MGE detailed information
MGE type: Conjugative plasmid MGE length: 83503 bp
Accession: NZ_CP051720 Location: 1..83503 Organism: Escherichia coli strain SCU-116 Replicon: plasmid pSCU-116-1
Accession: NZ_CP051720 Location: 1..83503 Organism: Escherichia coli strain SCU-116 Replicon: plasmid pSCU-116-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ31_RS24130 () | 1..873 | + | 873 | WP_052945777.1 | incFII family plasmid replication initiator RepA | - |
| HHJ31_RS24135 () | 1778..2062 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HHJ31_RS24140 () | 2062..2337 | + | 276 | WP_052945776.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HHJ31_RS24145 () | 2447..2728 | + | 282 | WP_087880289.1 | hypothetical protein | - |
| HHJ31_RS25045 () | 2919..3185 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| HHJ31_RS24150 () | 3323..3925 | - | 603 | WP_001546468.1 | hypothetical protein | - |
| HHJ31_RS24155 () | 4279..5625 | + | 1347 | WP_001132021.1 | hypothetical protein | - |
| HHJ31_RS24160 () | 6192..6494 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| HHJ31_RS24165 () | 6491..7117 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| HHJ31_RS24170 () | 7313..8584 | - | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| HHJ31_RS24175 () | 8584..9021 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HHJ31_RS24180 () | 9018..9266 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HHJ31_RS24185 () | 9685..10587 | + | 903 | WP_148999481.1 | DUF1281 domain-containing protein | - |
| HHJ31_RS24190 () | 10584..10896 | + | 313 | Protein_13 | hypothetical protein | - |
| HHJ31_RS24195 () | 10972..11655 | + | 684 | WP_000086137.1 | DNA methylase | - |
| HHJ31_RS24200 () | 11656..11877 | + | 222 | WP_001104871.1 | hypothetical protein | - |
| HHJ31_RS24205 () | 11771..12325 | + | 555 | WP_077635412.1 | DUF1380 family protein | - |
| HHJ31_RS24210 () | 12370..13140 | + | 771 | WP_063117894.1 | hypothetical protein | - |
| HHJ31_RS24225 () | 13678..13980 | + | 303 | WP_001666994.1 | antirestriction protein | - |
| HHJ31_RS24230 () | 14027..14449 | + | 423 | WP_000271732.1 | DUF1380 family protein | - |
| HHJ31_RS24235 () | 14446..14637 | + | 192 | WP_001703906.1 | hypothetical protein | - |
| HHJ31_RS25050 () | 14970..15038 | - | 69 | Protein_21 | pilus protein | - |
| HHJ31_RS24240 () | 15407..15934 | + | 528 | WP_001276104.1 | single-stranded DNA-binding protein | - |
| HHJ31_RS24245 () | 15992..16225 | + | 234 | WP_000006016.1 | DUF905 domain-containing protein | - |
| HHJ31_RS24250 () | 16284..18242 | + | 1959 | WP_169063389.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ31_RS24255 () | 18297..18731 | + | 435 | WP_052945839.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ31_RS24260 () | 18728..19447 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| HHJ31_RS24265 () | 19444..20040 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| HHJ31_RS24275 () | 20502..21002 | + | 501 | WP_014065718.1 | antirestriction protein ArdA | - |
| HHJ31_RS24280 () | 21734..22168 | + | 435 | WP_032326213.1 | hypothetical protein | - |
| HHJ31_RS24285 () | 22261..22527 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| HHJ31_RS24290 () | 22704..23093 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| HHJ31_RS24295 () | 23090..24004 | + | 915 | WP_052990538.1 | Recombination-promoting nuclease RpnA | VF |
| HHJ31_RS24300 () | 24065..24259 | + | 195 | WP_001681710.1 | hypothetical protein | - |
| HHJ31_RS24305 () | 24290..24541 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| HHJ31_RS24310 () | 24575..24771 | - | 197 | Protein_35 | hypothetical protein | - |
| HHJ31_RS24315 () | 25120..25968 | + | 849 | WP_169063390.1 | DUF4942 domain-containing protein | - |
| HHJ31_RS24320 () | 26054..26389 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HHJ31_RS24325 () | 26622..26954 | + | 333 | WP_001291057.1 | hypothetical protein | - |
| HHJ31_RS24330 () | 26966..29686 | + | 2721 | WP_052984760.1 | Protein TraI | Relaxase |
| HHJ31_RS24335 () | 29907..32207 | - | 2301 | WP_000077662.1 | TraM recognition domain-containing protein | - |
| HHJ31_RS24340 () | 32188..33312 | - | 1125 | WP_000152382.1 | DsbC family protein | - |
| HHJ31_RS24345 () | 33309..34616 | - | 1308 | WP_169063391.1 | IncI1-type conjugal transfer protein TrbA | - |
| HHJ31_RS24350 () | 35701..35952 | + | 252 | WP_001081067.1 | hypothetical protein | - |
| HHJ31_RS24355 () | 36015..36191 | - | 177 | WP_169063392.1 | hypothetical protein | - |
| HHJ31_RS24360 () | 36343..36810 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| HHJ31_RS24365 () | 36969..37592 | + | 624 | WP_001155250.1 | DNA-binding protein | - |
| HHJ31_RS24370 () | 37790..38005 | - | 216 | WP_000266544.1 | hypothetical protein | - |
| HHJ31_RS24375 () | 38009..38377 | - | 369 | WP_001345852.1 | hypothetical protein | - |
| HHJ31_RS24380 () | 38668..38910 | - | 243 | WP_001401586.1 | hypothetical protein | - |
| HHJ31_RS24385 () | 39240..39392 | + | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| HHJ31_RS24390 () | 39530..41116 | - | 1587 | WP_000004564.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| HHJ31_RS24395 () | 41390..42037 | - | 648 | WP_015056434.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HHJ31_RS24400 () | 42125..44284 | - | 2160 | WP_021515450.1 | DotA/TraY family protein | - |
| HHJ31_RS24405 () | 44359..44928 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| HHJ31_RS24410 () | 44925..46130 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| HHJ31_RS24415 () | 46088..46708 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| HHJ31_RS24420 () | 46708..49752 | - | 3045 | WP_001024766.1 | conjugal transfer protein | - |
| HHJ31_RS24425 () | 50047..50865 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| HHJ31_RS24430 () | 50780..51031 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| HHJ31_RS24435 () | 51088..51486 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| HHJ31_RS24440 () | 51533..52060 | - | 528 | WP_001407937.1 | conjugal transfer protein TraQ | - |
| HHJ31_RS24445 () | 52060..52773 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| HHJ31_RS24450 () | 52770..54101 | - | 1332 | WP_001288254.1 | conjugal transfer protein TraO | - |
| HHJ31_RS24455 () | 54105..55079 | - | 975 | WP_000547383.1 | hypothetical protein | VF |
| HHJ31_RS24460 () | 55090..55785 | - | 696 | WP_001681668.1 | DotI/IcmL family type IV secretion protein | - |
| HHJ31_RS24465 () | 55797..56147 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| HHJ31_RS24470 () | 56164..60225 | - | 4062 | WP_169063393.1 | DNA primase | - |
| HHJ31_RS24475 () | 60579..61160 | - | 582 | WP_025750394.1 | hypothetical protein | - |
| HHJ31_RS24480 () | 61392..61682 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| HHJ31_RS24485 () | 61679..62827 | - | 1149 | WP_013307876.1 | putative protein YggR | VF |
| HHJ31_RS24490 () | 62811..63647 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| HHJ31_RS24495 () | 63644..64102 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| HHJ31_RS24500 () | 64206..65408 | - | 1203 | WP_013307879.1 | conjugal transfer protein TraF | - |
| HHJ31_RS24505 () | 65510..66331 | - | 822 | WP_001681675.1 | hypothetical protein | - |
| HHJ31_RS24510 () | 66544..67668 | - | 1125 | WP_013307880.1 | site-specific integrase | - |
| HHJ31_RS24515 () | 67718..68026 | + | 309 | WP_102166912.1 | pilus assembly protein | - |
| HHJ31_RS24520 () | 68342..68539 | + | 198 | WP_001356717.1 | hypothetical protein | - |
| HHJ31_RS24525 () | 68822..69199 | + | 378 | WP_052972533.1 | phage tail protein | - |
| HHJ31_RS24530 () | 69204..70526 | - | 1323 | WP_053904788.1 | hypothetical protein | VF |
| HHJ31_RS24535 () | 70544..71170 | - | 627 | WP_000939245.1 | prepilin peptidase | - |
| HHJ31_RS24540 () | 71186..71671 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
| HHJ31_RS24545 () | 71716..72252 | - | 537 | WP_000111521.1 | hypothetical protein | VF |
| HHJ31_RS24550 () | 72314..73408 | - | 1095 | WP_052945780.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HHJ31_RS24555 () | 73410..74918 | - | 1509 | WP_000880806.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HHJ31_RS24560 () | 75022..75480 | - | 459 | WP_052945779.1 | hypothetical protein | VF |
| HHJ31_RS24565 () | 75470..76765 | - | 1296 | WP_000129883.1 | type 4b pilus protein PilO2 | - |
| HHJ31_RS24570 () | 76786..78405 | - | 1620 | WP_001035562.1 | Outer membrane lipoprotein BfpB | VF |
| HHJ31_RS24575 () | 78437..78874 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| HHJ31_RS24580 () | 78878..79948 | - | 1071 | WP_000730430.1 | hypothetical protein | VF |
| HHJ31_RS24585 () | 80189..80509 | - | 321 | WP_001447108.1 | hypothetical protein | - |
| HHJ31_RS24590 () | 80625..80867 | - | 243 | WP_001271734.1 | PilI type IV pilus biogenesis protein | - |
| HHJ31_RS24595 () | 80948..81091 | - | 144 | WP_072105535.1 | hypothetical protein | - |
| HHJ31_RS24600 () | 81358..82020 | - | 663 | WP_049297686.1 | traC | - |
| HHJ31_RS24605 () | 82160..82801 | - | 642 | WP_000335849.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|