MGE detailed information
MGE type: Prophage MGE length: 61173 bp
Accession: NZ_CP053296 Location: 3011945..3073117 Organism: Escherichia coli strain M1/5 Replicon: chromosome
Accession: NZ_CP053296 Location: 3011945..3073117 Organism: Escherichia coli strain M1/5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HLK60_RS14560 () | 3007553..3008194 | + | 642 | WP_001295971.1 | high frequency lysogenization protein HflD | - |
| HLK60_RS14565 () | 3008198..3009568 | + | 1371 | WP_000423742.1 | adenylosuccinate lyase | - |
| HLK60_RS14570 () | 3009738..3010409 | + | 672 | WP_001265481.1 | two-component system response regulator PhoP | - |
| HLK60_RS14575 () | 3010409..3011869 | + | 1461 | WP_000735412.1 | two-component system sensor histidine kinase PhoQ | - |
| HLK60_RS14580 () | 3011945..3013066 | + | 1122 | WP_001295435.1 | [50S ribosomal protein L16]-arginine 3-hydroxylase | - |
| HLK60_RS14585 () | 3013115..3014341 | - | 1227 | WP_000359446.1 | peptidase T | - |
| HLK60_RS14590 () | 3014591..3015727 | + | 1137 | WP_000531578.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HLK60_RS14595 () | 3015711..3016574 | + | 864 | WP_001538615.1 | spermidine/putrescine ABC transporter permease PotB | - |
| HLK60_RS14600 () | 3016806..3017072 | - | 267 | WP_000937481.1 | tail fiber assembly protein | - |
| HLK60_RS14605 () | 3017129..3017797 | + | 669 | WP_000240999.1 | class I SAM-dependent methyltransferase | - |
| HLK60_RS14610 () | 3017852..3018436 | - | 585 | WP_000885577.1 | tail fiber assembly protein | - |
| HLK60_RS14615 () | 3018436..3021462 | - | 3027 | WP_000216487.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HLK60_RS14620 () | 3021614..3022213 | - | 600 | WP_001233154.1 | hypothetical protein | VF |
| HLK60_RS14625 () | 3022281..3025973 | - | 3693 | WP_178318148.1 | DUF1983 domain-containing protein | - |
| HLK60_RS14630 () | 3026317..3026949 | - | 633 | WP_128972936.1 | tail assembly protein | - |
| HLK60_RS14635 () | 3026895..3027638 | - | 744 | WP_001351101.1 | C40 family peptidase | - |
| HLK60_RS14640 () | 3027644..3028342 | - | 699 | WP_001351100.1 | phage minor tail protein L | - |
| HLK60_RS14645 () | 3028342..3028671 | - | 330 | WP_000847298.1 | phage tail protein | - |
| HLK60_RS14650 () | 3028668..3031229 | - | 2562 | WP_178318149.1 | phage tail tape measure protein | - |
| HLK60_RS14655 () | 3031210..3031623 | - | 414 | WP_000533453.1 | phage tail assembly protein T | - |
| HLK60_RS14660 () | 3031650..3032081 | - | 432 | WP_001309426.1 | phage minor tail protein G | - |
| HLK60_RS14665 () | 3032100..3032849 | - | 750 | WP_000235047.1 | phage tail protein | - |
| HLK60_RS14670 () | 3032857..3033252 | - | 396 | WP_000683079.1 | phage minor tail U family protein | - |
| HLK60_RS14675 () | 3033249..3033782 | - | 534 | WP_000974996.1 | phage tail protein | - |
| HLK60_RS14680 () | 3033798..3034151 | - | 354 | WP_001204533.1 | tail attachment protein | - |
| HLK60_RS14685 () | 3034144..3034518 | - | 375 | WP_000201530.1 | hypothetical protein | - |
| HLK60_RS14690 () | 3034570..3035598 | - | 1029 | WP_000522603.1 | major capsid protein | - |
| HLK60_RS14695 () | 3035656..3036003 | - | 348 | WP_000256814.1 | head decoration protein | - |
| HLK60_RS14700 () | 3036040..3037545 | - | 1506 | WP_001556921.1 | S49 family peptidase | - |
| HLK60_RS14705 () | 3037535..3039127 | - | 1593 | WP_001322425.1 | phage portal protein | - |
| HLK60_RS14710 () | 3039124..3039330 | - | 207 | WP_000258993.1 | head-tail joining protein | - |
| HLK60_RS14715 () | 3039314..3041242 | - | 1929 | WP_001309424.1 | phage terminase large subunit family protein | - |
| HLK60_RS14720 () | 3041214..3041723 | - | 510 | WP_000235436.1 | terminase small subunit | - |
| HLK60_RS14725 () | 3042206..3042559 | + | 354 | WP_001322427.1 | hypothetical protein | - |
| HLK60_RS14730 () | 3042682..3043008 | - | 327 | WP_000830178.1 | TonB family protein | - |
| HLK60_RS14735 () | 3043319..3043786 | - | 468 | WP_032142285.1 | lysis protein | - |
| HLK60_RS14740 () | 3043789..3043920 | - | 132 | WP_001280932.1 | hypothetical protein | - |
| HLK60_RS14745 () | 3043935..3044117 | - | 183 | WP_001446668.1 | hypothetical protein | - |
| HLK60_RS14750 () | 3044274..3044807 | - | 534 | WP_001092866.1 | lysozyme | - |
| HLK60_RS14755 () | 3044844..3045734 | - | 891 | WP_001037012.1 | YdfR family protein | - |
| HLK60_RS14760 () | 3045739..3045954 | - | 216 | WP_000284506.1 | class II holin family protein | - |
| HLK60_RS14765 () | 3046031..3046276 | - | 246 | WP_001556910.1 | DUF826 domain-containing protein | - |
| HLK60_RS14770 () | 3046314..3046496 | - | 183 | WP_001304601.1 | DUF1378 family protein | - |
| HLK60_RS14775 () | 3046633..3048595 | - | 1963 | Protein_2899 | DUF1737 domain-containing protein | - |
| HLK60_RS14780 () | 3048856..3049191 | + | 336 | WP_001443236.1 | anti-adapter protein IraM | - |
| HLK60_RS14785 () | 3049487..3049600 | - | 114 | WP_157835956.1 | DUF3927 family protein | - |
| HLK60_RS14790 () | 3049576..3049773 | - | 198 | WP_000917765.1 | hypothetical protein | - |
| HLK60_RS14795 () | 3049998..3050552 | - | 555 | WP_000640021.1 | DUF1133 family protein | - |
| HLK60_RS14800 () | 3050561..3050920 | - | 360 | WP_000904110.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HLK60_RS14805 () | 3050933..3051982 | - | 1050 | WP_001265310.1 | DUF968 domain-containing protein | - |
| HLK60_RS14810 () | 3051984..3052262 | - | 279 | WP_032141837.1 | hypothetical protein | - |
| HLK60_RS14815 () | 3052429..3052584 | - | 156 | WP_001443235.1 | type I toxin-antitoxin system toxin HokD | - |
| HLK60_RS14820 () | 3053143..3053657 | - | 515 | Protein_2908 | hypothetical protein | - |
| HLK60_RS14825 () | 3053654..3053830 | - | 177 | WP_000753058.1 | hypothetical protein | - |
| HLK60_RS14830 () | 3053823..3054005 | - | 183 | WP_001224662.1 | hypothetical protein | - |
| HLK60_RS14835 () | 3054099..3054455 | - | 357 | WP_000403778.1 | hypothetical protein | - |
| HLK60_RS14840 () | 3054433..3054576 | - | 144 | WP_000207966.1 | hypothetical protein | - |
| HLK60_RS14845 () | 3054587..3054850 | - | 264 | WP_000224233.1 | hypothetical protein | - |
| HLK60_RS14850 () | 3054852..3055070 | - | 219 | WP_000209148.1 | DUF4014 family protein | - |
| HLK60_RS14855 () | 3055103..3055315 | - | 213 | WP_000072553.1 | hypothetical protein | - |
| HLK60_RS14860 () | 3055421..3055843 | - | 423 | Protein_2916 | DUF977 family protein | - |
| HLK60_RS14865 () | 3055859..3056629 | - | 771 | WP_000450998.1 | DUF1627 domain-containing protein | - |
| HLK60_RS14870 () | 3056651..3057397 | - | 747 | WP_000788950.1 | IS21 family transposase ISAba8 | Transposase |
| HLK60_RS14875 () | 3057404..3058366 | - | 963 | WP_000095673.1 | helix-turn-helix domain-containing protein | - |
| HLK60_RS14880 () | 3058389..3058814 | - | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| HLK60_RS14885 () | 3058811..3059113 | - | 303 | WP_001556930.1 | transcriptional regulator | - |
| HLK60_RS14890 () | 3059211..3059582 | + | 372 | WP_001169687.1 | hypothetical protein | - |
| HLK60_RS14895 () | 3059603..3059794 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| HLK60_RS14900 () | 3059796..3060074 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HLK60_RS14905 () | 3060366..3060518 | + | 153 | WP_000380313.1 | DUF1391 family protein | - |
| HLK60_RS14910 () | 3060530..3060868 | + | 339 | WP_000394541.1 | hypothetical protein | - |
| HLK60_RS14915 () | 3060857..3061051 | - | 195 | WP_001295058.1 | hypothetical protein | - |
| HLK60_RS14920 () | 3061627..3061815 | + | 189 | WP_000449175.1 | cell division inhibitor | - |
| HLK60_RS14925 () | 3061812..3062000 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
| HLK60_RS14930 () | 3062093..3064531 | + | 2439 | WP_000102132.1 | exonuclease | - |
| HLK60_RS14935 () | 3064593..3064862 | + | 270 | WP_000003742.1 | excisionase | - |
| HLK60_RS14940 () | 3064831..3065949 | + | 1119 | WP_000074983.1 | hypothetical protein ; Integrase | Integrase |
| HLK60_RS14945 () | 3066116..3066910 | + | 795 | WP_000580316.1 | spermidine/putrescine ABC transporter permease PotC | - |
| HLK60_RS14950 () | 3066907..3067953 | + | 1047 | WP_000759310.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| HLK60_RS14955 () | 3068011..3068472 | + | 462 | WP_001298471.1 | DUF3592 domain-containing protein | - |
| HLK60_RS14960 () | 3068469..3069257 | + | 789 | WP_000723290.1 | TPM domain-containing protein | - |
| HLK60_RS14965 () | 3069395..3070216 | - | 822 | WP_001538573.1 | NAD-dependent protein deacylase | - |
| HLK60_RS14970 () | 3070232..3071143 | - | 912 | WP_000291301.1 | N-acetylglucosamine kinase | - |
| HLK60_RS14975 () | 3071172..3072416 | - | 1245 | WP_001251368.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| HLK60_RS14980 () | 3072416..3073117 | - | 702 | WP_001538569.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| HLK60_RS14985 () | 3073110..3074309 | - | 1200 | WP_000284714.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
| HLK60_RS14990 () | 3074570..3075643 | + | 1074 | WP_001538568.1 | acyltransferase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|