MGE detailed information
MGE type: Conjugative plasmid MGE length: 94616 bp
Accession: NZ_CP051713 Location: 1..94616 Organism: Escherichia coli strain SCU-123 Replicon: plasmid pSCU-123-2
Accession: NZ_CP051713 Location: 1..94616 Organism: Escherichia coli strain SCU-123 Replicon: plasmid pSCU-123-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ36_RS25125 () | 1..1032 | + | 1032 | WP_000907880.1 | replication initiation protein | - |
| HHJ36_RS25130 () | 1940..2224 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HHJ36_RS25135 () | 2224..2499 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HHJ36_RS25140 () | 2605..2886 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| HHJ36_RS25735 () | 3077..3343 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| HHJ36_RS25145 () | 3343..3525 | - | 183 | Protein_5 | hypothetical protein | - |
| HHJ36_RS25150 () | 3581..4183 | - | 603 | WP_000517694.1 | hypothetical protein | - |
| HHJ36_RS25155 () | 4537..5883 | + | 1347 | WP_001132025.1 | hypothetical protein | - |
| HHJ36_RS25160 () | 6410..6712 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| HHJ36_RS25165 () | 6709..7335 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| HHJ36_RS25170 () | 7531..8802 | - | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| HHJ36_RS25175 () | 8802..9239 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HHJ36_RS25180 () | 9236..9484 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HHJ36_RS25185 () | 9903..10805 | + | 903 | WP_001330417.1 | DUF1281 domain-containing protein | - |
| HHJ36_RS25190 () | 10809..11113 | + | 305 | Protein_14 | hypothetical protein | - |
| HHJ36_RS25195 () | 11189..11872 | + | 684 | WP_000086137.1 | DNA methylase | - |
| HHJ36_RS25200 () | 11873..12094 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| HHJ36_RS25205 () | 12108..12542 | + | 435 | WP_000274421.1 | DUF1380 family protein | - |
| HHJ36_RS25210 () | 12587..13357 | + | 771 | WP_001006204.1 | hypothetical protein | - |
| HHJ36_RS25220 () | 13896..14198 | + | 303 | WP_072106536.1 | antirestriction protein | - |
| HHJ36_RS25225 () | 14245..14667 | + | 423 | WP_000271688.1 | DUF1380 family protein | - |
| HHJ36_RS25230 () | 14664..14855 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| HHJ36_RS25235 () | 16279..18180 | + | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| HHJ36_RS25240 () | 18330..18815 | + | 486 | WP_031222835.1 | single-stranded DNA-binding protein | - |
| HHJ36_RS25245 () | 18873..19106 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| HHJ36_RS25250 () | 19165..21123 | + | 1959 | WP_001145476.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ36_RS25255 () | 21178..21612 | + | 435 | WP_000845903.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ36_RS25260 () | 21609..22328 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| HHJ36_RS25265 () | 22325..22921 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| HHJ36_RS25275 () | 23383..23883 | + | 501 | WP_000117631.1 | antirestriction protein ArdA | - |
| HHJ36_RS25280 () | 24616..25050 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| HHJ36_RS25285 () | 25143..25409 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| HHJ36_RS25290 () | 25586..25975 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| HHJ36_RS25295 () | 25972..26898 | + | 927 | WP_000038335.1 | Recombination-promoting nuclease RpnA | VF |
| HHJ36_RS25300 () | 26898..27143 | + | 246 | WP_001260883.1 | hypothetical protein | - |
| HHJ36_RS25305 () | 27174..27425 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| HHJ36_RS25310 () | 28006..28854 | + | 849 | WP_001077034.1 | DUF4942 domain-containing protein | - |
| HHJ36_RS25315 () | 28940..29275 | - | 336 | WP_000157083.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HHJ36_RS25320 () | 29508..29840 | + | 333 | WP_001291058.1 | hypothetical protein | - |
| HHJ36_RS25325 () | 29852..32563 | + | 2712 | WP_000991384.1 | Protein TraI | Relaxase |
| HHJ36_RS25330 () | 32631..33062 | + | 432 | WP_001335086.1 | hypothetical protein | - |
| HHJ36_RS25335 () | 33412..33816 | + | 405 | Protein_41 | IS91 family transposase ISPps1 | Transposase |
| HHJ36_RS25340 () | 33923..34654 | - | 732 | Protein_42 | hypothetical protein | ARG |
| HHJ36_RS25345 () | 34689..37694 | - | 3006 | WP_001143761.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HHJ36_RS25350 () | 37858..38415 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HHJ36_RS25355 () | 38598..39458 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| HHJ36_RS25360 () | 39607..39714 | - | 108 | Protein_46 | hypothetical protein | - |
| HHJ36_RS25365 () | 39714..40517 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| HHJ36_RS25370 () | 40578..41393 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| HHJ36_RS25385 () | 42257..44560 | - | 2304 | WP_000077663.1 | TraM recognition domain-containing protein | - |
| HHJ36_RS25390 () | 44541..45665 | - | 1125 | WP_000152378.1 | DsbC family protein | - |
| HHJ36_RS25395 () | 45662..46996 | - | 1335 | WP_074522531.1 | IncI1-type conjugal transfer protein TrbA | - |
| HHJ36_RS25400 () | 47334..47480 | + | 147 | WP_001346191.1 | hypothetical protein | - |
| HHJ36_RS25405 () | 48061..48312 | + | 252 | WP_001081066.1 | hypothetical protein | - |
| HHJ36_RS25410 () | 48375..48551 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| HHJ36_RS25415 () | 48701..49168 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| HHJ36_RS25420 () | 49328..49951 | + | 624 | WP_001155250.1 | DNA-binding protein | - |
| HHJ36_RS25425 () | 50149..50364 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| HHJ36_RS25430 () | 50368..50736 | - | 369 | WP_001345852.1 | hypothetical protein | - |
| HHJ36_RS25435 () | 51027..51269 | - | 243 | WP_000650923.1 | hypothetical protein | - |
| HHJ36_RS25440 () | 51599..51751 | + | 153 | WP_001335079.1 | Hok/Gef family protein | - |
| HHJ36_RS25445 () | 51889..53479 | - | 1591 | Protein_61 | TnsA endonuclease N-terminal domain-containing protein | - |
| HHJ36_RS25450 () | 53753..54403 | - | 651 | WP_001044247.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HHJ36_RS25455 () | 54492..56657 | - | 2166 | WP_000691810.1 | DotA/TraY family protein | - |
| HHJ36_RS25460 () | 56732..57301 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| HHJ36_RS25465 () | 57298..58503 | - | 1206 | WP_001189549.1 | conjugal transfer protein TraW | - |
| HHJ36_RS25470 () | 58461..59081 | - | 621 | WP_021516921.1 | hypothetical protein | - |
| HHJ36_RS25475 () | 59081..62125 | - | 3045 | WP_021516922.1 | hypothetical protein | - |
| HHJ36_RS25480 () | 62420..63238 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| HHJ36_RS25485 () | 63153..63404 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| HHJ36_RS25490 () | 63461..63859 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| HHJ36_RS25495 () | 63906..64433 | - | 528 | WP_001388619.1 | conjugal transfer protein TraQ | - |
| HHJ36_RS25500 () | 64433..65146 | - | 714 | WP_000787002.1 | conjugal transfer protein TraP | - |
| HHJ36_RS25505 () | 65143..66480 | - | 1338 | WP_021516923.1 | conjugal transfer protein TraO | - |
| HHJ36_RS25510 () | 66484..67458 | - | 975 | WP_000547386.1 | hypothetical protein | VF |
| HHJ36_RS25515 () | 67469..68164 | - | 696 | WP_001287545.1 | DotI/IcmL family type IV secretion protein | - |
| HHJ36_RS25520 () | 68176..68526 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| HHJ36_RS25525 () | 68543..72604 | - | 4062 | WP_169062187.1 | DNA primase | - |
| HHJ36_RS25530 () | 72668..72958 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| HHJ36_RS25535 () | 72955..74103 | - | 1149 | WP_000775210.1 | putative protein YggR | VF |
| HHJ36_RS25540 () | 74087..74923 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| HHJ36_RS25545 () | 74920..75378 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| HHJ36_RS25550 () | 75482..76684 | - | 1203 | WP_000979993.1 | conjugal transfer protein TraF | - |
| HHJ36_RS25555 () | 76786..77607 | - | 822 | WP_000845373.1 | hypothetical protein | - |
| HHJ36_RS25560 () | 78080..79441 | - | 1362 | WP_001168171.1 | hypothetical protein | VF |
| HHJ36_RS25565 () | 79459..80085 | - | 627 | WP_000939245.1 | prepilin peptidase | - |
| HHJ36_RS25570 () | 80101..80586 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
| HHJ36_RS25575 () | 80631..81167 | - | 537 | WP_000111534.1 | hypothetical protein | VF |
| HHJ36_RS25580 () | 81229..82323 | - | 1095 | WP_000697158.1 | type II secretion system F family protein | - |
| HHJ36_RS25585 () | 82325..83833 | - | 1509 | WP_000880807.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HHJ36_RS25590 () | 83937..84395 | - | 459 | WP_000095885.1 | hypothetical protein | VF |
| HHJ36_RS25595 () | 84385..85680 | - | 1296 | WP_169062188.1 | type 4b pilus protein PilO2 | - |
| HHJ36_RS25600 () | 85701..87320 | - | 1620 | WP_001035565.1 | Outer membrane lipoprotein BfpB | VF |
| HHJ36_RS25605 () | 87352..87789 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| HHJ36_RS25610 () | 87793..88863 | - | 1071 | WP_083574971.1 | hypothetical protein | VF |
| HHJ36_RS25615 () | 89090..89425 | - | 336 | WP_001335624.1 | hypothetical protein | - |
| HHJ36_RS25620 () | 89541..89858 | - | 318 | WP_001330559.1 | PilI type IV pilus biogenesis protein | - |
| HHJ36_RS25625 () | 89864..91558 | - | 1695 | WP_000482665.1 | flotillin family protein | - |
| HHJ36_RS25630 () | 91585..92205 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| HHJ36_RS25635 () | 92472..93134 | - | 663 | WP_000154142.1 | hypothetical protein | - |
| HHJ36_RS25640 () | 93275..93916 | - | 642 | WP_000335849.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|