | Protein_73 | IS1 family transposase | - |
| HV232_RS24425 () | 71369..72109 | + | 741 | WP_022652310.1 | site-specific integrase | - |
| HV232_RS24430 () | 72435..73424 | - | 990 | WP_022652311.1 | RepB family plasmid replication initiator protein | - |
| HV232_RS24435 () | 74280..74549 | + | 270 | WP_022652312.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| HV232_RS24440 () | 74553..75083 | + | 531 | WP_022652313.1 | GNAT family N-acetyltransferase | Toxin Detail |
| HV232_RS24445 () | 75215..76108 | + | 894 | WP_161348953.1 | IS5 family transposase IS5D | Transposase |
| HV232_RS24450 () | 76249..76545 | - | 297 | Protein_79 | IS3 family transposase ISEhe3 | Transposase |
| HV232_RS24455 () | 76562..77644 | - | 1083 | WP_069219573.1 | IS110 family transposase ISEc21 | Transposase |
| HV232_RS24460 () | 77925..78104 | - | 180 | Protein_81 | DDE-type integrase/transposase/recombinase | - |
| HV232_RS24465 () | 78185..79693 | - | 1509 | WP_141201955.1 | group II intron reverse transcriptase/maturase | - |
| HV232_RS24470 () | 80366..80795 | - | 430 | Protein_83 | IS3 family transposase | - |
| HV232_RS24475 () | 80859..82010 | + | 1152 | WP_022652315.1 | IS30 family transposase IS30D | Transposase |
| HV232_RS24480 () | 82043..83383 | - | 1341 | WP_008786676.1 | IS110 family transposase ISWpi13 | Transposase |
| HV232_RS24485 () | 83614..83856 | - | 243 | Protein_86 | IS3 family transposase ISEhe3 | Transposase |
| HV232_RS24490 () | 84227..85393 | + | 1167 | WP_022652317.1 | plasmid-partitioning protein SopA | - |
| HV232_RS24495 () | 85393..86358 | + | 966 | WP_094169339.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HV232_RS24500 () | 87091..88133 | - | 1043 | Protein_89 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HV232_RS24505 () | 88387..90525 | + | 2139 | WP_022652236.1 | hypothetical protein | - |
| HV232_RS24510 () | 90859..92262 | + | 1404 | WP_072200700.1 | DNA cytosine methyltransferase | - |
| HV232_RS24515 () | 92296..93510 | - | 1215 | WP_176443283.1 | type II site-specific deoxyribonuclease | - |
| HV232_RS24520 () | 93659..95784 | - | 2126 | Protein_93 | tyrosine-type recombinase/integrase | - |
| HV232_RS24525 () | 95768..96772 | - | 1005 | Protein_94 | tyrosine-type recombinase/integrase | - |
| HV232_RS24530 () | 96846..97073 | - | 228 | Protein_95 | DNA polymerase V subunit UmuC | - |
| HV232_RS24535 () | 97073..97495 | - | 423 | WP_022652242.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HV232_RS24540 () | 97675..98346 | - | 672 | WP_022652243.1 | SOS response-associated peptidase family protein | - |
| HV232_RS24545 () | 98706..99383 | + | 678 | WP_022652244.1 | DNA methylase | - |
| HV232_RS24550 () | 99383..99604 | + | 222 | WP_022652245.1 | hypothetical protein | - |
| HV232_RS24555 () | 99615..100034 | + | 420 | WP_094169336.1 | DUF1380 domain-containing protein | - |
| HV232_RS24560 () | 100088..100867 | + | 780 | WP_032430832.1 | hypothetical protein | - |
| HV232_RS24565 () | 101274..101780 | + | 507 | WP_015062672.1 | antirestriction protein ArdA | - |
| HV232_RS24570 () | 101823..102014 | + | 192 | WP_022652248.1 | hypothetical protein | - |
| HV232_RS24575 () | 102206..102460 | + | 255 | WP_072200699.1 | DNA polymerase III subunit theta | - |
| HV232_RS24580 () | 102495..102812 | + | 318 | WP_032430831.1 | hypothetical protein | - |
| HV232_RS24585 () | 102935..103156 | - | 222 | WP_015062665.1 | hypothetical protein | - |
| HV232_RS24590 () | 103487..104041 | + | 555 | WP_020842505.1 | single-stranded DNA-binding protein | - |
| HV232_RS24595 () | 104094..104336 | + | 243 | WP_032430848.1 | DUF905 domain-containing protein | - |
| HV232_RS24600 () | 104407..106440 | + | 2034 | Protein_109 | ParB/RepB/Spo0J family partition protein | - |
| HV232_RS24605 () | 106481..106915 | + | 435 | WP_086538015.1 | conjugation system SOS inhibitor PsiB | - |
| HV232_RS24610 () | 106912..107640 | + | 729 | WP_032430829.1 | plasmid SOS inhibition protein A | - |
| HV232_RS24615 () | 107637..107990 | + | 354 | WP_020833567.1 | hypothetical protein | - |
| HV232_RS24620 () | 108344..108718 | + | 375 | WP_020833566.1 | hypothetical protein | - |
| HV232_RS24625 () | 109444..109848 | + | 405 | WP_032430828.1 | hypothetical protein | - |
| HV232_RS24630 () | 109905..110252 | + | 348 | WP_032430827.1 | hypothetical protein | - |
| HV232_RS24635 () | 110347..110493 | + | 147 | WP_001159045.1 | hypothetical protein | - |
| HV232_RS24640 () | 110540..111373 | + | 834 | WP_032430826.1 | type I restriction-modification system subunit M | - |
| HV232_RS24645 () | 112020..112550 | + | 531 | WP_032430825.1 | antirestriction protein | - |
| HV232_RS24650 () | 112561..113016 | - | 456 | WP_032430824.1 | hypothetical protein | VF |
| HV232_RS24655 () | 113485..113868 | + | 384 | WP_015062650.1 | relaxosome protein TraM | - |
| HV232_RS24660 () | 114165..114614 | + | 450 | WP_020833561.1 | helix-turn-helix domain-containing protein | - |
| HV232_RS24665 () | 114820..115053 | + | 234 | WP_032430823.1 | TraY domain-containing protein | - |
| HV232_RS24670 () | 115171..115530 | + | 360 | WP_032430822.1 | type IV conjugative transfer system pilin TraA | - |
| HV232_RS24675 () | 115532..115837 | + | 306 | WP_000398849.1 | type IV conjugative transfer system protein TraL | - |
| HV232_RS24680 () | 115857..116420 | + | 564 | WP_032430821.1 | type IV conjugative transfer system protein TraE | - |
| HV232_RS24685 () | 116410..117150 | + | 741 | WP_032430820.1 | type-F conjugative transfer system secretin TraK | - |
| HV232_RS24690 () | 117137..118498 | + | 1362 | WP_032430819.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HV232_RS24695 () | 118608..118827 | + | 220 | Protein_128 | TraR/DksA C4-type zinc finger protein | - |
| HV232_RS24700 () | 118840..119292 | + | 453 | WP_032430818.1 | hypothetical protein | - |
| HV232_RS24705 () | 119310..119909 | + | 600 | WP_047715683.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HV232_RS24710 () | 119920..122511 | + | 2592 | WP_032430816.1 | type IV secretion system protein TraC | - |
| HV232_RS24715 () | 122508..122972 | + | 465 | WP_032430815.1 | type-F conjugative transfer system protein TrbI | - |
| HV232_RS24720 () | 122972..123607 | + | 636 | WP_032430814.1 | type-F conjugative transfer system protein TraW | - |
| HV232_RS24725 () | 123604..124599 | + | 996 | WP_032430813.1 | conjugal transfer pilus assembly protein TraU | - |
| HV232_RS24730 () | 124610..124978 | + | 369 | WP_032430812.1 | hypothetical protein | - |
| HV232_RS24735 () | 124975..125589 | + | 615 | WP_032430811.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HV232_RS24740 () | 125586..127439 | + | 1854 | WP_032430810.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HV232_RS24745 () | 127436..128215 | + | 780 | WP_071446640.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HV232_RS24750 () | 128241..128852 | + | 612 | WP_032430808.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HV232_RS24755 () | 128852..130213 | + | 1362 | WP_032430807.1 | F-type conjugal transfer protein TraH | - |
| HV232_RS24760 () | 130215..133112 | + | 2898 | WP_047715678.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HV232_RS24765 () | 133124..133684 | + | 561 | WP_047715676.1 | hypothetical protein | - |
| HV232_RS24770 () | 133860..134597 | + | 738 | WP_047715675.1 | complement resistance protein TraT | - |
| HV232_RS24775 () | 134748..136982 | + | 2235 | WP_047715674.1 | type IV conjugative transfer system coupling protein TraD | - |
| HV232_RS24780 () | 136982..142285 | + | 5304 | WP_047715673.1 | Multifunctional conjugation protein TraI | Relaxase |
| HV232_RS24785 () | 142304..142870 | + | 567 | WP_047715672.1 | DUF2726 domain-containing protein | - |
| HV232_RS24790 () | 142867..143598 | + | 732 | WP_071446724.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| HV232_RS24795 () | 143640..143993 | + | 354 | WP_047715670.1 | hypothetical protein | - |
| HV232_RS24800 () | 144142..144705 | + | 564 | WP_047715669.1 | Phospholipase D | VF |
| HV232_RS24805 () | 144837..145079 | + | 243 | WP_000078032.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|