MGE detailed information
MGE type: Prophage MGE length: 45545 bp
Accession: NZ_CP053079 Location: 2667741..2713285 Organism: Escherichia coli strain K56-43-un Replicon: chromosome
Accession: NZ_CP053079 Location: 2667741..2713285 Organism: Escherichia coli strain K56-43-un Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK408_RS12490 () | 2663862..2664434 | - | 573 | WP_001526988.1 | cytolethal distending toxin type IV subunit CdtC | - |
| HK408_RS12495 () | 2664431..2665252 | - | 822 | WP_000734594.1 | cytolethal distending toxin type IV nuclease subunit CdtB | - |
| HK408_RS12500 () | 2665249..2665962 | - | 714 | WP_001526986.1 | cytolethal distending toxin type IV subunit CdtA | - |
| HK408_RS12505 () | 2666475..2666765 | - | 291 | WP_021522086.1 | hypothetical protein | - |
| HK408_RS12510 () | 2666776..2667459 | - | 684 | WP_021522085.1 | tail fiber domain-containing protein | - |
| HK408_RS12515 () | 2667472..2667741 | - | 270 | WP_001544317.1 | hypothetical protein | - |
| HK408_RS12520 () | 2667741..2670098 | - | 2358 | WP_178943717.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HK408_RS12525 () | 2670163..2670762 | - | 600 | WP_021522083.1 | hypothetical protein | VF |
| HK408_RS12530 () | 2670830..2674312 | - | 3483 | WP_021554132.1 | host specificity protein J | - |
| HK408_RS12535 () | 2674374..2675021 | - | 648 | WP_011703559.1 | tail assembly protein | - |
| HK408_RS12540 () | 2674919..2675662 | - | 744 | WP_000194743.1 | C40 family peptidase | - |
| HK408_RS12545 () | 2675667..2676365 | - | 699 | WP_001526979.1 | phage minor tail protein L | - |
| HK408_RS12550 () | 2676365..2676703 | - | 339 | WP_000024053.1 | phage tail protein | - |
| HK408_RS12555 () | 2676696..2679929 | - | 3234 | WP_001526976.1 | phage tail tape measure protein | - |
| HK408_RS12565 () | 2680401..2680760 | - | 360 | WP_122990068.1 | hypothetical protein | - |
| HK408_RS12570 () | 2680943..2681872 | - | 930 | WP_001314678.1 | hypothetical protein | - |
| HK408_RS12575 () | 2681899..2682291 | - | 393 | WP_000144680.1 | hypothetical protein | - |
| HK408_RS12580 () | 2682288..2682668 | - | 381 | WP_001029819.1 | hypothetical protein | - |
| HK408_RS12585 () | 2682669..2683052 | - | 384 | WP_000524259.1 | hypothetical protein | - |
| HK408_RS12590 () | 2683052..2683447 | - | 396 | WP_000634212.1 | hypothetical protein | - |
| HK408_RS12595 () | 2683451..2683627 | - | 177 | WP_000908084.1 | hypothetical protein | - |
| HK408_RS12600 () | 2683670..2684809 | - | 1140 | WP_016242649.1 | hypothetical protein | - |
| HK408_RS12605 () | 2684908..2685672 | - | 765 | WP_000770037.1 | hypothetical protein | - |
| HK408_RS12610 () | 2685777..2686889 | - | 1113 | WP_001317036.1 | hypothetical protein | - |
| HK408_RS12615 () | 2686873..2688279 | - | 1407 | WP_000763705.1 | DUF4055 domain-containing protein | - |
| HK408_RS12620 () | 2688282..2689583 | - | 1302 | WP_000625349.1 | terminase family protein | - |
| HK408_RS12625 () | 2689564..2690658 | - | 1095 | WP_000089437.1 | terminase small subunit | - |
| HK408_RS12630 () | 2690662..2690913 | - | 252 | WP_000613571.1 | hypothetical protein | - |
| HK408_RS12635 () | 2690849..2691781 | - | 933 | WP_001204031.1 | hypothetical protein | - |
| HK408_RS12640 () | 2691774..2692565 | - | 792 | WP_001291096.1 | ParB/Srx family N-terminal domain-containing protein | - |
| HK408_RS12645 () | 2692703..2694160 | - | 1458 | WP_024187724.1 | Trk system potassium transporter TrkG | - |
| HK408_RS12650 () | 2694357..2694542 | - | 186 | WP_001228693.1 | Rz1 family lipoprotein | - |
| HK408_RS12655 () | 2694759..2695256 | - | 498 | WP_001526961.1 | lysozyme RrrD | - |
| HK408_RS12660 () | 2695256..2695471 | - | 216 | WP_000839596.1 | phage lysis protein EssD | - |
| HK408_RS12675 () | 2696764..2697300 | - | 537 | WP_000640127.1 | DUF1133 family protein | - |
| HK408_RS12680 () | 2697297..2697587 | - | 291 | WP_000228021.1 | DUF1364 domain-containing protein | - |
| HK408_RS12685 () | 2697587..2698186 | - | 600 | WP_001526959.1 | DUF1367 family protein | - |
| HK408_RS12690 () | 2698694..2699179 | - | 486 | WP_000818163.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| HK408_RS12695 () | 2699198..2699377 | - | 180 | WP_000119355.1 | hypothetical protein | - |
| HK408_RS12700 () | 2699586..2699741 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - () | 2699753..2699811 | + | 59 | - | - | Antitoxin Detail |
| HK408_RS12705 () | 2699979..2700644 | - | 666 | WP_021554705.1 | epoxyqueuosine reductase QueH | - |
| HK408_RS12710 () | 2700829..2701245 | - | 417 | WP_001151236.1 | DUF977 family protein | - |
| HK408_RS12715 () | 2701261..2701974 | - | 714 | WP_001526958.1 | DUF1627 domain-containing protein | - |
| HK408_RS12720 () | 2701997..2702743 | - | 747 | WP_001526957.1 | ATP-binding protein | - |
| HK408_RS12725 () | 2702750..2703607 | - | 858 | WP_001526956.1 | DUF1376 domain-containing protein | - |
| HK408_RS12730 () | 2703620..2704042 | - | 423 | WP_021522079.1 | phage protein | - |
| HK408_RS12735 () | 2704039..2704281 | - | 243 | WP_001033914.1 | helix-turn-helix domain-containing protein | - |
| HK408_RS12740 () | 2704378..2704797 | + | 420 | WP_000410102.1 | helix-turn-helix domain-containing protein | - |
| HK408_RS12745 () | 2705245..2705400 | + | 156 | WP_001169154.1 | DUF1391 family protein | - |
| HK408_RS12750 () | 2705397..2705825 | - | 429 | WP_001302843.1 | superinfection exclusion B family protein | - |
| HK408_RS12755 () | 2706317..2706538 | + | 222 | WP_000560230.1 | killing protein KilR | - |
| HK408_RS12760 () | 2706532..2706708 | + | 177 | WP_000245522.1 | hypothetical protein | - |
| HK408_RS12765 () | 2706783..2707057 | + | 275 | Protein_2504 | hypothetical protein | - |
| HK408_RS12770 () | 2707159..2710230 | + | 3072 | WP_021522077.1 | exodeoxyribonuclease VIII | - |
| HK408_RS12775 () | 2710242..2711294 | + | 1053 | WP_001526952.1 | recombinase RecT | - |
| HK408_RS12780 () | 2711358..2711552 | + | 195 | WP_021500490.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| HK408_RS12785 () | 2711545..2711733 | + | 189 | WP_001383994.1 | DUF1187 family protein | - |
| - () | 2711551..2711729 | - | 179 | NuclAT_0 | - | - |
| - () | 2711551..2711729 | - | 179 | NuclAT_0 | - | - |
| - () | 2711551..2711729 | - | 179 | NuclAT_0 | - | - |
| - () | 2711551..2711729 | - | 179 | NuclAT_0 | - | - |
| HK408_RS12790 () | 2711833..2712048 | + | 216 | WP_000079604.1 | excisionase XisR | - |
| HK408_RS12795 () | 2712050..2713285 | + | 1236 | WP_001526950.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HK408_RS12800 () | 2713337..2714272 | + | 936 | WP_001157378.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| HK408_RS12805 () | 2714401..2715774 | - | 1374 | WP_000123774.1 | ATP-dependent RNA helicase DbpA | - |
| HK408_RS12810 () | 2716252..2717235 | - | 984 | WP_000387388.1 | zinc transporter ZntB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|