MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 78886 bp
Accession: NZ_CP054355 Location: 1..78886 Organism: Escherichia coli strain SCU-172 Replicon: plasmid pSCU-172-2
Accession: NZ_CP054355 Location: 1..78886 Organism: Escherichia coli strain SCU-172 Replicon: plasmid pSCU-172-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE50_RS25985 () | 1..978 | + | 978 | WP_001309253.1 | RepB family plasmid replication initiator protein | - |
| HPE50_RS25990 () | 1221..1961 | - | 741 | WP_001066947.1 | IS91 family transposase ISMno23 | Transposase |
| HPE50_RS25995 () | 2082..2270 | - | 189 | WP_001332784.1 | hypothetical protein | - |
| HPE50_RS26000 () | 2642..3811 | + | 1170 | WP_001072359.1 | hypothetical protein | - |
| HPE50_RS26005 () | 4037..4212 | - | 176 | Protein_4 | IS3 family transposase | - |
| HPE50_RS26010 () | 4658..4930 | - | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| HPE50_RS26015 () | 5455..5891 | - | 437 | Protein_6 | IS3 family transposase IS2 | Transposase |
| HPE50_RS26020 () | 6173..8143 | + | 1971 | WP_001298664.1 | Hemin receptor | VF |
| HPE50_RS26025 () | 8150..8941 | + | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| HPE50_RS26030 () | 9004..9612 | - | 609 | Protein_9 | IS66 family transposase ISEc22 | Transposase |
| HPE50_RS26035 () | 9680..10459 | - | 780 | WP_001323403.1 | IS21 family transposase IS100kyp | Transposase |
| HPE50_RS26040 () | 10459..11481 | - | 1023 | WP_001310017.1 | IS21 family transposase IS100kyp | Transposase |
| HPE50_RS26045 () | 11567..12502 | - | 936 | Protein_12 | IS66 family transposase ISEc22 | Transposase |
| HPE50_RS26050 () | 12551..12898 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| HPE50_RS26055 () | 12895..13299 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| HPE50_RS26060 () | 13379..14451 | - | 1073 | Protein_15 | IS3 family transposase IS629 | Transposase |
| HPE50_RS26065 () | 14553..14813 | + | 261 | WP_000371882.1 | hypothetical protein | - |
| HPE50_RS26070 () | 14810..15319 | + | 510 | WP_000194542.1 | hypothetical protein | - |
| HPE50_RS26075 () | 15339..15686 | - | 348 | WP_000142452.1 | hypothetical protein | - |
| HPE50_RS26080 () | 15815..16150 | + | 336 | WP_001080732.1 | colicin transporter | - |
| HPE50_RS26085 () | 17601..18287 | + | 687 | Protein_20 | replication initiation protein | - |
| HPE50_RS26090 () | 18619..19494 | + | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| HPE50_RS26095 () | 19502..20278 | + | 777 | WP_000981091.1 | energy transducer TonB | - |
| HPE50_RS26100 () | 20447..22708 | + | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| HPE50_RS26105 () | 22777..23952 | + | 1176 | WP_001020413.1 | putative protein YncE | VF |
| HPE50_RS26110 () | 24475..24780 | - | 306 | Protein_25 | IS91 family transposase ISSbo1 | Transposase |
| HPE50_RS26115 () | 24806..26019 | + | 1214 | WP_164965807.1 | IS3 family transposase IS629 | Transposase |
| HPE50_RS26120 () | 26022..26591 | - | 570 | WP_001336919.1 | Serine protease EspC | VF |
| HPE50_RS26125 () | 26693..27673 | + | 981 | WP_000019441.1 | IS5 family transposase ISKpn26 | Transposase |
| HPE50_RS26130 () | 27823..28455 | - | 633 | Protein_29 | histidine-type phosphatase | - |
| HPE50_RS26135 () | 28577..29062 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| HPE50_RS26140 () | 29087..29572 | - | 486 | WP_021569868.1 | TlpA family protein disulfide reductase | - |
| HPE50_RS26145 () | 29559..30254 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| HPE50_RS26150 () | 30259..31389 | - | 1131 | WP_000729219.1 | ABC transporter permease | - |
| HPE50_RS26155 () | 31379..32662 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| HPE50_RS26160 () | 32665..34044 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| HPE50_RS26165 () | 34148..34675 | - | 528 | WP_000178050.1 | iron transporter | - |
| HPE50_RS26170 () | 34716..36602 | - | 1887 | WP_001332815.1 | FTR1 family iron permease | - |
| HPE50_RS26175 () | 36949..37764 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| HPE50_RS26180 () | 37947..38453 | - | 507 | WP_000949451.1 | protein disulfide oxidoreductase | - |
| HPE50_RS26185 () | 38443..38601 | - | 159 | WP_000449408.1 | DsbA family protein | - |
| HPE50_RS26190 () | 38907..39203 | - | 297 | Protein_41 | IS110 family transposase | - |
| HPE50_RS26195 () | 39257..39574 | - | 318 | Protein_42 | IS6 family transposase IS26 | Transposase |
| HPE50_RS26200 () | 39607..42594 | - | 2988 | WP_174183295.1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| HPE50_RS26205 () | 42761..43402 | + | 642 | WP_024221658.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HPE50_RS26210 () | 43456..43845 | - | 390 | Protein_45 | hypothetical protein | - |
| HPE50_RS26215 () | 43893..44057 | - | 165 | WP_001388374.1 | hypothetical protein | Toxin Detail |
| HPE50_RS26220 () | 44054..44323 | - | 270 | WP_000079939.1 | hypothetical protein | Antitoxin Detail |
| HPE50_RS26225 () | 44396..44536 | - | 141 | WP_021503378.1 | hypothetical protein | - |
| HPE50_RS26230 () | 45237..46094 | - | 858 | WP_032251529.1 | incFII family plasmid replication initiator RepA | - |
| HPE50_RS26235 () | 46087..46161 | - | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| HPE50_RS26240 () | 46406..46654 | - | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| HPE50_RS26245 () | 46894..47484 | - | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| HPE50_RS26250 () | 47522..47731 | - | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| HPE50_RS26255 () | 47777..48238 | - | 462 | WP_000978819.1 | thermonuclease family protein | - |
| HPE50_RS26260 () | 48483..48695 | - | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| HPE50_RS26265 () | 48827..49387 | - | 561 | WP_059339177.1 | fertility inhibition protein FinO | - |
| HPE50_RS26270 () | 49490..50350 | - | 861 | WP_000704523.1 | putative protein YcjY | VF |
| HPE50_RS26275 () | 50409..51155 | - | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| HPE50_RS26280 () | 51175..56445 | - | 5271 | WP_174183296.1 | Multifunctional conjugation protein TraI | Relaxase |
| HPE50_RS26285 () | 56445..58670 | - | 2226 | WP_174183297.1 | type IV conjugative transfer system coupling protein TraD | - |
| HPE50_RS26290 () | 58721..59458 | - | 738 | WP_000199905.1 | hypothetical protein | - |
| HPE50_RS26295 () | 59661..60392 | - | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| HPE50_RS26300 () | 60406..60915 | - | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| HPE50_RS26305 () | 60912..63737 | - | 2826 | WP_174183298.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HPE50_RS26310 () | 63734..65107 | - | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| HPE50_RS26315 () | 65094..65519 | - | 426 | WP_001323332.1 | F-type conjugal transfer protein TrbF | - |
| HPE50_RS26320 () | 65467..65814 | - | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| HPE50_RS26325 () | 65744..66289 | - | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HPE50_RS26330 () | 66276..66560 | - | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HPE50_RS26335 () | 66641..66976 | + | 336 | WP_000736414.1 | hypothetical protein | - |
| HPE50_RS26340 () | 66957..67298 | - | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| HPE50_RS26345 () | 67312..68055 | - | 744 | WP_001030385.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HPE50_RS26350 () | 68048..68305 | - | 258 | WP_000864309.1 | conjugal transfer protein TrbE | - |
| HPE50_RS26355 () | 68332..70182 | - | 1851 | WP_096985919.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HPE50_RS26360 () | 70179..70658 | - | 480 | Protein_75 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HPE50_RS26365 () | 70714..71411 | + | 698 | Protein_76 | IS1 family transposase IS1R | Transposase |
| HPE50_RS26370 () | 71427..72134 | - | 708 | Protein_77 | plasmid segregation protein parM | - |
| HPE50_RS26375 () | 72363..73007 | + | 645 | WP_000633911.1 | AAA family ATPase | - |
| HPE50_RS26380 () | 73001..73276 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| HPE50_RS26385 () | 73414..74223 | - | 810 | WP_000016979.1 | site-specific integrase | - |
| HPE50_RS26390 () | 74224..74529 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | - |
| HPE50_RS26395 () | 74531..74749 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| HPE50_RS26400 () | 77071..77712 | + | 642 | WP_000990668.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|