MGE detailed information
MGE type: Conjugative plasmid MGE length: 82764 bp
Accession: NZ_CP054354 Location: 1..82764 Organism: Escherichia coli strain SCU-172 Replicon: plasmid pSCU-172-1
Accession: NZ_CP054354 Location: 1..82764 Organism: Escherichia coli strain SCU-172 Replicon: plasmid pSCU-172-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE50_RS25520 () | 1..1032 | + | 1032 | WP_000907880.1 | replication initiation protein | - |
| HPE50_RS25525 () | 1940..2224 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HPE50_RS25530 () | 2224..2499 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HPE50_RS25535 () | 2605..2886 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| HPE50_RS25540 () | 3077..3343 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| HPE50_RS25545 () | 3343..3819 | - | 477 | WP_001401995.1 | hypothetical protein | - |
| HPE50_RS25550 () | 3875..4477 | - | 603 | WP_000517694.1 | hypothetical protein | - |
| HPE50_RS25555 () | 4831..6177 | + | 1347 | WP_001132017.1 | hypothetical protein | - |
| HPE50_RS25560 () | 6680..6982 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| HPE50_RS25565 () | 6979..7605 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| HPE50_RS25570 () | 7817..9088 | - | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| HPE50_RS25575 () | 9088..9525 | - | 438 | WP_174183291.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HPE50_RS25580 () | 9522..9770 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HPE50_RS25585 () | 10189..11091 | + | 903 | WP_001330417.1 | DUF1281 domain-containing protein | - |
| HPE50_RS25590 () | 11088..11400 | + | 313 | Protein_14 | hypothetical protein | - |
| HPE50_RS25595 () | 11476..12159 | + | 684 | WP_000086137.1 | DNA methylase | - |
| HPE50_RS25600 () | 12160..12381 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| HPE50_RS25605 () | 12395..12829 | + | 435 | WP_000274421.1 | DUF1380 family protein | - |
| HPE50_RS25610 () | 12874..13644 | + | 771 | WP_001006204.1 | hypothetical protein | - |
| HPE50_RS25615 () | 13619..14087 | + | 469 | Protein_19 | DUF1472 domain-containing protein | - |
| HPE50_RS25620 () | 14183..14485 | + | 303 | WP_072112202.1 | antirestriction protein | - |
| HPE50_RS25625 () | 14532..14954 | + | 423 | WP_001546488.1 | DUF1380 family protein | - |
| HPE50_RS25630 () | 14951..15142 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| HPE50_RS25635 () | 15280..15561 | + | 282 | WP_154671919.1 | hypothetical protein | - |
| HPE50_RS25640 () | 15914..16441 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| HPE50_RS25645 () | 16499..16732 | + | 234 | WP_174183292.1 | DUF905 domain-containing protein | - |
| HPE50_RS25650 () | 16791..18749 | + | 1959 | WP_001145476.1 | ParB/RepB/Spo0J family partition protein | - |
| HPE50_RS25655 () | 18804..19238 | + | 435 | WP_000845903.1 | conjugation system SOS inhibitor PsiB | - |
| HPE50_RS25660 () | 19235..19954 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| HPE50_RS25665 () | 19951..20547 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| HPE50_RS25670 () | 20619..21088 | + | 470 | Protein_30 | DUF1472 domain-containing protein | - |
| HPE50_RS25675 () | 21009..21509 | + | 501 | WP_000117631.1 | antirestriction protein ArdA | - |
| HPE50_RS25680 () | 22242..22676 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| HPE50_RS25685 () | 22769..23035 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| HPE50_RS25690 () | 23212..23601 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| HPE50_RS25695 () | 23598..24512 | + | 915 | WP_000038334.1 | Recombination-promoting nuclease RpnA | VF |
| HPE50_RS25700 () | 24512..24745 | + | 234 | WP_001329993.1 | hypothetical protein | - |
| HPE50_RS25705 () | 24776..25027 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| HPE50_RS25710 () | 25605..26453 | + | 849 | WP_001077034.1 | DUF4942 domain-containing protein | - |
| HPE50_RS25715 () | 26539..26874 | - | 336 | WP_000157083.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HPE50_RS25720 () | 27107..27439 | + | 333 | WP_001291057.1 | hypothetical protein | - |
| HPE50_RS25725 () | 27451..30171 | + | 2721 | WP_174183293.1 | Protein TraI | Relaxase |
| HPE50_RS25730 () | 30392..32692 | - | 2301 | WP_170883214.1 | TraM recognition domain-containing protein | - |
| HPE50_RS25735 () | 32673..33797 | - | 1125 | WP_113525029.1 | DsbC family protein | - |
| HPE50_RS25740 () | 33794..35137 | - | 1344 | WP_174183294.1 | conjugal transfer protein TrbA | - |
| HPE50_RS25745 () | 36202..36453 | + | 252 | WP_001081066.1 | hypothetical protein | - |
| HPE50_RS25750 () | 36516..36692 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| HPE50_RS25755 () | 36843..37310 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| HPE50_RS25760 () | 37470..38093 | + | 624 | WP_001155250.1 | DNA-binding protein | - |
| HPE50_RS25765 () | 38291..38506 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| HPE50_RS25770 () | 38510..38878 | - | 369 | WP_001302696.1 | hypothetical protein | - |
| HPE50_RS25775 () | 39178..39420 | - | 243 | WP_001363144.1 | hypothetical protein | - |
| HPE50_RS25780 () | 39750..39902 | + | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| HPE50_RS25785 () | 40040..41626 | - | 1587 | WP_000004560.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| HPE50_RS25790 () | 41900..42553 | - | 654 | WP_001402874.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HPE50_RS25795 () | 42641..44806 | - | 2166 | WP_000691807.1 | DotA/TraY family protein | - |
| HPE50_RS25800 () | 44881..45450 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| HPE50_RS25805 () | 45447..46652 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| HPE50_RS25810 () | 46610..47230 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| HPE50_RS25815 () | 47230..50274 | - | 3045 | WP_001024766.1 | conjugal transfer protein | - |
| HPE50_RS25820 () | 50569..51387 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| HPE50_RS25825 () | 51302..51553 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| HPE50_RS25830 () | 51610..52008 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| HPE50_RS25835 () | 52055..52582 | - | 528 | WP_001388619.1 | conjugal transfer protein TraQ | - |
| HPE50_RS25840 () | 52582..53295 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| HPE50_RS25845 () | 53292..54629 | - | 1338 | WP_001272018.1 | conjugal transfer protein TraO | - |
| HPE50_RS25850 () | 54633..55607 | - | 975 | WP_000547385.1 | hypothetical protein | VF |
| HPE50_RS25855 () | 55618..56313 | - | 696 | WP_001287545.1 | DotI/IcmL family type IV secretion protein | - |
| HPE50_RS25860 () | 56325..56675 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| HPE50_RS25865 () | 56692..60753 | - | 4062 | WP_059332171.1 | DNA primase | - |
| HPE50_RS25870 () | 60817..61107 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| HPE50_RS25875 () | 61104..62252 | - | 1149 | WP_000775212.1 | putative protein YggR | VF |
| HPE50_RS25880 () | 62236..63072 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| HPE50_RS25885 () | 63069..63527 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| HPE50_RS25890 () | 63631..64833 | - | 1203 | WP_000979993.1 | conjugal transfer protein TraF | - |
| HPE50_RS25895 () | 64935..65756 | - | 822 | WP_000845373.1 | hypothetical protein | - |
| HPE50_RS25900 () | 66229..67590 | - | 1362 | WP_001168171.1 | hypothetical protein | VF |
| HPE50_RS25905 () | 67608..68234 | - | 627 | WP_000939245.1 | prepilin peptidase | - |
| HPE50_RS25910 () | 68250..68735 | - | 486 | WP_001080768.1 | hypothetical protein | VF |
| HPE50_RS25915 () | 68780..69316 | - | 537 | WP_000111534.1 | hypothetical protein | VF |
| HPE50_RS25920 () | 69378..70472 | - | 1095 | WP_000697158.1 | type II secretion system F family protein | - |
| HPE50_RS25925 () | 70474..71982 | - | 1509 | WP_000880807.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HPE50_RS25930 () | 72085..72543 | - | 459 | WP_000095885.1 | hypothetical protein | VF |
| HPE50_RS25935 () | 72533..73828 | - | 1296 | WP_000129883.1 | type 4b pilus protein PilO2 | - |
| HPE50_RS25940 () | 73849..75468 | - | 1620 | WP_001035565.1 | Outer membrane lipoprotein BfpB | VF |
| HPE50_RS25945 () | 75500..75937 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| HPE50_RS25950 () | 75941..77011 | - | 1071 | WP_083574971.1 | hypothetical protein | VF |
| HPE50_RS25955 () | 77238..77573 | - | 336 | WP_001335624.1 | hypothetical protein | - |
| HPE50_RS25960 () | 77689..78006 | - | 318 | WP_001330559.1 | PilI type IV pilus biogenesis protein | - |
| HPE50_RS25965 () | 78012..79706 | - | 1695 | WP_000482665.1 | flotillin family protein | - |
| HPE50_RS25970 () | 79733..80353 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| HPE50_RS25975 () | 80620..81282 | - | 663 | WP_000154142.1 | hypothetical protein | - |
| HPE50_RS25980 () | 81423..82064 | - | 642 | WP_000335849.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|