MGE detailed information
MGE type: Conjugative plasmid MGE length: 159399 bp
Accession: NZ_CP053235 Location: 1..159399 Organism: Escherichia coli strain SCU-106 Replicon: plasmid pSCU-106-1
Accession: NZ_CP053235 Location: 1..159399 Organism: Escherichia coli strain SCU-106 Replicon: plasmid pSCU-106-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ24_RS25255 () | 1..873 | + | 873 | WP_001536607.1 | incFII family plasmid replication initiator RepA | - |
| HHJ24_RS25260 () | 1833..2084 | + | 252 | WP_032331134.1 | antitoxin | Antitoxin Detail |
| HHJ24_RS25265 () | 2081..2368 | + | 288 | WP_032331135.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HHJ24_RS25270 () | 2472..3075 | + | 604 | Protein_3 | Serine acetyltransferase | VF |
| HHJ24_RS25275 () | 3267..3963 | + | 697 | Protein_4 | IS1 family transposase IS1X2 | Transposase |
| HHJ24_RS25280 () | 4219..5061 | + | 843 | WP_170969611.1 | polysaccharide deacetylase family protein | - |
| HHJ24_RS25285 () | 5064..6152 | + | 1089 | WP_072041713.1 | putative hexosyltransferase CapU | - |
| HHJ24_RS25290 () | 6157..7107 | + | 951 | WP_072041714.1 | virulence factor VirK | - |
| HHJ24_RS25295 () | 7172..8116 | + | 945 | WP_040208596.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| HHJ24_RS25300 () | 8178..8954 | - | 777 | Protein_9 | IS630 family transposase | - |
| HHJ24_RS25305 () | 9023..9569 | - | 547 | Protein_10 | IS1 family transposase | - |
| HHJ24_RS25310 () | 9615..10019 | + | 405 | Protein_11 | hypothetical protein | - |
| HHJ24_RS25315 () | 10087..10401 | + | 315 | WP_032331136.1 | hypothetical protein | - |
| HHJ24_RS25320 () | 10802..11668 | - | 867 | WP_001536599.1 | DMT family transporter | - |
| HHJ24_RS25325 () | 11661..12728 | - | 1068 | WP_170969594.1 | hypothetical protein | - |
| HHJ24_RS25330 () | 13065..13412 | + | 348 | WP_000142451.1 | hypothetical protein | - |
| HHJ24_RS25335 () | 14241..14864 | + | 624 | WP_000904945.1 | Tn3 family transposase TnpR_ISMpo10 | Transposase |
| HHJ24_RS25340 () | 14845..17802 | + | 2958 | WP_170969595.1 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| HHJ24_RS25345 () | 17948..18940 | + | 993 | WP_136763385.1 | hypothetical protein | - |
| HHJ24_RS25350 () | 18999..19616 | - | 618 | WP_136763386.1 | proQ/FINO family protein | - |
| HHJ24_RS25355 () | 19806..21362 | - | 1557 | WP_032331137.1 | AAA family ATPase | - |
| HHJ24_RS25360 () | 21625..22215 | - | 591 | WP_032331138.1 | hypothetical protein | - |
| HHJ24_RS25365 () | 22215..22448 | - | 234 | WP_032280055.1 | hypothetical protein | - |
| HHJ24_RS25370 () | 22777..23229 | + | 453 | WP_000670960.1 | N-acetyltransferase | - |
| HHJ24_RS25375 () | 23261..24190 | - | 930 | Protein_24 | monooxygenase | - |
| HHJ24_RS25380 () | 24276..24701 | + | 426 | WP_000422722.1 | IS66 family transposase ISEc23 | Transposase |
| HHJ24_RS25385 () | 24698..25048 | + | 351 | WP_000624684.1 | IS66 family transposase ISEc47 | Transposase |
| HHJ24_RS25390 () | 25079..26692 | + | 1614 | WP_170969401.1 | IS66 family transposase ISEc43 | Transposase |
| HHJ24_RS25395 () | 26722..27333 | - | 612 | WP_170969596.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| HHJ24_RS25400 () | 27330..27599 | - | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| HHJ24_RS25405 () | 27601..28617 | - | 1017 | WP_032280058.1 | Gfo/Idh/MocA family oxidoreductase | - |
| HHJ24_RS25410 () | 28620..29447 | - | 828 | WP_000154003.1 | HAD-IIB family hydrolase | - |
| HHJ24_RS25415 () | 29431..30669 | - | 1239 | WP_032331142.1 | 3-oxo-glucose-6-phosphate:glutamate aminotransferase | VF |
| HHJ24_RS25420 () | 31239..32153 | + | 915 | Protein_33 | AAA family ATPase | - |
| HHJ24_RS25425 () | 32240..33262 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| HHJ24_RS25430 () | 33262..34041 | + | 780 | WP_001297096.1 | IS21 family transposase IS100kyp | Transposase |
| HHJ24_RS25435 () | 34108..34764 | + | 657 | Protein_36 | AAA family ATPase | - |
| HHJ24_RS25440 () | 34821..35690 | - | 870 | WP_000253407.1 | hypothetical protein | - |
| HHJ24_RS25445 () | 35692..36780 | - | 1089 | WP_000952231.1 | hypothetical protein | - |
| HHJ24_RS25450 () | 37078..38010 | - | 933 | WP_000991830.1 | hypothetical protein | - |
| HHJ24_RS25455 () | 38014..39009 | - | 996 | WP_000246635.1 | hypothetical protein | - |
| HHJ24_RS25460 () | 39689..40102 | + | 414 | WP_000465034.1 | hypothetical protein | - |
| HHJ24_RS25465 () | 40104..40883 | + | 780 | WP_032331145.1 | site-specific integrase | - |
| HHJ24_RS25470 () | 41064..41708 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HHJ24_RS25475 () | 41795..42103 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HHJ24_RS25480 () | 42517..43497 | + | 981 | WP_032331146.1 | plasmid segregation protein ParM | - |
| HHJ24_RS25485 () | 43490..43906 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HHJ24_RS25490 () | 43908..45089 | - | 1182 | Protein_47 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HHJ24_RS25495 () | 45498..46586 | - | 1089 | WP_001459672.1 | hypothetical protein | - |
| HHJ24_RS25500 () | 47022..48122 | + | 1101 | WP_032160020.1 | DUF4935 domain-containing protein | - |
| HHJ24_RS25505 () | 48124..49083 | + | 960 | WP_011264071.1 | bacteriophage abortive infection AbiH family protein | - |
| HHJ24_RS25510 () | 49339..49779 | - | 441 | WP_011264070.1 | hypothetical protein | - |
| HHJ24_RS25515 () | 49781..51772 | - | 1992 | WP_053266037.1 | hypothetical protein | - |
| HHJ24_RS25520 () | 51769..53619 | - | 1851 | WP_170969556.1 | hypothetical protein | - |
| HHJ24_RS25525 () | 53619..55148 | - | 1530 | WP_001459668.1 | tyrosine-type recombinase/integrase | - |
| HHJ24_RS25530 () | 55249..55347 | - | 99 | Protein_55 | hypothetical protein | - |
| HHJ24_RS25535 () | 55347..55784 | - | 438 | WP_032285024.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HHJ24_RS25540 () | 55781..56029 | - | 249 | WP_000619113.1 | DinI-like family protein | - |
| HHJ24_RS25545 () | 56330..56572 | + | 243 | WP_032331148.1 | hypothetical protein | - |
| HHJ24_RS25550 () | 56670..57686 | + | 1017 | WP_000219395.1 | IS110 family transposase ISShdy1 | Transposase |
| HHJ24_RS25555 () | 58402..59304 | + | 903 | WP_077880838.1 | DUF1281 domain-containing protein | - |
| HHJ24_RS25560 () | 59301..59543 | + | 243 | WP_170969597.1 | hypothetical protein | - |
| HHJ24_RS25565 () | 59641..60657 | + | 1017 | WP_000219395.1 | IS110 family transposase ISShdy1 | Transposase |
| HHJ24_RS25570 () | 61355..62038 | + | 684 | WP_032331152.1 | DNA methylase | - |
| HHJ24_RS25575 () | 62039..62260 | + | 222 | WP_001104892.1 | hypothetical protein | - |
| HHJ24_RS25580 () | 62273..62707 | + | 435 | WP_170969598.1 | DUF1380 family protein | - |
| HHJ24_RS25585 () | 62726..63283 | + | 558 | Protein_66 | hypothetical protein | - |
| HHJ24_RS25590 () | 63168..63739 | + | 572 | Protein_67 | DUF1472 domain-containing protein | - |
| HHJ24_RS25595 () | 63835..64137 | + | 303 | WP_001364029.1 | antirestriction protein | - |
| HHJ24_RS25600 () | 64184..64603 | + | 420 | WP_032331157.1 | DUF1380 family protein | - |
| HHJ24_RS25605 () | 64603..64794 | + | 192 | WP_001027048.1 | hypothetical protein | - |
| HHJ24_RS25610 () | 65152..65537 | - | 386 | Protein_71 | hypothetical protein | - |
| HHJ24_RS25615 () | 65547..66074 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| HHJ24_RS25620 () | 66132..66365 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| HHJ24_RS25625 () | 66424..68382 | + | 1959 | WP_032331161.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ24_RS25630 () | 68437..68871 | + | 435 | WP_000845949.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ24_RS25635 () | 68868..69587 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| HHJ24_RS25640 () | 69584..70180 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| HHJ24_RS25645 () | 70252..70721 | + | 470 | Protein_78 | DUF1472 domain-containing protein | - |
| HHJ24_RS25650 () | 70642..71142 | + | 501 | WP_000117624.1 | antirestriction protein ArdA | - |
| HHJ24_RS25655 () | 71874..72308 | + | 435 | WP_141436841.1 | post-segregation killing protein PndC | - |
| HHJ24_RS25660 () | 72402..72668 | + | 267 | WP_001546460.1 | hypothetical protein | - |
| HHJ24_RS25665 () | 72733..73683 | + | 951 | WP_032331164.1 | Recombination-promoting nuclease RpnA | VF |
| HHJ24_RS25670 () | 73683..73928 | + | 246 | WP_012605149.1 | hypothetical protein | - |
| HHJ24_RS25675 () | 73959..74210 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| HHJ24_RS25680 () | 74244..74439 | - | 196 | Protein_85 | hypothetical protein | - |
| HHJ24_RS25685 () | 74788..75636 | + | 849 | WP_170969599.1 | DUF4942 domain-containing protein | - |
| HHJ24_RS25690 () | 75721..76056 | - | 336 | WP_170969600.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HHJ24_RS25695 () | 76288..76620 | + | 333 | WP_001291058.1 | hypothetical protein | - |
| HHJ24_RS25700 () | 76632..79343 | + | 2712 | WP_170969601.1 | Protein TraI | Relaxase |
| HHJ24_RS25705 () | 79411..79842 | + | 432 | WP_077787260.1 | tolA family protein | - |
| HHJ24_RS25710 () | 79940..80170 | - | 231 | WP_071591569.1 | hypothetical protein | - |
| HHJ24_RS25715 () | 80637..82940 | - | 2304 | WP_170969602.1 | TraM recognition domain-containing protein | - |
| HHJ24_RS25720 () | 82921..84039 | - | 1119 | WP_170969603.1 | thioredoxin fold domain-containing protein | - |
| HHJ24_RS25725 () | 84036..85307 | - | 1272 | WP_170969604.1 | IncI1-type conjugal transfer protein TrbA | - |
| HHJ24_RS25730 () | 85723..86373 | + | 651 | WP_001536670.1 | IS66 family transposase IS679 | Transposase |
| HHJ24_RS25735 () | 86373..86720 | + | 348 | WP_001536669.1 | IS66 family transposase ISCro1 | Transposase |
| HHJ24_RS25740 () | 86740..87992 | + | 1253 | Protein_97 | IS66 family transposase ISCro1 | Transposase |
| HHJ24_RS25745 () | 88505..89737 | + | 1233 | WP_012601335.1 | group II intron reverse transcriptase/maturase | - |
| HHJ24_RS25750 () | 89820..89999 | + | 180 | Protein_99 | transposase domain-containing protein | - |
| HHJ24_RS25755 () | 90702..92750 | + | 2049 | WP_001536666.1 | TonB-dependent siderophore receptor IreA | - |
| HHJ24_RS25760 () | 92894..94092 | + | 1199 | Protein_101 | IS256 family transposase ISEc39 | Transposase |
| HHJ24_RS25765 () | 94600..94980 | + | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| HHJ24_RS25770 () | 94977..95163 | + | 187 | Protein_103 | IS66 family transposase ISEc8 | Transposase |
| HHJ24_RS25775 () | 95213..96751 | + | 1539 | WP_001536663.1 | IS66 family transposase ISEc8 | Transposase |
| HHJ24_RS25780 () | 96974..97165 | - | 192 | WP_000264909.1 | hypothetical protein | - |
| HHJ24_RS25785 () | 97175..97540 | - | 366 | WP_001536659.1 | hypothetical protein | - |
| HHJ24_RS25790 () | 97551..97742 | - | 192 | WP_000789660.1 | hypothetical protein | - |
| HHJ24_RS25795 () | 98045..101950 | - | 3906 | WP_062876447.1 | Serine protease EspP | VF |
| HHJ24_RS25805 () | 103859..104881 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| HHJ24_RS25810 () | 104881..105660 | + | 780 | WP_001297096.1 | IS21 family transposase IS100kyp | Transposase |
| HHJ24_RS25815 () | 105711..106087 | - | 377 | Protein_112 | thermonuclease family protein | - |
| HHJ24_RS25820 () | 106248..106871 | + | 624 | WP_001536653.1 | hypothetical protein | - |
| HHJ24_RS25825 () | 107200..107897 | - | 698 | Protein_114 | IS1 family transposase IS1D | Transposase |
| HHJ24_RS25830 () | 108391..109926 | + | 1536 | Protein_115 | lipid A phosphoethanolamine transferase | - |
| HHJ24_RS25835 () | 110019..110261 | - | 243 | WP_001536637.1 | hypothetical protein | - |
| HHJ24_RS25840 () | 110593..110745 | + | 153 | WP_001536636.1 | Hok/Gef family protein | - |
| HHJ24_RS25845 () | 110742..110903 | - | 162 | WP_001138649.1 | hypothetical protein | - |
| HHJ24_RS25850 () | 111286..111495 | + | 210 | WP_000062945.1 | HEAT repeat domain-containing protein | - |
| HHJ24_RS25855 () | 111560..112210 | - | 651 | WP_001536635.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HHJ24_RS25860 () | 112298..114463 | - | 2166 | WP_001536634.1 | DotA/TraY family protein | - |
| HHJ24_RS25865 () | 114536..115105 | - | 570 | WP_001536633.1 | conjugal transfer protein TraX | - |
| HHJ24_RS25870 () | 115102..116307 | - | 1206 | WP_001536632.1 | conjugal transfer protein TraW | - |
| HHJ24_RS25875 () | 116268..116885 | - | 618 | WP_001536631.1 | hypothetical protein | - |
| HHJ24_RS25880 () | 116885..119929 | - | 3045 | WP_001536630.1 | hypothetical protein | - |
| HHJ24_RS25885 () | 120154..120699 | + | 546 | WP_001369268.1 | hypothetical protein | - |
| HHJ24_RS25890 () | 120672..121052 | - | 381 | WP_000690882.1 | hypothetical protein | - |
| HHJ24_RS25895 () | 121052..121411 | - | 360 | WP_000379509.1 | hypothetical protein | - |
| HHJ24_RS25900 () | 121468..122286 | - | 819 | WP_073977914.1 | conjugal transfer protein TraT | - |
| HHJ24_RS25905 () | 122201..122452 | - | 252 | WP_001536628.1 | hypothetical protein | - |
| HHJ24_RS25910 () | 122509..122907 | - | 399 | WP_000086067.1 | hypothetical protein | - |
| HHJ24_RS25915 () | 122954..123481 | - | 528 | WP_001379391.1 | conjugal transfer protein TraQ | - |
| HHJ24_RS25920 () | 123481..124194 | - | 714 | WP_000787008.1 | conjugal transfer protein TraP | - |
| HHJ24_RS25925 () | 124191..125522 | - | 1332 | WP_033804619.1 | conjugal transfer protein TraO | - |
| HHJ24_RS25930 () | 125526..126500 | - | 975 | WP_033804618.1 | hypothetical protein | VF |
| HHJ24_RS25935 () | 126511..127206 | - | 696 | WP_001287263.1 | DotI/IcmL family type IV secretion protein | - |
| HHJ24_RS25940 () | 127218..127568 | - | 351 | WP_001056369.1 | hypothetical protein | - |
| HHJ24_RS25945 () | 127585..131652 | - | 4068 | WP_170969605.1 | DNA primase | - |
| HHJ24_RS25950 () | 131716..132006 | - | 291 | WP_000817799.1 | hypothetical protein | - |
| HHJ24_RS25955 () | 132003..133151 | - | 1149 | WP_001536623.1 | putative protein YggR | VF |
| HHJ24_RS25960 () | 133135..133971 | - | 837 | WP_170969606.1 | hypothetical protein | VF |
| HHJ24_RS25965 () | 133968..134420 | - | 453 | WP_001081199.1 | DotD/TraH family lipoprotein | - |
| HHJ24_RS25970 () | 134469..134639 | - | 171 | WP_170969607.1 | hypothetical protein | - |
| HHJ24_RS25975 () | 134779..135981 | - | 1203 | WP_113440979.1 | conjugal transfer protein TraF | - |
| HHJ24_RS25980 () | 136071..136892 | - | 822 | WP_113440978.1 | conjugal transfer protein TraE | - |
| HHJ24_RS25985 () | 137152..137472 | + | 321 | WP_000695052.1 | hypothetical protein | - |
| HHJ24_RS25990 () | 137564..137854 | - | 291 | WP_062859187.1 | hypothetical protein | - |
| HHJ24_RS25995 () | 137896..139065 | - | 1170 | WP_062859186.1 | site-specific integrase | - |
| HHJ24_RS26000 () | 139163..139588 | + | 426 | WP_000422722.1 | IS66 family transposase ISEc23 | Transposase |
| HHJ24_RS26005 () | 139585..139935 | + | 351 | WP_000624684.1 | IS66 family transposase ISEc47 | Transposase |
| HHJ24_RS26010 () | 139966..141579 | + | 1614 | WP_170969401.1 | IS66 family transposase ISEc43 | Transposase |
| HHJ24_RS26015 () | 141932..143296 | - | 1365 | WP_001168072.1 | hypothetical protein | VF |
| HHJ24_RS26020 () | 143301..143936 | - | 636 | WP_113440977.1 | prepilin peptidase | - |
| HHJ24_RS26025 () | 143955..144428 | - | 474 | WP_000870986.1 | hypothetical protein | VF |
| HHJ24_RS26030 () | 144482..145018 | - | 537 | WP_113440976.1 | prepilin-type cleavage/methylation domain-containing protein | - |
| HHJ24_RS26035 () | 145092..146192 | - | 1101 | WP_113440975.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HHJ24_RS26040 () | 146194..147702 | - | 1509 | WP_113440974.1 | Type II secretion system protein E | VF |
| HHJ24_RS26045 () | 147787..148239 | - | 453 | WP_113440973.1 | type IV pilus biogenesis protein PilP | - |
| HHJ24_RS26050 () | 148229..149524 | - | 1296 | WP_113440972.1 | type 4b pilus protein PilO2 | - |
| HHJ24_RS26055 () | 149545..151164 | - | 1620 | WP_001034996.1 | Outer membrane lipoprotein BfpB | VF |
| HHJ24_RS26060 () | 151195..151632 | - | 438 | WP_170969608.1 | type IV pilus biogenesis protein PilM | - |
| HHJ24_RS26065 () | 151637..152701 | - | 1065 | WP_170969609.1 | hypothetical protein | VF |
| HHJ24_RS26070 () | 152821..153246 | + | 426 | WP_170969610.1 | hypothetical protein | - |
| HHJ24_RS26075 () | 153239..154126 | - | 888 | WP_001536609.1 | hypothetical protein | - |
| HHJ24_RS26080 () | 154319..154636 | - | 318 | WP_001330559.1 | PilI type IV pilus biogenesis protein | - |
| HHJ24_RS26085 () | 154642..156336 | - | 1695 | WP_000482662.1 | flotillin family protein | - |
| HHJ24_RS26090 () | 156363..156983 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| HHJ24_RS26095 () | 157250..157915 | - | 666 | WP_001536608.1 | hypothetical protein | - |
| HHJ24_RS26100 () | 158056..158697 | - | 642 | WP_000335842.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|